FFCP PHASE1:Mm9::chr11:51449224..51449286,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=66089|HGNC=|MCL_coexpression_id=788|UniProt=|association_with_transcript=0bp_to_ENSMUST00000132854_5end|description=CAGE_peak_1_at_Rmnd5b_5end|id=chr11:51449224..51449286,-|ontology_enrichment_celltype=CL:0000055!1.54e-11!50;CL:0000221!5.35e-10!44;CL:0000133!5.35e-10!44;CL:0002319!6.19e-10!43;CL:0000117!1.79e-09!23;CL:0000337!1.79e-09!23;CL:0000393!2.11e-09!39;CL:0000211!2.11e-09!39;CL:0000540!6.02e-08!33;CL:0000047!6.02e-08!33;CL:0000031!6.02e-08!33;CL:0000404!6.02e-08!33|ontology_enrichment_celltype_v019_2=CL:0000221,5.35e-10,44;CL:0000133,5.35e-10,44;CL:0002319,6.19e-10,43;CL:0000117,1.79e-09,23;CL:0000337,1.79e-09,23;CL:0000393,2.11e-09,39;CL:0000211,2.11e-09,39;CL:0000540,6.02e-08,33;CL:0000047,6.02e-08,33;CL:0000031,6.02e-08,33;CL:0000404,6.02e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.37e-21!73;UBERON:0005743!1.37e-21!73;UBERON:0000073!2.76e-21!75;UBERON:0001016!2.76e-21!75;UBERON:0004121!2.97e-19!102;UBERON:0000924!2.97e-19!102;UBERON:0006601!2.97e-19!102;UBERON:0001049!1.96e-18!52;UBERON:0005068!1.96e-18!52;UBERON:0006241!1.96e-18!52;UBERON:0007135!1.96e-18!52;UBERON:0000955!8.37e-18!50;UBERON:0006238!8.37e-18!50;UBERON:0002616!1.91e-17!49;UBERON:0002020!1.31e-16!34;UBERON:0002346!6.01e-16!71;UBERON:0003075!6.01e-16!71;UBERON:0007284!6.01e-16!71;UBERON:0002791!6.25e-15!29;UBERON:0003528!6.25e-15!29;UBERON:0001893!6.25e-15!29;UBERON:0003080!6.80e-15!40;UBERON:0002780!1.99e-14!39;UBERON:0001890!1.99e-14!39;UBERON:0006240!1.99e-14!39;UBERON:0000033!6.71e-13!63;UBERON:0003056!2.91e-11!49;UBERON:0007811!5.33e-11!86;UBERON:0000956!8.50e-11!21;UBERON:0001869!8.50e-11!21;UBERON:0000203!8.50e-11!21;UBERON:0002619!1.12e-09!17;UBERON:0000153!5.12e-09!94;UBERON:0002021!3.70e-07!10;UBERON:0000411!3.70e-07!10;UBERON:0001950!3.70e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.37e-21,73;UBERON:0001016,2.76e-21,75;UBERON:0000073,2.53e-19,54;UBERON:0001049,1.96e-18,52;UBERON:0005068,1.96e-18,52;UBERON:0006241,1.96e-18,52;UBERON:0007135,1.96e-18,52;UBERON:0004121,1.91e-17,95;UBERON:0000924,1.91e-17,95;UBERON:0006601,1.91e-17,95;UBERON:0000955,8.93e-17,47;UBERON:0006238,8.93e-17,47;UBERON:0002020,1.31e-16,34;UBERON:0002616,2.01e-16,46;UBERON:0003528,6.25e-15,29;UBERON:0002791,6.25e-15,29;UBERON:0001893,6.25e-15,29;UBERON:0003080,6.80e-15,40;UBERON:0010371,1.69e-14,73;UBERON:0002780,1.99e-14,39;UBERON:0001890,1.99e-14,39;UBERON:0006240,1.99e-14,39;UBERON:0002346,2.28e-14,64;UBERON:0003075,2.28e-14,64;UBERON:0007284,2.28e-14,64;UBERON:0003056,2.91e-11,49;UBERON:0000956,8.50e-11,21;UBERON:0001869,8.50e-11,21;UBERON:0000203,8.50e-11,21;UBERON:0010314,4.86e-10,92;UBERON:0002619,1.12e-09,17;UBERON:0002021,3.70e-07,10;UBERON:0000411,3.70e-07,10;UBERON:0001950,3.70e-07,10|phase1_expression=15.534438169165,14.6569671208532,16.8349718574128,12.0985684522732,17.5313505481222,9.56911849897772,9.1108929832255,31.5060909197446,6.19470377467334,8.42632294759177,4.96532107853964,4.30769658574817,31.5009343073419,41.1750095393478,13.6575002344422,15.1856450542369,13.2916756844348,24.4483178152634,20.8413939080723,20.3707032863054,26.0232467862274,16.9787526553514,18.2839852397255,9.91953021319121,11.2410547722913,9.18771142584032,8.18447792702242,9.69620547086501,10.8313349090133,8.56902441183765,11.3082560434205,31.1165029995219,24.6025915033828,15.8481681015439,6.64358725427932,4.65457007003779,5.9209113316087,62.3612129797993,53.9121387721422,44.4995182377729,81.764176836311,64.8893210710523,80.1092082501403,25.9347445029689,26.2566251858