FFCP PHASE1:Mm9::chr10:126703380..126703498,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=69654|HGNC=|MCL_coexpression_id=1875|UniProt=Q99KJ8|association_with_transcript=0bp_to_ENSMUST00000026479_5end|description=CAGE_peak_1_at_Dctn2_5end|id=chr10:126703380..126703498,+|ontology_enrichment_celltype=CL:0002321!6.25e-23!70;CL:0000220!6.25e-23!70;CL:0000055!1.20e-22!50;CL:0000221!1.99e-19!44;CL:0000133!1.99e-19!44;CL:0002319!2.59e-19!43;CL:0000393!3.69e-17!39;CL:0000211!3.69e-17!39;CL:0000540!4.84e-14!33;CL:0000047!4.84e-14!33;CL:0000031!4.84e-14!33;CL:0000404!4.84e-14!33;CL:0000117!2.13e-11!23;CL:0000337!2.13e-11!23;CL:0002371!8.72e-11!118;CL:0000548!3.66e-10!115;CL:0000004!3.66e-10!115;CL:0000255!3.66e-10!115;CL:0000144!1.25e-09!121;CL:0000012!1.25e-09!121|ontology_enrichment_celltype_v019_2=CL:0002321,6.25e-23,70;CL:0000221,1.99e-19,44;CL:0000133,1.99e-19,44;CL:0002319,2.59e-19,43;CL:0000393,3.69e-17,39;CL:0000211,3.69e-17,39;CL:0000540,4.84e-14,33;CL:0000047,4.84e-14,33;CL:0000031,4.84e-14,33;CL:0000404,4.84e-14,33;CL:0000117,2.13e-11,23;CL:0000337,2.13e-11,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!9.82e-27!75;UBERON:0001016!9.82e-27!75;UBERON:0001017!2.85e-26!73;UBERON:0005743!2.85e-26!73;UBERON:0004121!2.65e-20!102;UBERON:0000924!2.65e-20!102;UBERON:0006601!2.65e-20!102;UBERON:0001049!2.67e-17!52;UBERON:0005068!2.67e-17!52;UBERON:0006241!2.67e-17!52;UBERON:0007135!2.67e-17!52;UBERON:0002616!5.52e-16!49;UBERON:0000955!1.47e-15!50;UBERON:0006238!1.47e-15!50;UBERON:0002346!4.48e-15!71;UBERON:0003075!4.48e-15!71;UBERON:0007284!4.48e-15!71;UBERON:0002020!2.38e-14!34;UBERON:0000033!4.87e-13!63;UBERON:0003080!3.60e-12!40;UBERON:0002780!4.95e-12!39;UBERON:0001890!4.95e-12!39;UBERON:0006240!4.95e-12!39;UBERON:0002791!8.06e-12!29;UBERON:0003528!8.06e-12!29;UBERON:0001893!8.06e-12!29;UBERON:0004111!8.96e-11!122;UBERON:0000025!1.93e-10!114;UBERON:0003056!6.45e-10!49;UBERON:0000956!1.87e-09!21;UBERON:0001869!1.87e-09!21;UBERON:0000203!1.87e-09!21;UBERON:0002619!2.02e-08!17|ontology_enrichment_uberon_v019_2=UBERON:0001016,9.82e-27,75;UBERON:0001017,2.85e-26,73;UBERON:0004121,7.60e-21,95;UBERON:0000924,7.60e-21,95;UBERON:0006601,7.60e-21,95;UBERON:0000073,1.26e-18,54;UBERON:0001049,2.67e-17,52;UBERON:0005068,2.67e-17,52;UBERON:0006241,2.67e-17,52;UBERON:0007135,2.67e-17,52;UBERON:0002346,7.29e-16,64;UBERON:0003075,7.29e-16,64;UBERON:0007284,7.29e-16,64;UBERON:0010314,3.94e-15,92;UBERON:0002616,2.18e-14,46;UBERON:0002020,2.38e-14,34;UBERON:0000955,5.59e-14,47;UBERON:0006238,5.59e-14,47;UBERON:0010371,1.91e-13,73;UBERON:0003080,3.60e-12,40;UBERON:0002780,4.95e-12,39;UBERON:0001890,4.95e-12,39;UBERON:0006240,4.95e-12,39;UBERON:0003528,8.06e-12,29;UBERON:0002791,8.06e-12,29;UBERON:0001893,8.06e-12,29;UBERON:0004111,8.96e-11,122;UBERON:0000025,1.93e-10,114;UBERON:0003056,6.45e-10,49;UBERON:0000956,1.87e-09,21;UBERON:0001869,1.87e-09,21;UBERON:0000203,1.87e-09,21;UBERON:0002619,2.02e-08,17|phase1_expression=116.748509539395,138.892212240466,146.509755083431,136.713823510687,128.229306866265,96.026943533601,95.7811826441655,36.5419005339661,18.3025338797167,15.9163877898956,30.6480163123654,32.8661295060786,35.4385510957596,29.1109940055261,72.6179280758145,78.3579284798626,111.230338622375,51.8935262014301,49.0869672308545,38.6194583136207,183.778550016462,76.156159571079,62.6879493933445,132.793710918528,137.416159359235,132.64