Personal tools

FFCP PHASE1:Mm9::chr17:53618754..53618773,+: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{FFCP
{{FFCP|EntrezGene=271457|HGNC=|UniProt=Q9CQD1,Q4VAA1|association_with_transcript=195bp_to_ENSMUST00000017975,NM_025887,uc008czn.1_5end|description=CAGE_peak_5_at_Rab5a_5end|id=chr17:53618754..53618773,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!3.15e-08!51|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.10e-08,51|phase1_expression=3.20297694209588,13.2610654902957,10.0099832665698,6.0492842261366,9.01612313903425,5.37213670118047,4.20502753071946,1.80772652818207,9.01047821770667,5.38348410540585,2.56826952338257,2.95156988282745,2.39681021903688,3.75907730401689,0.666219523631325,2.02475267389826,0,0.946386496074713,0.959801035240171,0.84877930359606,2.8064285749853,3.47518329203099,2.87319768052829,7.1996590257033,6.65286915094793,14.3557991028755,12.9228598847722,7.75696437669201,6.27077284206034,4.03248207615889,6.20845429834853,0,0,0,1.73310971850765,1.16364251750945,1.63335485009895,9.62622750694888,10.1573594788094,7.85285615960697,8.82347232046521,8.87959130445979,4.85510353031154,5.91715044485213,5.5757312170733,6.60768307782054,2.34717403304412,2.61630187656536,3.29529274101708,5.05517737593137,3.77963338388479,0,2.85230430298152,7.25362142011344,5.04140698713696,8.2323019531503,4.29800159908135,6.70373719960675,1.41621522601718,0,1.26766280701236,2.37191172448392,2.66788438833342,2.2497492932035,3.9554654502679,2.1314403448383,2.09720077362883,2.30530983192933,1.03689612308478,0.810035629990144,1.05162480675691,3.42781181284564,1.76694832761291,0.244981598429908,0.575072826109418,0,4.40463523997555,3.06449611404451,4.76180253094355,0.659431438650969,1.09785172322892,0.52091337055676,4.74611098302348,3.93933827022176,4.5839474333043,2.35702868378934,3.84403538157578,1.4911955666024,4.01348824665875,5.13886608726142,3.47837386442013,0,2.719885334831,3.77792234146472,2.59910566979068,4.92829575807069,3.7919993435573,5.62420064507591,4.67614808285164,5.65343319216544,3.09855523508697,2.56652954828636,2.54805239706646,0,7.14420435337007,4.81383744402687,5.56076889516262,3.9964357901671,3.10725460376606,4.45326417194474,1.73485326766136,2.13125834818499,3.22861696158482,1.3565037649736,3.52766121407114,3.51866455723091,11.3709685157812,4.33798070759735,3.5384422077995,3.88240439873782,2.87093973998512,2.42437626567611,3.72783522436244,2.04946557908083,3.97948742945565,3.83185582812887,3.23500836165985,4.19931911695385,4.57452817463033,5.39246301857362,2.28750301409313,2.76439574648302,3.47648640384553,6.13717097592793,4.57133698031032,4.70499662896497,2.34230536855727,3.98102305952298,5.30717792710717,5.26104639716185,0.650602214813519,2.29902104433473,0.900310649026746,1.05493372485001,1.76894897793452,0.768682321709099,0.749613796477831,2.32833033665114,1.29340795759705,0.567318240503458,1.23165786914764,1.97276159184817,1.11218899690239,2.089512999133,2.88094990971121,0.59710280045548,7.72434506044558,5.40430604940902,3.6941254921427,1.86413195281952,1.17263029990548,1.98068267607116,1.65721314909647,1.96764231747404,1.69693824176116,1.39520366850245,1.3413670069981,1.98501082024188,2.96207729844265,2.95501435342371,2.59420190546738,2.48539978623065,1.53685080703735,3.22095405024892,5.67782861123144,1.9551876352064,4.29544417878937,4.7601101999438,1.49301775374664,0.928946687441754,1.15980715189884,1.4117846723634,3.55804870151792,3.99473814836374,5.69434873853414,4.44687177754829,6.53471542880701,4.97391180102877,7.01870713628832,3.59527763461689,4.75503709724327,5.97423819763102,1.70701110857774,1.82797620175566,1.1270773567308,2.44381593414377,1.16371492300575,2.66516115583211,2.97211724484009,3.54264355151045,4.70996183524124,5.05928372079382,4.44678940630723,1.16791574001266,2.16214894624523,1.34917267430912,0.405720242777006,1.92941727801933,2.5462585178142,2.5892652370573,1.94562272130042,2.74561413188081,1.43768206527355,3.34926852901653,3.43241440426017,3.53610429125956,4.4849353380478,5.30687873499704,6.28160846566456,2.08440552947533,1.46668478797823,1.35796068620151,1.64283173801951,2.1775813467436,3.09456733151818,5.46374214001837,3.78324345854858,5.53661724121937,4.78364305972461,3.60499292374624,5.52591941970866,9.11289069063523,4.52373