FFCP PHASE1:Mm9::chr2:156439400..156439442,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=228836|HGNC=|MCL_coexpression_id=1|UniProt=B1AZP2|association_with_transcript=0bp_to_ENSMUST00000109567,ENSMUST00000139136,ENSMUST00000169464,NM_146128,uc008nnr.1_5end|description=CAGE_peak_4_at_Dlgap4_5end|id=chr2:156439400..156439442,+|ontology_enrichment_celltype=CL:0000117!3.05e-12!23;CL:0000337!3.05e-12!23;CL:0002319!4.19e-10!43;CL:0000221!9.52e-10!44;CL:0000133!9.52e-10!44;CL:0000540!4.24e-08!33;CL:0000047!4.24e-08!33;CL:0000031!4.24e-08!33;CL:0000404!4.24e-08!33;CL:0000055!1.30e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,4.22e-13,23;CL:0000337,4.22e-13,23;CL:0002319,8.76e-10,43;CL:0000221,3.33e-09,44;CL:0000133,3.33e-09,44;CL:0000540,7.15e-08,33;CL:0000047,7.15e-08,33;CL:0000031,7.15e-08,33;CL:0000404,7.15e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!1.54e-28!71;UBERON:0003075!1.54e-28!71;UBERON:0007284!1.54e-28!71;UBERON:0004121!3.35e-28!102;UBERON:0000924!3.35e-28!102;UBERON:0006601!3.35e-28!102;UBERON:0001017!1.45e-27!73;UBERON:0005743!1.45e-27!73;UBERON:0000073!3.28e-26!75;UBERON:0001016!3.28e-26!75;UBERON:0001049!4.97e-26!52;UBERON:0005068!4.97e-26!52;UBERON:0006241!4.97e-26!52;UBERON:0007135!4.97e-26!52;UBERON:0000955!4.17e-25!50;UBERON:0006238!4.17e-25!50;UBERON:0000033!2.43e-24!63;UBERON:0002616!2.54e-24!49;UBERON:0003056!3.14e-20!49;UBERON:0002020!5.71e-20!34;UBERON:0003080!2.90e-19!40;UBERON:0002780!1.22e-18!39;UBERON:0001890!1.22e-18!39;UBERON:0006240!1.22e-18!39;UBERON:0002791!4.92e-17!29;UBERON:0003528!4.92e-17!29;UBERON:0001893!4.92e-17!29;UBERON:0000956!9.96e-13!21;UBERON:0001869!9.96e-13!21;UBERON:0000203!9.96e-13!21;UBERON:0000153!1.62e-12!94;UBERON:0007811!7.67e-12!86;UBERON:0002619!7.43e-11!17;UBERON:0000468!5.42e-09!333;UBERON:0002021!4.44e-08!10;UBERON:0000411!4.44e-08!10;UBERON:0001950!4.44e-08!10;UBERON:0003076!2.71e-07!12;UBERON:0003057!2.71e-07!12;UBERON:0000922!8.59e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.34e-29,54;UBERON:0001017,1.38e-28,73;UBERON:0002346,1.89e-28,64;UBERON:0003075,1.89e-28,64;UBERON:0007284,1.89e-28,64;UBERON:0001049,5.26e-28,52;UBERON:0005068,5.26e-28,52;UBERON:0006241,5.26e-28,52;UBERON:0007135,5.26e-28,52;UBERON:0001016,7.91e-27,75;UBERON:0010371,5.60e-26,73;UBERON:0004121,7.10e-25,95;UBERON:0000924,7.10e-25,95;UBERON:0006601,7.10e-25,95;UBERON:0000955,7.48e-25,47;UBERON:0006238,7.48e-25,47;UBERON:0002616,5.08e-24,46;UBERON:0010314,1.18e-22,92;UBERON:0003056,9.81e-22,49;UBERON:0002020,1.88e-21,34;UBERON:0003080,1.08e-20,40;UBERON:0002780,5.15e-20,39;UBERON:0001890,5.15e-20,39;UBERON:0006240,5.15e-20,39;UBERON:0003528,2.80e-18,29;UBERON:0002791,2.80e-18,29;UBERON:0001893,2.80e-18,29;UBERON:0000956,1.26e-13,21;UBERON:0001869,1.26e-13,21;UBERON:0000203,1.26e-13,21;UBERON:0002619,1.33e-11,17;UBERON:0002021,1.32e-08,10;UBERON:0000411,1.32e-08,10;UBERON:0001950,1.32e-08,10;UBERON:0003076,9.32e-08,12;UBERON:0003057,9.32e-08,12|phase1_expression=1.92178616525753,0,0,0,0,0,0,0.129123323441576,0.140788722151667,1.63845168425395,0.34243593645101,0.797721589953364,0,0,0,0,0,0,0,0,18.7095238332354,0,0,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.881277725829041,1.21652317463417,2.20256102594018,3.9119567217402,20.7123898561424,16.0370913396164,15.5543919259427,5.31948402176378,15.8127820801469,0,0,0,0,0,1.03134418455488,16.9945827122062,9.52183762689659,20.9164363157039,2.71075625655306,0,0,0,0,6.89080254