543,17.2533947031981,20.342174953049,18.7501634487184,29.8773208518882,25.6647466778054,21.2779360870551,23.0004102983955,14.2615215149076,23.211588544363,21.1739093459752,22.6388303711633,23.2092086350393,21.1425557833751,27.1104057551861,34.9134046319542,32.9592329823213,17.958760199664,18.6751907183339,27.8968912357234,36.5880554149781,39.7868864369816,25.7656095045828,25.3584081512226,20.3231640124616,22.5459917013923,22.9254207873006,24.2803336743233,25.6207507503872,23.7632150477011,20.1275489138296,25.7381260250806,28.6301290598411,22.8560335172486,21.0440950561054,28.8830970129125,29.916459457988,33.3384557156326,30.4309468911505,33.2029939918691,24.90611438762,23.8649154233671,22.6370972470574,26.0959224155421,13.7821671866395,19.9508918681914,6.95674772884027,18.9293252935905,5.439770669662,19.9690180905992,15.5946340187441,12.9927797258227,20.6453297593675,14.1457167739788,10.9110121933205,17.3136391510067,18.7321748302985,11.5493829672886,10.1922095882658,28.4426681261332,3.89683873820185,5.06719730950197,8.08839112023653,13.1311461676919,19.1614033898907,28.6493328395112,14.7462527751215,19.485790611977,21.2166257475574,21.1011696773672,22.5770317700553,26.1386509965725,16.0676729027343,14.1707369781513,12.3845477272982,16.3384518446883,13.6921741445444,8.727754556434,13.0474232852686,26.9358333250623,26.1808383516819,13.0283098156382,6.23038647430785,7.7987355029143,5.59108999121485,27.5614776504874,37.0575488283087,38.0732686901979,38.4151747624931,43.4716277461562,23.6878370797899,27.9054972476543,14.4611896667449,16.5461270911424,27.0413351524032,17.8875577503503,9.49879233627737,11.4951052216736,9.00310649026746,14.6183673300644,16.2607232971674,14.9893052733274,16.8663104207512,17.074422468775,7.54487975264948,9.64441008855878,11.2608719464927,13.8093311429372,12.2340789659263,18.1091126591527,14.1989674121481,10.5488161413801,7.02213187313235,8.23513302767089,11.3665399758237,11.5990432619881,9.14651633926275,10.0834754418168,11.3637473080901,11.0187969778546,8.02188987014367,11.39416329277,16.901224288176,13.077718345123,14.1521470925593,10.8350526292203,14.4302480991623,14.4737987551079,13.3925570327541,11.6759584321523,39.1139304329277,30.2539560395096,10.2429822724977,11.3713743665324,5.75878276445132,7.89604684325491,8.89185483122444,9.88249270654378,12.8979265430025,16.1691782195675,16.1339880925134,14.987604879885,14.8287773192159,18.7019083718682,13.062593836981,8.08937467788799,8.64552199498777,10.3553462092271,8.72472344384176,10.1681176222659,5.63538678365402,7.94240178596726,9.30971938404604,10.5203729835478,10.8766843853723,16.0895061297766,13.1878931386755,14.1906738510071,19.862326014839,11.3454671886944,17.4937505650751,14.8408994174003,12.3744674046987,15.9176925436595,12.2220408855082,14.9601991474422,8.43103179230184,14.5517548989683,4.31304619582064,11.1642284300551,11.5453939052387,17.1753637004036,17.7603439386693,21.2275149399882,20.3228509183265,6.06372517665551,7.82231886921724,9.67546988918572,8.44884893838608,10.7204004762762,14.0445748122748,18.3425628986331,14.817703545982,18.1601045511995,18.4967531642685,20.1551877100358,21.0675677876393,24.590339958857,18.0949540727127,14.6854534631052,18.1952781017043,10.7615331058846,23.2798355482298,20.0431984072667,13.114795630134,17.4204939771017,15.4599027513966,14.4462335389756,19.1726823982191,13.860190281248,19.6062833192507,16.1353622549635,21.4549671887694,15.7818163272108,18.1832377855401,24.0990987316355,22.5684735481147,19.0530195923963,16.2886959353576,14.6823409445557,9.2921596837974,10.9251286269742,13.302236506449,9.8074641