851817817,5.4390568381871,8.85175691434265,9.10591262805617,4.81651769963376,6.09500770279457,2.45902418065013,4.79694761688309,1.89304931649754,2.34263246577983,2.58508077279359,1.67278158566786,1.55959071857676,1.13230612315533,2.42886421004937,2.92255857911312,0.790575555893047,1.60660658210904,2.6968616189571,0.712262414669021,1.46598263418218,3.13443233647817,9.2921596837974,1.21390318077491,1.51161778482376,2.26326095707078,0.590603785761546,3.68922177532713,4.9101375701962,3.99887102425256,3.56497378384721,6.63677191665214,5.27093042874994,2.06271086496374,1.70219802876894,0.900305470156551,0.258717367565509,0.857348140126369,1.59606210278046,1.60531935841864,1.64549020602121,1.2178597964584,10.3255551548033,11.0152676849186,12.3495902910779,3.2977250588296,6.45857706783622,5.12659861889325,3.58117032009409,3.61109979439135,6.70405924248657,5.00648315428376,1.70870880797853,1.857481811669,1.66675074632741,1.88368457004691,0.820165366326151,1.14389086603261,4.41943917984024,3.35883485576779,3.59319931891502,2.86401185404534,0.790839983952838,3.86306987541013,2.16010681643603,2.29997125615916,4.14888871117737,4.45052343069908,3.88471241909079,4.18809507174447,8.81381818384192,11.1841076355647,1.12738587736838,2.54178128274764,1.65458490457098,2.13896307178452,1.80823752868824,2.02747350588934,0.704143431874524,2.73429208172295,1.15345278868282,1.69108884578204,0.576060012515731,2.52808896502543,1.41907650703115,1.1298205288131,1.81889152168913,2.14832034800978,1.98681354781265,2.04332264183947,2.06765338044408,1.9183625490148,2.057583779685,1.31074040677893,2.33898913775406,2.30908419936791,1.8700304349051,3.40095575422817,7.10355050797007,6.2799699626633,5.70807695637867,5.02292944483695,6.94425159169373,3.11357761254351,4.28736758158132,8.02515366456581,6.21227026878773,4.14292712856459,4.01026859407578,6.35856774671644,1.37016503954128,5.2877572817279,3.37511250115903,3.60256962579376,2.71885445390523,2.5888015587591,0.415149390336707,1.99512436700516,0.512200817262403,0.486213434136588,1.88651846365184,1.83843508450014,2.44471400581777,2.88449080134452,2.88827288632634,2.27427490587418,1.01391719956096,1.69763707247469,2.62196220915671,1.98477972455095,2.23998328926892,3.81034953026459,3.01299247456624,2.31491064556446,2.06042950401653,2.35518272215036,1.71434626192708,3.19456451086807,2.86123427936785,2.0348498328526,1.69396884747595,2.70766745253365,1.46342378298218,3.15683653725411,2.30866993537965,2.24456908663095,2.01679530811096,2.9551344712669,5.32000356120596,1.85924209423159,1.54325288784913,1.24905288968973,2.57324769289949,4.29742108096597,2.10417165275728,3.75005412503176,5.10109238364927|short_description=p5@Rab5a}}
|EntrezGene=271457
|HGNC=
|UniProt=Q9CQD1,Q4VAA1
|association_with_transcript=195bp_to_ENSMUST00000017975,NM_025887,uc008czn.1_5end
|description=CAGE_peak_5_at_Rab5a_5end
|id=chr17:53618754..53618773,+
|ontology_enrichment_celltype=
|ontology_enrichment_celltype_v019_2=
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0007023!3.15e-08!51
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.10e-08,51
|phase1_expression=3.20297694209588,13.2610654902957,10.0099832665698,6.0492842261366,9.01612313903425,5.37213670118047,4.20502753071946,1.80772652818207,9.01047821770667,5.38348410540585,2.56826952338257,2.95156988282745,2.39681021903688,3.75907730401689,0.666219523631325,2.02475267389826,0,0.946386496074713,0.959801035240171,0.84877930359606,2.8064285749853,3.47518329203099,2.87319768052829,7.1996590257033,6.65286915094793,14.3557991028755,12.9228598847722,7.75696437669201,6.27077284206034,4.03248207615889,6.20845429834853,0,0,0,1.73310971850765,1.16364251750945,1.63335485009895,9.62622750694888,10.1573594788094,7.85285615960697,8.82347232046521,8.87959130445979,4.85510353031154,5.91715044485213,5.5757312170733,6.60768307782054,2.34717403304412,2.61630187656536,3.29529274101708,5.05517737593137,3.77963338388479,0,2.85230430298152,7.25362142011344,5.04140698713696,8.2323019531503,4.29800159908135,6.70373719960675,1.41621522601718,0,1.26766280701236,2.37191172448392,2.66788438833342,2.2497492932035,3.9554654502679,2.1314403448383,2.09720077362883,2.30530983192933,1.03689612308478,0.810035629990144,1.05162480675691,3.42781181284564,1.76694832761291,0.244981