192331,13.0634223809329,11.0947885170071,12.9605700798423,9.88527318351495,29.136400409188,21.2033799313549,9.0643191419066,8.33855597858656,4.5960939330501,26.4278114398533,54.39480602429,38.2480267808046,14.2437190748609,16.8337264228434,13.5437476344758,16.4717969410815,19.1339287410771,25.5173073787273,26.8112012781038,18.7930618654816,21.2495368240843,0.227178579999552,0.226714680320357,0.579728977403356,0,0,0,0,0,2.38755514223978,0,0,0,0.563373679106722,0,0,0,0,0,0,1.48439043634778,2.58937883647172,10.0940654564081,3.64319186208885,4.26251669636998,3.92046345335299,5.27529241934179,4.9387256996996,5.02666365318702,0.494389935468748,1.87979163995885,0,0.485300549842228,0.441683036920787,0,0,47.7232699128822,50.8955497556696,0.255457055208591,0,0,0,33.7028938660851,79.605104890441,23.4973638451056,78.2209440865244,80.5503690590541,46.752310025901,60.0292673350703,2.13862664085664,0.497627882440372,0,6.52369753248069,2.08192708740326,1.37941262660084,2.88099407688559,2.41127708537144,4.69451844144162,3.84341160854549,5.90320864726292,13.1938719076898,1.5089759505299,1.32374256117473,3.51902248327898,3.94552318369635,3.05851974148158,3.48252166522167,2.05782136407943,1.39323986772945,0,0,0,0.414251545071004,0,0.36012412292203,0.473489471170421,0.196764231747404,0.462801338662135,0.930135779001631,1.3413670069981,1.86824547787471,3.78487654801005,1.14917224855367,6.08016071593918,6.87139940899062,3.07370161407471,6.44190810049784,66.2413337977001,16.5676425930648,0,1.05780226665418,1.06644125267617,2.32236671860439,1.54640953586512,2.2185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| ||
|EntrezGene=228836 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=B1AZP2 | |||
|association_with_transcript=0bp_to_ENSMUST00000109567,ENSMUST00000139136,ENSMUST00000169464,NM_146128,uc008nnr.1_5end | |||
|description=CAGE_peak_4_at_Dlgap4_5end | |||
|id=chr2:156439400..156439442,+ | |||
|ontology_enrichment_celltype=CL:0000117!3.05e-12!23;CL:0000337!3.05e-12!23;CL:0002319!4.19e-10!43;CL:0000221!9.52e-10!44;CL:0000133!9.52e-10!44;CL:0000540!4.24e-08!33;CL:0000047!4.24e-08!33;CL:0000031!4.24e-08!33;CL:0000404!4.24e-08!33;CL:0000055!1.30e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.22e-13,23;CL:0000337,4.22e-13,23;CL:0002319,8.76e-10,43;CL:0000221,3.33e-09,44;CL:0000133,3.33e-09,44;CL:0000540,7.15e-08,33;CL:0000047,7.15e-08,33;CL:0000031,7.15e-08,33;CL:0000404,7.15e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!1.54e-28!71;UBERON:0003075!1.54e-28!71;UBERON:0007284!1.54e-28!71;UBERON:0004121!3.35e-28!102;UBERON:0000924!3.35e-28!102;UBERON:0006601!3.35e-28!102;UBERON:0001017!1.45e-27!73;UBERON:0005743!1.45e-27!73;UBERON:0000073!3.28e-26!75;UBERON:0001016!3.28e-26!75;UBERON:0001049!4.97e-26!52;UBERON:0005068!4.97e-26!52;UBERON:0006241!4.97e-26!52;UBERON:0007135!4.97e-26!52;UBERON:0000955!4.17e-25!50;UBERON:0006238!4.17e-25!50;UBERON:0000033!2.43e-24!63;UBERON:0002616!2.54e-24!49;UBERON:0003056!3.14e-20!49;UBERON:0002020!5.71e-20!34;UBERON:0003080!2.90e-19!40;UBERON:0002780!1.22e-18!39;UBERON:0001890!1.22e-18!39;UBERON:0006240!1.22e-18!39;UBERON:0002791!4.92e-17!29;UBERON:0003528!4.92e-17!29;UBERON:0001893!4.92e-17!29;UBERON:0000956!9.96e-13!21;UBERON:0001869!9.96e-13!21;UBERON:0000203!9.96e-13!21;UBERON:0000153!1.62e-12!94;UBERON:0007811!7.67e-12!86;UBERON:0002619!7.43e-11!17;UBERON:0000468!5.42e-09!333;UBERON:0002021!4.44e-08!10;UBERON:0000411!4.44e-08!10;UBERON:0001950