FFCP PHASE1:Mm9::chr19:4712118..4712173,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=20743|HGNC=|MCL_coexpression_id=22|UniProt=|association_with_transcript=-234bp_to_uc008gao.1_5end|description=CAGE_peak_2_at_Spnb3_5end|id=chr19:4712118..4712173,+|ontology_enrichment_celltype=CL:0000117!8.59e-18!23;CL:0000337!8.59e-18!23;CL:0000540!1.64e-16!33;CL:0000047!1.64e-16!33;CL:0000031!1.64e-16!33;CL:0000404!1.64e-16!33;CL:0000393!1.55e-11!39;CL:0000211!1.55e-11!39;CL:0000221!6.39e-11!44;CL:0000133!6.39e-11!44;CL:0002319!8.81e-11!43;CL:0000055!2.82e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,9.93e-23,23;CL:0000337,9.93e-23,23;CL:0000540,7.31e-16,33;CL:0000047,7.31e-16,33;CL:0000031,7.31e-16,33;CL:0000404,7.31e-16,33;CL:0000393,7.58e-12,39;CL:0000211,7.58e-12,39;CL:0002319,7.59e-10,43;CL:0000221,2.07e-09,44;CL:0000133,2.07e-09,44;CL:0002609,3.10e-07,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!3.66e-28!71;UBERON:0003075!3.66e-28!71;UBERON:0007284!3.66e-28!71;UBERON:0001017!1.26e-26!73;UBERON:0005743!1.26e-26!73;UBERON:0000073!1.80e-26!75;UBERON:0001016!1.80e-26!75;UBERON:0004121!2.35e-25!102;UBERON:0000924!2.35e-25!102;UBERON:0006601!2.35e-25!102;UBERON:0000033!3.33e-25!63;UBERON:0001049!8.67e-24!52;UBERON:0005068!8.67e-24!52;UBERON:0006241!8.67e-24!52;UBERON:0007135!8.67e-24!52;UBERON:0003056!1.76e-23!49;UBERON:0000955!2.29e-22!50;UBERON:0006238!2.29e-22!50;UBERON:0002616!7.66e-22!49;UBERON:0002020!1.05e-19!34;UBERON:0003080!3.45e-19!40;UBERON:0002780!1.80e-18!39;UBERON:0001890!1.80e-18!39;UBERON:0006240!1.80e-18!39;UBERON:0002791!2.57e-16!29;UBERON:0003528!2.57e-16!29;UBERON:0001893!2.57e-16!29;UBERON:0007811!2.12e-12!86;UBERON:0000153!4.91e-11!94;UBERON:0000956!7.64e-11!21;UBERON:0001869!7.64e-11!21;UBERON:0000203!7.64e-11!21;UBERON:0002619!3.07e-08!17;UBERON:0002021!5.06e-07!10;UBERON:0000411!5.06e-07!10;UBERON:0001950!5.06e-07!10;UBERON:0002420!7.58e-07!8;UBERON:0007245!7.58e-07!8;UBERON:0010009!7.58e-07!8;UBERON:0010011!7.58e-07!8;UBERON:0000454!7.58e-07!8|ontology_enrichment_uberon_v019_2=UBERON:0002346,8.33e-37,64;UBERON:0003075,8.33e-37,64;UBERON:0007284,8.33e-37,64;UBERON:0000073,6.10e-32,54;UBERON:0001049,7.32e-30,52;UBERON:0005068,7.32e-30,52;UBERON:0006241,7.32e-30,52;UBERON:0007135,7.32e-30,52;UBERON:0010371,1.55e-29,73;UBERON:0003056,7.58e-29,49;UBERON:0001017,9.64e-29,73;UBERON:0001016,2.12e-27,75;UBERON:0004121,9.57e-27,95;UBERON:0000924,9.57e-27,95;UBERON:0006601,9.57e-27,95;UBERON:0002020,6.93e-26,34;UBERON:0000955,2.67e-25,47;UBERON:0006238,2.67e-25,47;UBERON:0002616,1.24e-24,46;UBERON:0003080,2.88e-23,40;UBERON:0002780,2.43e-22,39;UBERON:0001890,2.43e-22,39;UBERON:0006240,2.43e-22,39;UBERON:0003528,1.93e-21,29;UBERON:0002791,1.93e-21,29;UBERON:0001893,1.93e-21,29;UBERON:0010314,2.38e-21,92;UBERON:0000956,2.96e-14,21;UBERON:0001869,2.96e-14,21;UBERON:0000203,2.96e-14,21;UBERON:0002619,7.86e-11,17;UBERON:0002021