598429908,0.575072826109418,0,4.40463523997555,3.06449611404451,4.76180253094355,0.659431438650969,1.09785172322892,0.52091337055676,4.74611098302348,3.93933827022176,4.5839474333043,2.35702868378934,3.84403538157578,1.4911955666024,4.01348824665875,5.13886608726142,3.47837386442013,0,2.719885334831,3.77792234146472,2.59910566979068,4.92829575807069,3.7919993435573,5.62420064507591,4.67614808285164,5.65343319216544,3.09855523508697,2.56652954828636,2.54805239706646,0,7.14420435337007,4.81383744402687,5.56076889516262,3.9964357901671,3.10725460376606,4.45326417194474,1.73485326766136,2.13125834818499,3.22861696158482,1.3565037649736,3.52766121407114,3.51866455723091,11.3709685157812,4.33798070759735,3.5384422077995,3.88240439873782,2.87093973998512,2.42437626567611,3.72783522436244,2.04946557908083,3.97948742945565,3.83185582812887,3.23500836165985,4.19931911695385,4.57452817463033,5.39246301857362,2.28750301409313,2.76439574648302,3.47648640384553,6.13717097592793,4.57133698031032,4.70499662896497,2.34230536855727,3.98102305952298,5.30717792710717,5.26104639716185,0.650602214813519,2.29902104433473,0.900310649026746,1.05493372485001,1.76894897793452,0.768682321709099,0.749613796477831,2.32833033665114,1.29340795759705,0.567318240503458,1.23165786914764,1.97276159184817,1.11218899690239,2.089512999133,2.88094990971121,0.59710280045548,7.72434506044558,5.40430604940902,3.6941254921427,1.86413195281952,1.17263029990548,1.98068267607116,1.65721314909647,1.96764231747404,1.69693824176116,1.39520366850245,1.3413670069981,1.98501082024188,2.96207729844265,2.95501435342371,2.59420190546738,2.48539978623065,1.53685080703735,3.22095405024892,5.67782861123144,1.9551876352064,4.29544417878937,4.7601101999438,1.49301775374664,0.928946687441754,1.15980715189884,1.4117846723634,3.55804870151792,3.99473814836374,5.69434873853414,4.44687177754829,6.53471542880701,4.97391180102877,7.01870713628832,3.59527763461689,4.75503709724327,5.97423819763102,1.70701110857774,1.82797620175566,1.1270773567308,2.44381593414377,1.16371492300575,2.66516115583211,2.97211724484009,3.54264355151045,4.70996183524124,5.05928372079382,4.44678940630723,1.16791574001266,2.16214894624523,1.34917267430912,0.405720242777006,1.92941727801933,2.5462585178142,2.5892652370573,1.94562272130042,2.74561413188081,1.43768206527355,3.34926852901653,3.43241440426017,3.53610429125956,4.4849353380478,5.30687873499704,6.28160846566456,2.08440552947533,1.46668478797823,1.35796068620151,1.64283173801951,2.1775813467436,3.09456733151818,5.46374214001837,3.78324345854858,5.53661724121937,4.78364305972461,3.60499292374624,5.52591941970866,9.11289069063523,4.52373851817817,5.4390568381871,8.85175691434265,9.10591262805617,4.81651769963376,6.09500770279457,2.45902418065013,4.79694761688309,1.89304931649754,2.34263246577983,2.58508077279359,1.67278158566786,1.55959071857676,1.13230612315533,2.42886421004937,2.92255857911312,0.790575555893047,1.60660658210904,2.6968616189571,0.712262414669021,1.46598263418218,3.13443233647817,9.2921596837974,1.21390318077491,1.51161778482376,2.26326095707078,0.590603785761546,3.68922177532713,4.9101375701962,3.99887102425256,3.56497378384721,6.63677191665214,5.27093042874994,2.06271086496374,1.70219802876894,0.900305470156551,0.258717367565509,0.857348140126369,1.59606210278046,1.60531935841864,1.64549020602121,1.2178597964584,10.3255551548033,11.0152676849186,12.3495902910779,3.2977250588296,6.45857706783622,5.12659861889325,3.58117032009409,3.61109979439135,6.70405924248657,5.00648315428376,1.70870880797853,1.857481811669,1.66675074632741,1.88368457004691,0.820165366326151,1.14389086603261,4.41943917984024,3.35883485576779,3.59319931891502,2.86401185404534,0.790839983952838,3.86306987541013,2.16010681643603,2.29997125615916,4.14888871117737,4.45052343069908,3.88471241909079,4.18809507174447,8.81381818384192,11.1841076355647,1.12738587736838,2.54178128274764,1.65458490457098,2.13896307178452,1.80823752868824,2.02747350588934,0.704143431874524,2.73429208172295,1.15345278868282,1.69108884578204,0.576060012515731,2.52808896502543,1.41907650703115,1.1298205288131,1.81889152168913,2.14832034800978,1.98681354781265,2.04332264183947,2.06765338044408,1.9183625490148,2.057583779685,1.31074040677893,2.33898913775406,2.30908419936791