!4.44e-08!10;UBERON:0003076!2.71e-07!12;UBERON:0003057!2.71e-07!12;UBERON:0000922!8.59e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.34e-29,54;UBERON:0001017,1.38e-28,73;UBERON:0002346,1.89e-28,64;UBERON:0003075,1.89e-28,64;UBERON:0007284,1.89e-28,64;UBERON:0001049,5.26e-28,52;UBERON:0005068,5.26e-28,52;UBERON:0006241,5.26e-28,52;UBERON:0007135,5.26e-28,52;UBERON:0001016,7.91e-27,75;UBERON:0010371,5.60e-26,73;UBERON:0004121,7.10e-25,95;UBERON:0000924,7.10e-25,95;UBERON:0006601,7.10e-25,95;UBERON:0000955,7.48e-25,47;UBERON:0006238,7.48e-25,47;UBERON:0002616,5.08e-24,46;UBERON:0010314,1.18e-22,92;UBERON:0003056,9.81e-22,49;UBERON:0002020,1.88e-21,34;UBERON:0003080,1.08e-20,40;UBERON:0002780,5.15e-20,39;UBERON:0001890,5.15e-20,39;UBERON:0006240,5.15e-20,39;UBERON:0003528,2.80e-18,29;UBERON:0002791,2.80e-18,29;UBERON:0001893,2.80e-18,29;UBERON:0000956,1.26e-13,21;UBERON:0001869,1.26e-13,21;UBERON:0000203,1.26e-13,21;UBERON:0002619,1.33e-11,17;UBERON:0002021,1.32e-08,10;UBERON:0000411,1.32e-08,10;UBERON:0001950,1.32e-08,10;UBERON:0003076,9.32e-08,12;UBERON:0003057,9.32e-08,12 | |||
|phase1_expression=1.92178616525753,0,0,0,0,0,0,0.129123323441576,0.140788722151667,1.63845168425395,0.34243593645101,0.797721589953364,0,0,0,0,0,0,0,0,18.7095238332354,0,0,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.881277725829041,1.21652317463417,2.20256102594018,3.9119567217402,20.7123898561424,16.0370913396164,15.5543919259427,5.31948402176378,15.8127820801469,0,0,0,0,0,1.03134418455488,16.9945827122062,9.52183762689659,20.9164363157039,2.71075625655306,0,0,0,0,6.89080254192331,13.0634223809329,11.0947885170071,12.9605700798423,9.88527318351495,29.136400409188,21.2033799313549,9.0643191419066,8.33855597858656,4.5960939330501,26.4278114398533,54.39480602429,38.2480267808046,14.2437190748609,16.8337264228434,13.5437476344758,16.4717969410815,19.1339287410771,25.5173073787273,26.8112012781038,18.7930618654816,21.2495368240843,0.227178579999552,0.226714680320357,0.579728977403356,0,0,0,0,0,2.38755514223978,0,0,0,0.563373679106722,0,0,0,0,0,0,1.48439043634778,2.58937883647172,10.0940654564081,3.64319186208885,4.26251669636998,3.92046345335299,5.27529241934179,4.9387256996996,5.02666365318702,0.494389935468748,1.87979163995885,0,0.485300549842228,0.441683036920787,0,0,47.7232699128822,50.8955497556696,0.255457055208591,0,0,0,33.7028938660851,79.605104890441,23.4973638451056,78.2209440865244,80.5503690590541,46.752310025901,60.0292673350703,2.13862664085664,0.497627882440372,0,6.52369753248069,2.08192708740326,1.37941262660084,2.88099407688559,2.41127708537144,4.69451844144162,3.84341160854549,5.90320864726292,13.1938719076898,1.5089759505299,1.32374256117473,3.51902248327898,3.94552318369635,3.05851974148158,3.48252166522167,2.05782136407943,1.39323986772945,0,0,0,0.414251545071004,0,0.36012412292203,0.473489471170421,0.196764231747404,0.462801338662135,0.930135779001631,1.3413670069981,1.86824547787471,3.78487654801005,1.14917224855367,6.08016071593918,6.87139940899062,3.07370161407471,6.44190810049784,66.2413337977001,16.5676425930648,0,1.05780226665418,1.06644125267617,2.32236671860439,1.54640953586512,2.21851877085677,1.33426826306922,0.570676878337677,1.42358718463353,1.15289268306808,1.50801125280162,0.198956472041151,1.55971269695296,0.898819408654221,1.08069024937347,0.597423819763102,0.758671603812327,1.48523066392647,0,0.407302655690628,0.775809948670503,0.49095073923223,0.505892296