,1.09e-08,10;UBERON:0000411,1.09e-08,10;UBERON:0001950,1.09e-08,10;UBERON:0002420,1.85e-08,8;UBERON:0007245,1.85e-08,8;UBERON:0010009,1.85e-08,8;UBERON:0010011,1.85e-08,8;UBERON:0000454,1.85e-08,8;UBERON:0003076,5.15e-07,12;UBERON:0003057,5.15e-07,12|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.87095238332354,0,0,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,38.4401275633236,31.2104677770499,32.3254015788151,0,0,0,0,0,0,0.384218305321555,21.9821978093973,22.8160035780557,23.135745748652,12.8542942981712,12.589506834242,23.1507610516263,22.6195311603038,33.0918763179608,18.7196997698961,12.7687338085188,17.2039317246993,30.9932776165956,23.6038120494217,32.8175423450759,22.0554569211091,14.069065250792,17.72459674211,15.3206864446307,15.0913981647049,28.1463163196204,0.151452386666368,0.453429360640713,0,0,0,0,0,0,0.280888840263504,0,0,0,0.985903938436763,0,0,0,0.432982082022428,0.253359865475099,0,0.11418387971906,0,0,0.693941307064543,1.52232739156071,1.38369298353635,1.05505848386836,0.705532242814229,0,0,0,0,0,0.220841518460394,0,0,15.8101630386235,12.9856958224342,0.255457055208591,0,0,0,18.4242486467932,7.32000964509802,17.2146462394624,10.081810571152,7.92717917724025,11.2205544062162,10.3834408363365,0.305518091550949,0,0,2.31486041475121,1.56144531555244,3.90833577536904,5.04173963454978,7.53524089178575,10.4095843701532,8.83984669965463,7.87094486301722,7.50239775143145,0.646703978798527,0.378212160335639,0.175951124163949,0,0,0.348252166522167,0,1.19420560091096,0,0,0,0.207125772535502,0,0,0.23674473558521,0,0,0,0,0,0,0,0,0,0,0,6.9395683026162,19.551876352064,0.330418782983798,0,1.2797295032114,0.464473343720877,0.257734922644187,0.403367049246685,0.444756087689741,0,0,0.329397909448022,0,0,0.38992817423824,0,0,0,0.569003702859245,0.114248512609729,1.1270773567308,0.203651327845314,0.193952487167626,0.280543279561274,0.126473074248515,0.295220295959204,0,0.246794327843601,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.568474235311454,0,0,0,0,0,0,0,0,0.159454768657487,0,0,0,0,0,0,0,8.99083303931635,8.55645312123083,0,0,2.52406575533005,1.17131623288992,1.07711698866399,0.477937595905104,0,0.849229592366497,0.404810701674894,0.584511715822624,0.790575555893047,7.39039027770156,0.283880170416537,0,0.162886959353576,0,0,0.242780636154981,0,0,0.295301892880773,0.307435147943927,0,0,0.712994756769443,0,0,0,0.680879211507576,1.26042765821917,1.03486947026204,0.428674070063185,1.41872186913819,2.67553226403106,1.48094118541909,1.522324745573,0,0.21183207086382,0,0,0,0,0.238744688006273,0.164140899745061,0.291480836629851,7.78786268444141,0,0,0,0,0,0,0,0,0.138199973804424,0,0.790839983952838,1.21991680276109,0.540026704109006,0,0.655087691238533,0,0.330613822901344,0.26175594198403,0,0,2.25477175473676,1.94371509857172,0.992750942742586,1.36115831840833,2.0665571756437,2.02747350588934,1.05621514781179,0.5208175393758,1.46