,1.8700304349051,3.40095575422817,7.10355050797007,6.2799699626633,5.70807695637867,5.02292944483695,6.94425159169373,3.11357761254351,4.28736758158132,8.02515366456581,6.21227026878773,4.14292712856459,4.01026859407578,6.35856774671644,1.37016503954128,5.2877572817279,3.37511250115903,3.60256962579376,2.71885445390523,2.5888015587591,0.415149390336707,1.99512436700516,0.512200817262403,0.486213434136588,1.88651846365184,1.83843508450014,2.44471400581777,2.88449080134452,2.88827288632634,2.27427490587418,1.01391719956096,1.69763707247469,2.62196220915671,1.98477972455095,2.23998328926892,3.81034953026459,3.01299247456624,2.31491064556446,2.06042950401653,2.35518272215036,1.71434626192708,3.19456451086807,2.86123427936785,2.0348498328526,1.69396884747595,2.70766745253365,1.46342378298218,3.15683653725411,2.30866993537965,2.24456908663095,2.01679530811096,2.9551344712669,5.32000356120596,1.85924209423159,1.54325288784913,1.24905288968973,2.57324769289949,4.29742108096597,2.10417165275728,3.75005412503176,5.10109238364927
|short_description=p5@Rab5a
}}

Revision as of 14:55, 13 September 2013

Short description:p5@Rab5a
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_5_at_Rab5a_5end
Coexpression cluster:NA
Association with transcript: 195bp_to_ENSMUST00000017975, NM_025887, uc008czn.1_5end
EntrezGene:Rab5a
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression

Sample

p5@Rab5a

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G73.20
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I513.26
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I610.01
CD326+ enterocyte, pool1.CNhs13542.11848-124I36.05
CD326+ enterocyte, pool2.CNhs13197.11849-124I49.02
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I75.37
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I84.21
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E91.81
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E79.01
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F25.38
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E62.57
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F12.95
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E42.40
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E83.76
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A10.67
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A32.02
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A50.00
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A20.95
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A40.96
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A60.85
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A32.81
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H23.48
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I92.87
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D17.20
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D26.65
GP2+ M cell, pool1.CNhs13228.11845-124H914.36
GP2+ M cell, pool2.CNhs13231.11846-124I112.92
GP2+ M cell, pool3.CNhs13240.11847-124I27.76
Ileum epithelium, pool1.CNhs13199.10252-104B96.27
Ileum epithelium, pool2.CNhs13232.10253-104C14.03
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C86.21
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I30.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G60.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E90.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F51.73
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F61.16
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F71.63
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G89.63
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H110.16
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H37.85
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G98.82
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H28.88
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H44.86
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D85.92
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D95.58
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B36.61
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B72.35
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C22.62
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B83.30