473067,12.1073776081117,13.8345816574767,18.3484088149437,12.7236805317127,18.8943610543902,15.485801138855,14.7586052004998,7.21948802737308,20.4263763452273,12.0640933000978,16.2991941566271,13.5032332069903,17.2020026633005,19.6205699362278,20.404078554663,24.3571959291679,23.2324990983073,19.4885505194715,19.4064990288366,19.7863503529776,17.9225513632455,17.0685577546681,26.8587774007057,21.6665987663481,13.1166376483433,20.2113579191456,17.428829841381,17.1301100409475,11.6672552242918,15.0694765603753,16.9500842374071,18.3022538565218,11.3885548095883,14.1350966846895,12.2997976685937,21.9574242143476,8.85740782027179,11.7925290933572,11.1245501046455,10.8725913927524,10.2630404960703,16.1837215661785,14.9602754862858,16.4906243449939,12.3134224627203,13.0481255748254,110.483815982101,10.9147078612105,14.8912641411388,17.3061557626202,18.0823752868824,20.9505595608565,16.8994423649886,18.0984094933091,19.5038380631822,45.6593988361151,63.0785713704725,25.2808896502543,16.6234676537935,12.7361586884386,15.0708154654242,12.1738153053887,16.2918710920637,20.1928355193548,18.9042594783459,16.5584977914962,22.176180736605,19.2578013611365,19.9788655516492,20.3969104277498,25.9466722843083,10.4295976462997,10.433339808581,8.97138566094757,11.5840385291214,22.2168033137019,18.0175176433135,15.7510396869848,11.1471557121114,18.0565957452731,35.0146142422581,40.0482955761244,37.8111038870002,28.1839219043648,40.4198686664679,30.9711497929777,42.5264175146038,50.4359747611127,38.5171047636574,35.2077011991238,6.43481555021895,15.1629451892392,16.0489589408886,10.2104821168684,18.2363451486345,14.3397936591011,14.0015438515018,11.9500333198559,17.9714757371417,15.6672271293554,17.4900716924265,13.2038438970253,10.4878488366268,13.9574832242615,13.8993834872584,14.2888107384922,14.7173093949966,12.5390993301408,15.6592642305257,13.8366984926333,13.3719008430312,10.6485483695602,11.2065009275241,10.7556348307923,14.3987352035456,11.5922012811597,17.0123014771678,11.5750673032651,12.6297825876651,11.7839877048125,13.1684870117833,13.3966096030766,14.3230865109391,13.789378865551,16.0112487114347,26.7297318393602,19.8841867178597,19.7681369724434,20.0852748672286,16.3237650148441,15.5351449865682|short_description=p1@Rmnd5b}} | ||
|EntrezGene=66089 | |||
|HGNC= | |||
|MCL_coexpression_id=788 | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000132854_5end | |||
|description=CAGE_peak_1_at_Rmnd5b_5end | |||
|id=chr11:51449224..51449286,- | |||
|ontology_enrichment_celltype=CL:0000055!1.54e-11!50;CL:0000221!5.35e-10!44;CL:0000133!5.35e-10!44;CL:0002319!6.19e-10!43;CL:0000117!1.79e-09!23;CL:0000337!1.79e-09!23;CL:0000393!2.11e-09!39;CL:0000211!2.11e-09!39;CL:0000540!6.02e-08!33;CL:0000047!6.02e-08!33;CL:0000031!6.02e-08!33;CL:0000404!6.02e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,5.35e-10,44;CL:0000133,5.35e-10,44;CL:0002319,6.19e-10,43;CL:0000117,1.79e-09,23;CL:0000337,1.79e-09,23;CL:0000393,2.11e-09,39;CL:0000211,2.11e-09,39;CL:0000540,6.02e-08,33;CL:0000047,6.02e-08,33;CL:0000031,6.02e-08,33;CL:0000404,6.02e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.37e-21!73;UBERON:0005743!1.37e-21!73;UBERON:0000073!2.76e-21!75;UBERON:0001016!2.76e-21!75;UBERON:0004121!2.97e-19!102;UBERON:0000924!2.97e-19!102;UBERON:0006601!2.97e-19!102;UBERON:0001049!1.96e-18!52;UBERON:0005068!1.96e-18!52;UBERON:0006241!1.96e-18!52;UBERON:0007135!1.96e-18!52;UBERON:0000955!8.37e-18!50;UBERON:0006238!8.37e-18!50;UBERON:0002616!1.91e-17!49;UBERON:0002020!1.31e-16!34;UBERON:0002346!6.01e-16!71;UBERON:0003075!6.01e-16!71;UBERON:0007284!6.01e