758371057,147.320602686404,130.360095774963,152.018735565099,145.42138487148,139.911952223497,76.8387114886154,87.339199837009,15.8481681015439,62.103098246524,57.6834219393968,62.6799923725473,137.278374881706,128.920331846427,114.651699930262,131.763853318947,141.390415386398,124.290650375975,206.218987843996,210.86401693659,170.882026262526,197.945010120054,225.001961384621,234.624843160416,245.176102732671,176.522877669582,208.441218329209,48.8247383628013,73.2615763431458,65.5382908327805,159.758109778323,192.837005078783,184.094936943047,189.570523825443,224.821166190614,199.656892104446,226.34814742218,172.523190445561,183.579542325405,172.062747086654,182.593389541148,216.01167968377,236.294257772756,130.856290733299,155.256829081444,153.74754674786,242.232034774425,204.966006003097,141.109400695627,128.145394751382,164.540162803194,204.815538658863,193.829379213315,184.635052974005,201.390361364006,211.061993790759,187.007900029877,192.915452309954,153.071429928617,156.1598092279,176.777151284201,159.171539133397,174.842680184132,116.315432959771,136.860095353389,103.481622466499,114.436375638524,113.555212729194,129.528765993076,115.660202305685,123.207393951767,99.7155382935438,205.027678061403,296.935403261079,282.318320033762,122.533775205712,288.734574182215,259.901344500779,156.434674693733,120.585509843246,129.2135313923,128.403209033755,100.481814152773,52.0465146130815,83.7213664325612,86.7426633830679,106.258451930937,99.8565103118733,97.0653805158889,110.768562121834,110.963600144103,118.653584512499,81.1202392320704,49.538190909193,85.5746636221795,79.0612636088209,64.4884086669845,93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| ||
|EntrezGene=69654 | |||
|HGNC= | |||
|MCL_coexpression_id=1875 | |||
|UniProt=Q99KJ8 | |||
|association_with_transcript=0bp_to_ENSMUST00000026479_5end | |||
|description=CAGE_peak_1_at_Dctn2_5end | |||
|id=chr10:126703380..126703498,+ | |||
|ontology_enrichment_celltype=CL:0002321!6.25e-23!70;CL:0000220!6.25e-23!70;CL:0000055!1.20e-22!50;CL:0000221!1.99e-19!44;CL:0000133!1.99e-19!44;CL:0002319!2.59e-19!43;CL:0000393!3.69e-17!39;CL:0000211!3.69e-17!39;CL:0000540!4.84e-14!33;CL:0000047!4.84e-14!33;CL:0000031!4.84e-14!33;CL:0000404!4.84e-14!33;CL:0000117!2.13e-11!23;CL:0000337!2.13e-11!23;CL:0002371!8.72e-11!118;CL:0000548!3.66e-10!115;CL:0000004!3.66e-10!115;CL:0000255!3.66e-10!115;CL:0000144!1.25e-09!121;CL:0000012!1.25e-09!121 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,6.25e-23,70;CL:0000221,1.99e-19,44;CL:0000133,1.99e-19,44;CL:0002319,2.59e-19,43;CL:0000393,3.69e-17,39;CL:0000211,3.69e-17,39;CL:0000540,4.84e-14,33;CL:0000047,4.84e-14,33;CL:0000031,4.84e-14,33;CL:0000404,4.84e-14,33;CL:0000117,2.13e-11,23;CL:0000337,2.13e-11,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!9.82e-27!75;UBERON:0001016!9.82e-27!75;UBERON:0001017!2.85e-26!73;UBERON:0005743!2.85e-26!73;UBERON:0004121!2.65e-20!102;UBERON:0000924!2.65e-20!102;UBERON:0006601!2.65e-20!102;UBERON:0001049!2.67e-17!52;UBERON:0005068!2.67e-17!52;UBERON:0006241!2.67e-17!52;UBERON:0007135!2.67e-17!52;UBERON:0002616!5.52e-16!49;UBERON:0000955!1.47e-15!50;UBERON:0006238!1.47e-15!50;UBERON:0002346!4.48e-15!71;UBERON:0003075!4.48e-15!71;UBERON:0007284!4.48e-15!71;UBERON:0002020!2.38e-14!34;UBERON:0000033!4.87e-13!63;UBERON:0003080!3.60e-12!40;UBERON:0002780!4.95e-12!39;UBERON:0001890!4.95e-12!39;UBERON:0006240