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C35.06
Mouse Astrocytes, donor2.CNhs12078.11552-120C43.78
Mouse Astrocytes, donor3.CNhs12107.11633-122C40.00
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A22.85
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I97.25
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A15.04
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C18.23
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E14.30
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C56.70
Mouse Granule cells, donor1.CNhs12131.11713-123C31.42
Mouse Granule cells, donor2.CNhs12357.11731-123E30.00
Mouse Granule cells, donor3.CNhs12108.11636-122C71.27
Mouse Meningeal cells, donor1.CNhs12132.11716-123C62.37
Mouse Meningeal cells, donor3.CNhs12109.11639-122D12.67
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C72.25
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E73.96
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D22.13
Mouse Microglia, donor1.CNhs12629.11718-123C82.10
Mouse Microglia, donor2.CNhs12634.11736-123E82.31
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D51.04
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F50.81
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D91.05
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F13.43
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D51.77
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D20.24
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F20.58
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D60.00
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D34.40
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F33.06
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D74.76
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D40.66
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F41.10
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D80.52
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E44.75
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E53.94
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I64.58
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D62.36
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F63.84
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E11.49
Mouse Schwann, donor1.CNhs12507.11728-123D94.01
Mouse Schwann, donor2.CNhs12573.11746-123F95.14
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G33.48
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F70.00
Mouse hepatocyte, donor1.CNhs13078.11714-123C42.72
Mouse hepatocyte, donor3.CNhs12615.11637-122C83.78
Mouse hepatocyte, donor6.CNhs13090.11822-124F42.60
Mouse hepatocyte, donor8.CNhs13091.11824-124F64.93
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A73.79
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I75.62
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E34.68
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I85.65
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G63.10
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H12.57
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I82.55
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B60.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G17.14
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G24.81
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G35.56
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B64.00
accessory axillary lymph node, adult.CNhs10475.1063-29H93.11
adrenal gland, adult.CNhs10508.49-24D74.45
adrenal gland, embryo E14.CNhs11038.406-44C51.73
adrenal gland, embryo E16.CNhs11004.1254-43D62.13
adrenal gland, embryo E17.CNhs11043.1263-45I13.23
adrenal gland, embryo E18.CNhs11026.1262-18F51.36
adrenal gland, neonate N00.CNhs11191.1311-23C13.53
adrenal gland, neonate N25.CNhs11223.1377-27I33.52
amnion, adult pregnant day17.5.CNhs10488.583-22A811.37
aorta, adult.CNhs10498.46-23H14.34
bone (os femoris), adult.CNhs10483.56-12G23.54
bone (os femoris), neonate N02.CNhs11227.1985-43F53.88
bone (os femoris), neonate N16.CNhs11225.1525-43A62.87
bone (os femoris), neonate N20.CNhs11195.1350-25C32.42
cecum, adult.CNhs10467.37-13H43.73
cerebellum, adult.CNhs10494.15-8B22.05
cerebellum, neonate N30.CNhs11135.1395-42I23.98
colon, adult.CNhs10468.36-18H73.83