803082195995,0.724752362478018,0,0,0.202725215290164,0.102710957164827,0,0,0,0,0,0,0,0,0.0974578807397524,0,0,0,0.221985953374065,0.358855426437903,0,0,0.187682475451182,0,0,0,12.9892923801925,10.1271552031579,10.8850147553485,13.748254587495,7.53590771747707,15.107877947794,10.1253375034771,8.55610286126019,11.3285602246051,14.497288729051,3.32119512269365,13.5668456956351,4.43907374960749,1.94485373654635,3.5634237646757,4.96377472815038,2.44471400581777,2.88449080134452,1.92551525755089,1.51618327058278,2.02783439912192,3.2066478035633,2.90288673156635,2.36893063898016,2.29741875822453,3.33405583898152,2.89710814862139,2.89363830695558,2.06042950401653,2.50238164228475,2.40008476669791,1.24233064311536,0.953744759789284,2.32554266611726,2.4468438907986,3.29996970777538,1.64635175585495,1.8414879800649,1.90125759384206,1.68342681497322,2.25406534435931,2.56111654176465,5.32000356120596,3.25367366490529,1.54325288784913,6.24526444844865,1.63752125911786,2.57845264857958,1.14772999241306,0.220591419119515,0.231867835620421|short_description=p2@Spnb3}} | ||
|EntrezGene=20743 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|UniProt= | |||
|association_with_transcript=-234bp_to_uc008gao.1_5end | |||
|description=CAGE_peak_2_at_Spnb3_5end | |||
|id=chr19:4712118..4712173,+ | |||
|ontology_enrichment_celltype=CL:0000117!8.59e-18!23;CL:0000337!8.59e-18!23;CL:0000540!1.64e-16!33;CL:0000047!1.64e-16!33;CL:0000031!1.64e-16!33;CL:0000404!1.64e-16!33;CL:0000393!1.55e-11!39;CL:0000211!1.55e-11!39;CL:0000221!6.39e-11!44;CL:0000133!6.39e-11!44;CL:0002319!8.81e-11!43;CL:0000055!2.82e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,9.93e-23,23;CL:0000337,9.93e-23,23;CL:0000540,7.31e-16,33;CL:0000047,7.31e-16,33;CL:0000031,7.31e-16,33;CL:0000404,7.31e-16,33;CL:0000393,7.58e-12,39;CL:0000211,7.58e-12,39;CL:0002319,7.59e-10,43;CL:0000221,2.07e-09,44;CL:0000133,2.07e-09,44;CL:0002609,3.10e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!3.66e-28!71;UBERON:0003075!3.66e-28!71;UBERON:0007284!3.66e-28!71;UBERON:0001017!1.26e-26!73;UBERON:0005743!1.26e-26!73;UBERON:0000073!1.80e-26!75;UBERON:0001016!1.80e-26!75;UBERON:0004121!2.35e-25!102;UBERON:0000924!2.35e-25!102;UBERON:0006601!2.35e-25!102;UBERON:0000033!3.33e-25!63;UBERON:0001049!8.67e-24!52;UBERON:0005068!8.67e-24!52;UBERON:0006241!8.67e-24!52;UBERON:0007135!8.67e-24!52;UBERON:0003056!1.76e-23!49;UBERON:0000955!2.29e-22!50;UBERON:0006238!2.29e-22!50;UBERON:0002616!7.66e-22!49;UBERON:0002020!1.05e-19!34;UBERON:0003080!3.45e-19!40;UBERON:0002780!1.80e-18!39;UBERON:0001890!1.80e-18!39;UBERON:0006240!1.80e-18!39;UBERON:0002791!2.57e-16!29;UBERON:0003528!2.57e-16!29;UBERON:0001893!2.57e-16!29;UBERON:0007811!2.12e-12!86;UBERON:0000153!4.91e-11!94;UBERON:0000956!7.64e-11!21;UBERON:0001869!7.64e-11!21;UBERON:0000203!7.64e-11!21;UBERON:0002619!3.07e-08!17;UBERON:0002021!5.06e-07!10;UBERON:0000411!5.06e-07!10;UBERON:0001950!5.06e-07!10;UBERON:0002420!7.58e-07!8;UBERON:0007245!7.58e-07!8;UBERON:0010009!7.58e-07!8;UBERON:0010011!7.58e-07!8;UBERON:0000454!7.58e-07!8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,8.33e-37,64;UBERON:0003075,8.33e-37,64;UBERON:0007284,8.33e-37,64;UBERON:0000073,6.10e-32,54;UBERON:0001049,7.32e-30,52;UBERON:0005068,7.32e-30,52;UBERON:0006241,7.32e-30,52;UBERON:0007135,7.32e-30,52;UBERON:0010371,1.55e-29,73;UBERON:0003056,7.58e-29,49;UBERON:0001017,9.64e-29,73;UBERON:0001016,2.12e-27,75;UBERON:0004121,9.57e-27,95;UBERON:0000924,9.57e-27,95;UBERON:0006601,9.57e-27,95;UBERON:0002020,6.93e-26,34;UBERON:0000955,2.67e-25,47;UBERON:0006238,2.67e-25,47;UBERON:0002616,1.24e-24,46;UBERON:0003080,2.88e-23,40;UBERON:0002780,2.43e-22,39;UBERON:0001890,2.43e-22,39;UBERON:0006240,2.43e-22,39;UBERON:0003528,1.93e-21,29;UBERON:0002791,1.93e-21,29;UBERON:0001893,1.93e-21,29;UBERON:0010314,2.38e-21,92;UBERON:0000956,2.96e-14,21;UBERON:0001869,2.96e-14,21;UBERON:0000203,2.96e-14,21;UBERON:0002619,7.86e-11,17;UBERON:0002021,1.09e-08,10;UBERON:0000411,1.09e-08,10;UBERON:0001950,1.09e-08,10;UBERON:0002420,1.85e-08,8;UBERON:0007245,1.85e-08,8;UBERON:0010009,1.85e-08,8;UBERON:0010011,1.85e-08,8;UBERON:0000454,1.85e-08,8;UBERON:0003076,5.15e-07,12;UBERON:0003057,5.15e-07,12 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.87095238332354,0,0,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,38.4401275633236,31.2104677770499,32.3254015788151,0,0,0,0,0,0,0.384218305321555,21.9821978093973,22.8160035780557,23.135745748652,12.8542942981712,12.589506834242,23.1507610516263,22.6195311603038,33.0918763179608,18.7196997698961,12.7687338085188,17.2039317246993,30.9932776165956,23.6038120494217,32.8175423450759,22.0554569211091,14.069065250792,17.72459674211,15.3206864446307,15.0913981647049,28.1463163196204,0.151452386666368,0.453429360640713,0,0,0,0,0,0,0.280888840263504,0,0,0,0.985903938436763,0,0,0,0.432982082022428,0.253359865475099,0,0.11418387971906,0,0,0.693941307064543,1.52232739156071,1.38369298353635,1.05505848386836,0.705532242814229,0,0,0,0,0,0.220841518460394,0,0,15.8101630386235,12.9856958224342,0.255457055208591,0,0,0,18.4242486467932,7.32000964509802,17.2146462394624,10.081810571152,7.92717917724025,11.2205544062162,10.3834408363365,0.305518091550949,0,0,2.31486041475121,1.56144531555244,3.90833577536904,5.04173963454978,7.53524089178575,10.4095843701532,8.83984669965463,7.87094486301722,7.50239775143145,0.646703978798527,0.378212160335639,0.175951124163949,0,0,0.348252166522167,0,1.19420560091096,0,0,0,0.207125772535502,0,0,0.23674473558521,0,0,0,0,0,0,0,0,0,0,0,6.9395683026162,19.551876352064,0.330418782983798,0,1.2797295032114,0.464473343720877,0.257734922644187,0.403367049246685,0.444756087689741,0,0,0.329397909448022,0,0,0.38992817423824,0,0,0,0.569003702859245,0.114248512609729,1.1270773567308,0.203651327845314,0.193952487167626