-16!71;UBERON:0002791!6.25e-15!29;UBERON:0003528!6.25e-15!29;UBERON:0001893!6.25e-15!29;UBERON:0003080!6.80e-15!40;UBERON:0002780!1.99e-14!39;UBERON:0001890!1.99e-14!39;UBERON:0006240!1.99e-14!39;UBERON:0000033!6.71e-13!63;UBERON:0003056!2.91e-11!49;UBERON:0007811!5.33e-11!86;UBERON:0000956!8.50e-11!21;UBERON:0001869!8.50e-11!21;UBERON:0000203!8.50e-11!21;UBERON:0002619!1.12e-09!17;UBERON:0000153!5.12e-09!94;UBERON:0002021!3.70e-07!10;UBERON:0000411!3.70e-07!10;UBERON:0001950!3.70e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.37e-21,73;UBERON:0001016,2.76e-21,75;UBERON:0000073,2.53e-19,54;UBERON:0001049,1.96e-18,52;UBERON:0005068,1.96e-18,52;UBERON:0006241,1.96e-18,52;UBERON:0007135,1.96e-18,52;UBERON:0004121,1.91e-17,95;UBERON:0000924,1.91e-17,95;UBERON:0006601,1.91e-17,95;UBERON:0000955,8.93e-17,47;UBERON:0006238,8.93e-17,47;UBERON:0002020,1.31e-16,34;UBERON:0002616,2.01e-16,46;UBERON:0003528,6.25e-15,29;UBERON:0002791,6.25e-15,29;UBERON:0001893,6.25e-15,29;UBERON:0003080,6.80e-15,40;UBERON:0010371,1.69e-14,73;UBERON:0002780,1.99e-14,39;UBERON:0001890,1.99e-14,39;UBERON:0006240,1.99e-14,39;UBERON:0002346,2.28e-14,64;UBERON:0003075,2.28e-14,64;UBERON:0007284,2.28e-14,64;UBERON:0003056,2.91e-11,49;UBERON:0000956,8.50e-11,21;UBERON:0001869,8.50e-11,21;UBERON:0000203,8.50e-11,21;UBERON:0010314,4.86e-10,92;UBERON:0002619,1.12e-09,17;UBERON:0002021,3.70e-07,10;UBERON:0000411,3.70e-07,10;UBERON:0001950,3.70e-07,10 | |||
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| |||
|short_description=p1@Rmnd5b | |||
}} |
Revision as of 19:51, 12 September 2013
Short description: | p1@Rmnd5b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rmnd5b_5end |
Coexpression cluster: | MCL_coexpression_mm9:788 |
Association with transcript: | 0bp_to_ENSMUST00000132854_5end |
EntrezGene: | Rmnd5b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 5.35e-10 | 44 |
neurectodermal cell | 5.35e-10 | 44 |
neural cell | 6.19e-10 | 43 |
CNS neuron (sensu Vertebrata) | 1.79e-09 | 23 |
neuroblast (sensu Vertebrata) | 1.79e-09 | 23 |
electrically responsive cell | 2.11e-09 | 39 |
electrically active cell | 2.11e-09 | 39 |
neuron | 6.02e-08 | 33 |
neuronal stem cell | 6.02e-08 | 33 |
neuroblast | 6.02e-08 | 33 |
electrically signaling cell | 6.02e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.37e-21 | 73 |
nervous system | 2.76e-21 | 75 |
regional part of nervous system | 2.53e-19 | 54 |
neural tube | 1.96e-18 | 52 |
neural rod | 1.96e-18 | 52 |
future spinal cord | 1.96e-18 | 52 |
neural keel | 1.96e-18 | 52 |
ectoderm-derived structure | 1.91e-17 | 95 |
ectoderm | 1.91e-17 | 95 |
presumptive ectoderm | 1.91e-17 | 95 |
brain | 8.93e-17 | 47 |
future brain | 8.93e-17 | 47 |
gray matter | 1.31e-16 | 34 |
regional part of brain | 2.01e-16 | 46 |
brain grey matter | 6.25e-15 | 29 |
regional part of telencephalon | 6.25e-15 | 29 |
telencephalon | 6.25e-15 | 29 |
anterior neural tube | 6.80e-15 | 40 |
ecto-epithelium | 1.69e-14 | 73 |
regional part of forebrain | 1.99e-14 | 39 |
forebrain | 1.99e-14 | 39 |
future forebrain | 1.99e-14 | 39 |
neurectoderm | 2.28e-14 | 64 |
neural plate | 2.28e-14 | 64 |
presumptive neural plate | 2.28e-14 | 64 |
pre-chordal neural plate | 2.91e-11 | 49 |
cerebral cortex | 8.50e-11 | 21 |
cerebral hemisphere | 8.50e-11 | 21 |
pallium | 8.50e-11 | 21 |
structure with developmental contribution from neural crest | 4.86e-10 | 92 |
regional part of cerebral cortex | 1.12e-09 | 17 |
occipital lobe | 3.70e-07 | 10 |
visual cortex | 3.70e-07 | 10 |
neocortex | 3.70e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.