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C73.24
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D14.20
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D44.57
corpora quadrigemina, adult.CNhs10501.16-22A45.39
corpus striatum, adult.CNhs10487.19-21D82.29
corpus striatum, neonate N00.CNhs11226.630-43F12.76
cortex, adult.CNhs10473.12-14D53.48
cortex, neonate N30.CNhs11107.1392-42F26.14
diencephalon, adult.CNhs10482.20-12F24.57
diencephalon, neonate N30.CNhs11201.1388-42B24.70
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B12.34
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A23.98
epididymis, adult.CNhs10490.58-23B25.31
eyeball, adult.CNhs10484.31-12G45.26
eyeball, embryo E12.CNhs11016.345-16C60.65
eyeball, embryo E14.CNhs10521.399-16E22.30
eyeball, embryo E15.CNhs10593.426-16C90.90
eyeball, embryo E17.CNhs11023.1261-18D41.05
eyeball, neonate N00.CNhs11207.633-15C61.77
eyeball, neonate N01.CNhs11140.1532-43E70.77
eyeball, neonate N02.CNhs11205.1551-44G80.75
eyeball, neonate N16.CNhs11188.777-19A22.33
forelimb, embryo E11.CNhs10596.335-25E21.29
forelimb, embryo E12.CNhs10600.359-14H20.57
forelimb, embryo E13.CNhs10589.384-1E21.23
forelimb, embryo E14.CNhs10577.413-26A81.97
forelimb, embryo E15.CNhs11007.437-20E71.11
forelimb, embryo E17.CNhs10598.1517-43C42.09
forelimb, embryo E18.CNhs11008.1520-43B52.88
gonad, embryo E13.CNhs11044.1564-45I60.60
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C87.72
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D25.40
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D53.69
heart, embryo E11.CNhs10586.331-24E91.86
heart, embryo E12.CNhs11015.353-12F51.17
heart, embryo E13.CNhs11013.376-3I91.98
heart, embryo E14.CNhs10597.403-26D41.66
heart, embryo E15.CNhs11017.431-16C81.97
heart, embryo E16.CNhs11021.457-17C61.70
heart, embryo E17.CNhs11025.479-18E51.40
heart, embryo E18.CNhs11030.1283-20G31.34
heart, neonate N00.CNhs11213.639-21E31.99
heart, neonate N03.CNhs11221.1349-25I22.96
heart, neonate N10.CNhs11118.749-24G12.96
heart, neonate N16.CNhs11209.782-15G12.59
heart, neonate N20.CNhs11127.821-26I62.49
heart, neonate N25.CNhs11196.1351-25D31.54
heart, neonate N30.CNhs11202.1390-42D23.22
hippocampus, adult.CNhs10478.13-16E85.68
hippocampus, neonate N00.CNhs11228.627-43G11.96
intestinal mucosa, adult.CNhs10506.860-29I34.30
intestine, adult.CNhs10496.178-9A34.76
intestine, embryo E12.CNhs11019.1251-16I51.49
intestine, embryo E13.CNhs11010.381-16D50.93
intestine, embryo E15.CNhs10602.976-16D81.16
intestine, embryo E16.CNhs10585.463-22H41.41
intestine, embryo E17.CNhs10582.482-18D33.56
intestine, embryo E18.CNhs10526.1289-20F73.99
intestine, neonate N00.CNhs11126.644-26D15.69
intestine, neonate N01.CNhs11192.1322-23E94.45
intestine, neonate N06.CNhs11102.688-20B86.53
intestine, neonate N07.CNhs11095.720-20F24.97
intestine, neonate N10.CNhs11098.755-23A57.02
intestine, neonate N20.CNhs11187.827-18D13.60
intestine, neonate N25.CNhs11121.1352-25E34.76
intestine, neonate N30.CNhs11131.1384-42G15.97
kidney, embryo E14.CNhs10606.411-4I91.71
kidney, embryo E15.CNhs10997.434-16F81.83
kidney, embryo E16.CNhs10584.464-22A51.13
kidney, embryo E17.CNhs11028.483-18I22.44
kidney, embryo E18.CNhs11001.1288-20C71.16
kidney, neonate N00.CNhs11214.646-21G72.67
kidney, neonate N10.CNhs11206.758-6D52.97
kidney, neonate N20.CNhs11113.832-19I13.54
kidney, neonate N25.CNhs11122.1353-25F34.71
kidney, neonate N30.CNhs11203.1385-42H15.06
liver, adult pregnant day01.CNhs10466.508-5B24.45
liver, embryo E12.CNhs10601.355-15F81.17
liver, embryo E13.CNhs10524.378-3H62.16
liver, embryo E14.CNhs10594.409-16E11.35
liver, embryo E15.CNhs10520.433-16D70.41
liver, embryo E16.CNhs10523.462-17F51.93
liver, embryo E17.CNhs10510.481-18A32.55
liver, embryo E18.CNhs10579.499-43G42.59
liver, neonate N00.CNhs11117.641-24F41.95
liver, neonate N03.CNhs11123.1345-25G22.75
liver, neonate N06.CNhs11101.684-20A81.44
liver, neonate N07.CNhs11103.716-20H23.35
liver, neonate N10.CNhs11115.751-24B93.43
liver, neonate N20.CNhs11220.823-25A33.54
liver, neonate N25.CNhs11198.1368-26H14.48
liver, neonate N30.CNhs11106.1382-42D15.31
lung, adult.CNhs10474.28-22B16.28
lung, embryo E12.CNhs10522.354-16G22.08
lung, embryo E14.CNhs10604.404-26F81.47
lung, embryo E15.CNhs11020.432-17C51.36