!4.95e-12!39;UBERON:0002791!8.06e-12!29;UBERON:0003528!8.06e-12!29;UBERON:0001893!8.06e-12!29;UBERON:0004111!8.96e-11!122;UBERON:0000025!1.93e-10!114;UBERON:0003056!6.45e-10!49;UBERON:0000956!1.87e-09!21;UBERON:0001869!1.87e-09!21;UBERON:0000203!1.87e-09!21;UBERON:0002619!2.02e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,9.82e-27,75;UBERON:0001017,2.85e-26,73;UBERON:0004121,7.60e-21,95;UBERON:0000924,7.60e-21,95;UBERON:0006601,7.60e-21,95;UBERON:0000073,1.26e-18,54;UBERON:0001049,2.67e-17,52;UBERON:0005068,2.67e-17,52;UBERON:0006241,2.67e-17,52;UBERON:0007135,2.67e-17,52;UBERON:0002346,7.29e-16,64;UBERON:0003075,7.29e-16,64;UBERON:0007284,7.29e-16,64;UBERON:0010314,3.94e-15,92;UBERON:0002616,2.18e-14,46;UBERON:0002020,2.38e-14,34;UBERON:0000955,5.59e-14,47;UBERON:0006238,5.59e-14,47;UBERON:0010371,1.91e-13,73;UBERON:0003080,3.60e-12,40;UBERON:0002780,4.95e-12,39;UBERON:0001890,4.95e-12,39;UBERON:0006240,4.95e-12,39;UBERON:0003528,8.06e-12,29;UBERON:0002791,8.06e-12,29;UBERON:0001893,8.06e-12,29;UBERON:0004111,8.96e-11,122;UBERON:0000025,1.93e-10,114;UBERON:0003056,6.45e-10,49;UBERON:0000956,1.87e-09,21;UBERON:0001869,1.87e-09,21;UBERON:0000203,1.87e-09,21;UBERON:0002619,2.02e-08,17 | |||
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| |||
|short_description=p1@Dctn2 | |||
}} |
Revision as of 16:01, 12 September 2013
Short description: | p1@Dctn2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Dctn2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1875 |
Association with transcript: | 0bp_to_ENSMUST00000026479_5end |
EntrezGene: | Dctn2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 6.25e-23 | 70 |
ectodermal cell | 1.99e-19 | 44 |
neurectodermal cell | 1.99e-19 | 44 |
neural cell | 2.59e-19 | 43 |
electrically responsive cell | 3.69e-17 | 39 |
electrically active cell | 3.69e-17 | 39 |
neuron | 4.84e-14 | 33 |
neuronal stem cell | 4.84e-14 | 33 |
neuroblast | 4.84e-14 | 33 |
electrically signaling cell | 4.84e-14 | 33 |
CNS neuron (sensu Vertebrata) | 2.13e-11 | 23 |
neuroblast (sensu Vertebrata) | 2.13e-11 | 23 |
Ontology term | p-value | n |
---|---|---|
nervous system | 9.82e-27 | 75 |
central nervous system | 2.85e-26 | 73 |
ectoderm-derived structure | 7.60e-21 | 95 |
ectoderm | 7.60e-21 | 95 |
presumptive ectoderm | 7.60e-21 | 95 |
regional part of nervous system | 1.26e-18 | 54 |
neural tube | 2.67e-17 | 52 |
neural rod | 2.67e-17 | 52 |
future spinal cord | 2.67e-17 | 52 |
neural keel | 2.67e-17 | 52 |
neurectoderm | 7.29e-16 | 64 |
neural plate | 7.29e-16 | 64 |
presumptive neural plate | 7.29e-16 | 64 |
structure with developmental contribution from neural crest | 3.94e-15 | 92 |
regional part of brain | 2.18e-14 | 46 |
gray matter | 2.38e-14 | 34 |
brain | 5.59e-14 | 47 |
future brain | 5.59e-14 | 47 |
ecto-epithelium | 1.91e-13 | 73 |
anterior neural tube | 3.60e-12 | 40 |
regional part of forebrain | 4.95e-12 | 39 |
forebrain | 4.95e-12 | 39 |
future forebrain | 4.95e-12 | 39 |
brain grey matter | 8.06e-12 | 29 |
regional part of telencephalon | 8.06e-12 | 29 |
telencephalon | 8.06e-12 | 29 |
anatomical conduit | 8.96e-11 | 122 |
tube | 1.93e-10 | 114 |
pre-chordal neural plate | 6.45e-10 | 49 |
cerebral cortex | 1.87e-09 | 21 |
cerebral hemisphere | 1.87e-09 | 21 |
pallium | 1.87e-09 | 21 |
regional part of cerebral cortex | 2.02e-08 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.