994058,0.147610147979602,0,0,0,0.500535317148282,0.393117990226406,0.674586337154561,0,0.241177159752417,0,0.287696137450811,0.162135226775035,0,0,0,0,0,0,0,1.10851914099963,0.189491411770485,1.95557971730431,0.678980343100753,1.40814148973101,1.67506257441816,1.6663054862021,1.17080188714679,0.472905432318573,0.664394068946325,0.797273843287435,0.655453258862952,0.863424909329478,1.01254341007058,0,0,1.47529281905711,1.93155722413313,15.2523060488402,16.0580010631318,0,0,1.89304931649754,1.17131623288992,1.93881057959519,0,0.668396022247182,0.283076530788832,0.404810701674894,1.16902343164525,0.790575555893047,93.8258243951677,3.83238230062325,2.49291845134157,3.09485222771795,5.77395430403874,2.65490276679926,2.91336763385978,1.209294227859,1.50884063804718,1.47650946440386,1.22974059177571,2.58428293168221,0.727067458955011,2.85197902707777,2.84433082142234,3.16255825724996,1.03135543248187,9.53230896110606,1.26042765821917,1.94038025674132,1.28602221018955,4.78818630834139,3.74574516964348,6.08831376227848,9.74287837166718,0.469343416127421,0.21183207086382,0.661585194164886,5.60613260001032,2.42196640043858,1.26657142349127,0.716234064018819,1.47726809770555,0.582961673259701,16.3174265769249,0,0.412773735926445,0.370389054739423,0,0,0,0,0,0,0,0.790839983952838,2.03319467126849,2.37611749807963,2.09088296014469,2.18362563746178,2.42755823492677,2.81021749466142,2.87931536182433,1.03691978633434,0.621339313086926,5.07323644815771,1.04661582230785,2.48187735685646,3.50012139019286,3.09983576346555,3.37912250981556,3.87278887530988,6.11960608766566,14.156011497471,9.42178071221424,6.91272015018877,0.316011120628178,0.810900861160657,0.513554785824136,0.129920822977795,0.179026695667481,0.39736270956253,0.120195449519969,0.147689527174577,0.100966449948148,0.15241361331,0.201652370273681,0.0974578807397524,0,0.233753804363138,0.680191150845634,0.665957860122194,0,0,3.47741269257943,4.87974436173073,3.84618410961257,0.857473516316263,1.50471631210609,90.9250466613477,104.033503450622,85.3614315024701,67.3664474787255,62.3425092991284,61.9422995859554,60.0770025206307,73.8526773287722,73.4090702554411,70.9331627099993,0.726511433089237,1.99512436700516,3.58540572083682,5.34834777550247,4.40187641518763,3.49302666055027,3.11145418922261,5.15087643097235,3.85103051510178,3.79045817645696,6.33698249725599,4.52703219326583,4.40115085108447,4.8018864303652,5.11175673704958,6.66811167796303,6.02598494913249,4.05109362973781,3.29668720642645,5.00476328456951,3.42869252385415,3.01708870470874,3.33810665926249,3.48831399917588,4.04670335785922,4.82303264982556,4.39027134894654,3.41990624869196,3.80251518768413,2.2445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| |||
|short_description=p4@Dlgap4 | |||
}} |
Revision as of 22:36, 13 September 2013
Short description: | p4@Dlgap4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Dlgap4_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000109567, ENSMUST00000139136, ENSMUST00000169464, NM_146128, uc008nnr.1_5end |
EntrezGene: | Dlgap4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.22e-13 | 23 |
neuroblast (sensu Vertebrata) | 4.22e-13 | 23 |
neural cell | 8.76e-10 | 43 |
ectodermal cell | 3.33e-09 | 44 |
neurectodermal cell | 3.33e-09 | 44 |
neuron | 7.15e-08 | 33 |
neuronal stem cell | 7.15e-08 | 33 |
neuroblast | 7.15e-08 | 33 |
electrically signaling cell | 7.15e-08 | 33 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.