lung, embryo E16.CNhs10998.458-17B61.64
lung, embryo E17.CNhs10605.480-44A62.18
lung, embryo E18.CNhs10583.1287-20I63.09
lung, neonate N00.CNhs11224.640-42C65.46
lung, neonate N06.CNhs11212.683-20E53.78
lung, neonate N07.CNhs11111.715-19A35.54
lung, neonate N10.CNhs11219.750-23E64.78
lung, neonate N20.CNhs11109.822-18A43.60
lung, neonate N25.CNhs11119.1359-25C75.53
lung, neonate N30.CNhs11133.1394-42H29.11
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A14.52
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A15.44
mammary gland, adult lactating day02.CNhs10480.595-22B68.85
mammary gland, adult pregnant day19.CNhs10476.588-5H29.11
medulla oblongata, adult.CNhs10477.17-12C24.82
medulla oblongata, neonate N30.CNhs11200.1396-42A36.10
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C72.46
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C24.80
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E11.89
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E22.34
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E32.59
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D71.67
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D81.56
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D91.13
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D42.43
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D52.92
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D60.79
olfactory brain, adult.CNhs10489.18-22I91.61
ovary, adult.CNhs10507.91-2I72.70
ovary, embryo E18.CNhs11040.505-44H70.71
ovary, neonate N00.CNhs11217.1299-22I41.47
oviduct, adult pregnant day01.CNhs10500.988-6G63.13
pancreas, adult.CNhs10486.34-16E49.29
pancreas, embryo E14.CNhs11012.405-44F41.21
pancreas, embryo E15.CNhs11042.1556-45F21.51
pancreas, embryo E16.CNhs11003.460-26E52.26
pancreas, embryo E17.CNhs10599.1558-45G30.59
pancreas, embryo E18.CNhs10580.1535-43I73.69
pancreas, neonate N00.CNhs11105.645-26G94.91
pancreas, neonate N01.CNhs11138.1531-43D74.00
pancreas, neonate N02.CNhs11139.1539-43D83.56
pancreas, neonate N16.CNhs11136.787-43B66.64
pancreas, neonate N25.CNhs11094.1555-45E25.27
pancreas, neonate N30.CNhs11182.1548-44H52.06
pituitary gland, adult.CNhs10493.21-1G81.70
pituitary gland, embryo E12.CNhs11018.346-16E60.90
pituitary gland, embryo E13.CNhs11009.370-44C70.26
pituitary gland, embryo E14.CNhs11037.398-44A50.86
pituitary gland, embryo E15.CNhs10592.427-16B91.60
pituitary gland, embryo E16.CNhs11036.449-43F61.61
pituitary gland, embryo E17.CNhs11039.1265-44F51.65
pituitary gland, neonate N00.CNhs11190.1308-22E91.22
placenta, adult pregnant day10.CNhs10472.539-13I710.33
placenta, adult pregnant day17.CNhs10464.577-18G311.02
prostate, adult.CNhs10470.859-1F812.35
skin, adult.CNhs10492.30-1C33.30
skin, neonate N00.CNhs11124.650-25G46.46
skin, neonate N03.CNhs11215.662-22H35.13
skin, neonate N06.CNhs11097.693-20I53.58
skin, neonate N10.CNhs11108.762-6C43.61
small intestine, neonate N16.CNhs11114.790-21I16.70
spinal cord, adult.CNhs10505.24-13C95.01
spleen, adult.CNhs10465.25-2G21.71
spleen, embryo E16.CNhs11035.461-43C11.86
spleen, embryo E18.CNhs11011.1271-21F21.67
spleen, neonate N10.CNhs11116.752-24D11.88
spleen, neonate N20.CNhs11112.824-19H10.82
spleen, neonate N25.CNhs11099.1354-25G31.14
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C64.42
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C93.36
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D33.59
stomach, adult.CNhs10503.33-1H62.86
stomach, embryo E12.CNhs10588.356-43E30.79
stomach, embryo E15.CNhs10603.1252-16G83.86
stomach, embryo E16.CNhs11022.459-17D42.16
stomach, embryo E17.CNhs11006.1035-18D52.30
stomach, embryo E18.CNhs10999.1286-20C64.15
stomach, neonate N03.CNhs11193.1340-24B84.45
stomach, neonate N07.CNhs11210.718-18A93.88
stomach, neonate N25.CNhs11104.1355-25E44.19
stomach, neonate N30.CNhs11134.1386-42I18.81
submandibular gland, adult.CNhs10469.59-29C111.18
testis, adult.CNhs10504.57-7G51.13
testis, embryo E13.CNhs11031.389-23F52.54
testis, embryo E15.CNhs11034.443-27C51.65
testis, embryo E16.CNhs11033.470-26G52.14
testis, embryo E17.CNhs11029.486-18I51.81
testis, embryo E18.CNhs11027.503-18G52.03
testis, neonate N00.CNhs11189.1300-22B70.70
testis, neonate N07.CNhs11222.726-26I42.73