,0.280543279561274,0.126473074248515,0.295220295959204,0,0.246794327843601,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.568474235311454,0,0,0,0,0,0,0,0,0.159454768657487,0,0,0,0,0,0,0,8.99083303931635,8.55645312123083,0,0,2.52406575533005,1.17131623288992,1.07711698866399,0.477937595905104,0,0.849229592366497,0.404810701674894,0.584511715822624,0.790575555893047,7.39039027770156,0.283880170416537,0,0.162886959353576,0,0,0.242780636154981,0,0,0.295301892880773,0.307435147943927,0,0,0.712994756769443,0,0,0,0.680879211507576,1.26042765821917,1.03486947026204,0.428674070063185,1.41872186913819,2.67553226403106,1.48094118541909,1.522324745573,0,0.21183207086382,0,0,0,0,0.238744688006273,0.164140899745061,0.291480836629851,7.78786268444141,0,0,0,0,0,0,0,0,0.138199973804424,0,0.790839983952838,1.21991680276109,0.540026704109006,0,0.655087691238533,0,0.330613822901344,0.26175594198403,0,0,2.25477175473676,1.94371509857172,0.992750942742586,1.36115831840833,2.0665571756437,2.02747350588934,1.05621514781179,0.5208175393758,1.46803082195995,0.724752362478018,0,0,0.202725215290164,0.102710957164827,0,0,0,0,0,0,0,0,0.0974578807397524,0,0,0,0.221985953374065,0.358855426437903,0,0,0.187682475451182,0,0,0,12.9892923801925,10.1271552031579,10.8850147553485,13.748254587495,7.53590771747707,15.107877947794,10.1253375034771,8.55610286126019,11.3285602246051,14.497288729051,3.32119512269365,13.5668456956351,4.43907374960749,1.94485373654635,3.5634237646757,4.96377472815038,2.44471400581777,2.88449080134452,1.92551525755089,1.51618327058278,2.02783439912192,3.2066478035633,2.90288673156635,2.36893063898016,2.29741875822453,3.33405583898152,2.89710814862139,2.89363830695558,2.06042950401653,2.50238164228475,2.40008476669791,1.24233064311536,0.953744759789284,2.32554266611726,2.4468438907986,3.29996970777538,1.64635175585495,1.8414879800649,1.90125759384206,1.68342681497322,2.25406534435931,2.56111654176465,5.32000356120596,3.25367366490529,1.54325288784913,6.24526444844865,1.63752125911786,2.57845264857958,1.14772999241306,0.220591419119515,0.231867835620421 | |||
|short_description=p2@Spnb3 | |||
}} |
Revision as of 17:55, 13 September 2013
Short description: | p2@Spnb3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Spnb3_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | -234bp_to_uc008gao.1_5end |
EntrezGene: | Spnb3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 9.93e-23 | 23 |
neuroblast (sensu Vertebrata) | 9.93e-23 | 23 |
neuron | 7.31e-16 | 33 |
neuronal stem cell | 7.31e-16 | 33 |
neuroblast | 7.31e-16 | 33 |
electrically signaling cell | 7.31e-16 | 33 |
electrically responsive cell | 7.58e-12 | 39 |
electrically active cell | 7.58e-12 | 39 |
neural cell | 7.59e-10 | 43 |
ectodermal cell | 2.07e-09 | 44 |
neurectodermal cell | 2.07e-09 | 44 |
neuron of cerebral cortex | 3.10e-07 | 6 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.