testis, neonate N10.CNhs11204.763-44D91.15
testis, neonate N20.CNhs11110.839-18H31.69
testis, neonate N30.CNhs11130.1391-42E20.58
thymus, adult.CNhs10471.38-12B52.53
thymus, embryo E14.CNhs11041.402-44I41.42
thymus, embryo E15.CNhs11005.430-45I21.13
thymus, embryo E16.CNhs11002.456-26C51.82
thymus, embryo E17.CNhs10581.478-18C12.15
thymus, embryo E18.CNhs10595.1273-19G41.99
thymus, neonate N02.CNhs11181.1541-43F82.04
thymus, neonate N03.CNhs11137.2104-43C72.07
thymus, neonate N06.CNhs11197.681-26C41.92
thymus, neonate N07.CNhs11211.713-19D32.06
thymus, neonate N10.CNhs11194.748-24E41.31
thymus, neonate N20.CNhs11186.820-7A22.34
thymus, neonate N25.CNhs11125.1362-25G72.31
thymus, neonate N30.CNhs11132.1393-42G21.87
tongue, adult.CNhs10499.32-1B43.40
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H37.10
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F76.28
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G55.71
urinary bladder, adult.CNhs10481.879-12E45.02
uterus, adult pregnant day19.CNhs10497.590-15F56.94
uterus, adult.CNhs10509.92-27E53.11
vagina, adult.CNhs10502.89-27D54.29
vesicular gland, adult.CNhs10491.51-27F88.03
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A16.21
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A24.14
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A34.01
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D76.36
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A41.37
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A55.29
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A63.38
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A73.60
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A82.72
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A92.59
whole body, embryo E11.CNhs11014.324-5I80.42
whole body, embryo E12.CNhs10587.857-27C92.00
whole body, embryo E13.CNhs10512.372-23H20.51
whole body, embryo E14.5.CNhs10578.420-27D20.49
whole body, embryo E14.CNhs10519.395-14B11.89
whole body, embryo E16.CNhs10514.453-14F21.84
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G52.44
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G52.88
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G52.89
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G52.27
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G51.01
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G51.70
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G52.62
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G51.98
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G52.24
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G53.81
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G53.01
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G52.31
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G52.06
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G52.36
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G51.71
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G53.19
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G52.86
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G52.03
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G51.69
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G52.71
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G51.46
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G53.16
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G52.31
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G52.24
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G52.02
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G52.96
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G55.32
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G51.86
whole body, embryo E17.5.CNhs10513.490-9F91.54
whole body, embryo E17.CNhs10517.475-3I51.25
whole body, embryo E18.CNhs10516.493-3B32.57
whole body, neonate N00.CNhs10525.657-19C24.30
whole body, neonate N01.CNhs10576.659-23C62.10
whole body, neonate N06.CNhs10515.692-21D13.75
whole body, neonate N10.CNhs10518.761-6B45.10





  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Uber anatomy
Ontology termp-valuen
adult organism3.10e-0851







Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FFCP_PHASE1:Mm9::chr17:53618754..53618773,%2B&oldid=2945943"