FFCP PHASE1:Mm9::chr13:111071199..111071245,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=67295|HGNC=|MCL_coexpression_id=87|UniProt=|association_with_transcript=0bp_to_uc007rvp.2_5end|description=CAGE_peak_2_at_Rab3c_5end|id=chr13:111071199..111071245,-|ontology_enrichment_celltype=CL:0000117!2.73e-14!23;CL:0000337!2.73e-14!23;CL:0000540!1.25e-09!33;CL:0000047!1.25e-09!33;CL:0000031!1.25e-09!33;CL:0000404!1.25e-09!33;CL:0000393!3.28e-07!39;CL:0000211!3.28e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,9.71e-16,23;CL:0000337,9.71e-16,23;CL:0000540,1.71e-08,33;CL:0000047,1.71e-08,33;CL:0000031,1.71e-08,33;CL:0000404,1.71e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!2.89e-16!71;UBERON:0003075!2.89e-16!71;UBERON:0007284!2.89e-16!71;UBERON:0001049!1.50e-14!52;UBERON:0005068!1.50e-14!52;UBERON:0006241!1.50e-14!52;UBERON:0007135!1.50e-14!52;UBERON:0001017!8.73e-14!73;UBERON:0005743!8.73e-14!73;UBERON:0000073!1.14e-13!75;UBERON:0001016!1.14e-13!75;UBERON:0000955!8.26e-13!50;UBERON:0006238!8.26e-13!50;UBERON:0004121!1.11e-12!102;UBERON:0000924!1.11e-12!102;UBERON:0006601!1.11e-12!102;UBERON:0002616!2.35e-12!49;UBERON:0000033!6.28e-11!63;UBERON:0003080!2.08e-10!40;UBERON:0002020!3.11e-10!34;UBERON:0002780!8.03e-10!39;UBERON:0001890!8.03e-10!39;UBERON:0006240!8.03e-10!39;UBERON:0003056!1.14e-09!49;UBERON:0002791!4.01e-07!29;UBERON:0003528!4.01e-07!29;UBERON:0001893!4.01e-07!29;UBERON:0002420!7.73e-07!8;UBERON:0007245!7.73e-07!8;UBERON:0010009!7.73e-07!8;UBERON:0010011!7.73e-07!8;UBERON:0000454!7.73e-07!8|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.31e-17,54;UBERON:0001049,8.78e-16,52;UBERON:0005068,8.78e-16,52;UBERON:0006241,8.78e-16,52;UBERON:0007135,8.78e-16,52;UBERON:0001017,4.74e-14,73;UBERON:0001016,2.99e-13,75;UBERON:0002346,5.96e-13,64;UBERON:0003075,5.96e-13,64;UBERON:0007284,5.96e-13,64;UBERON:0000955,1.20e-11,47;UBERON:0006238,1.20e-11,47;UBERON:0002616,4.02e-11,46;UBERON:0002020,1.01e-10,34;UBERON:0003080,2.56e-10,40;UBERON:0010371,1.17e-09,73;UBERON:0002780,1.25e-09,39;UBERON:0001890,1.25e-09,39;UBERON:0006240,1.25e-09,39;UBERON:0004121,3.02e-09,95;UBERON:0000924,3.02e-09,95;UBERON:0006601,3.02e-09,95;UBERON:0010314,3.76e-09,92;UBERON:0003056,3.90e-09,49;UBERON:0002420,2.48e-08,8;UBERON:0007245,2.48e-08,8;UBERON:0010009,2.48e-08,8;UBERON:0010011,2.48e-08,8;UBERON:0000454,2.48e-08,8;UBERON:0002240,3.90e-07,6;UBERON:0005174,3.90e-07,6;UBERON:0001137,3.90e-07,6;UBERON:0003528,4.98e-07,29;UBERON:0002791,4.98e-07,29;UBERON:0001893,4.98e-07,29|phase1_expression=0.160148847104794,0,0,0,0.500895729946347,2.01455126294268,2.33612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04103896362567,0,0,1.75991665072747,0.91763712426868,0,0.86152399231815,0.215471232685889,0.570070258369122,1.00812051903972,0.221730510655305,0,0,0,0,0.664938581433969,0.204169356262369,0,0,0,0,0,0,0,0.202753862439029,0.367093504323363,0,0,0,0,0,0,0,0,0,0,0,0,15.1737345644698,22.7466121086974,13.3104594736298,0,0,0,0,0,0,0,1.03689612308478,0.945041568321835,0.841299845405528,6.28432165688368,8.39300455616131,2.32732518508413,2.39613677545591,3.67687514644008,5.50579404996943,5.49055553766307,5.06901559745603,11.6059933202571,10.9785172322892,7.8137005583514,5.58365998002762,4.50210088025344,7.02871939773326,14.4368006882097,18.3659468230843,13.6071595452469,0.151452386666368,0.302286240427142,0,0,0,0,0,0,0.280888840263504,0,0,0,0.281686839553361,0,0,0,0,0,0,0.45673551887624,0,4.60170631100957,1.56136794089522,3.34912026143355,1.84492397804847,4.06951129492081,4.8211369925639,3.14166478324189,0.247194967734374,0.289198713839823,0,0,0,0,1.86391761218122,1.17112318804619,1.25668024088073,1.02182822083437,0,0,0,6.44099749440738,4.11750542536764,9.5497307605777,2.25971616249959,2.30143911597297,7.48036960414416,5.51620294430376,0,0,0.505445516867349,0,0,0,0.720248519221397,2.41127708537144,1.02054748726992,1.40925092313335,1.12442069471675,0.776110112217047,0,0,0,0,0,0,0.205782136407943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.15434922846191,0.92614151141356,0.660837565967596,0.528901133327089,0,0.232236671860439,0.515469845288373,1.00841762311671,0.667134131534611,3.04361001780095,0.949058123089023,1.97638745668813,0.502670417600539,0.795825888164603,0.779856348476481,0.898819408654221,1.29682829924817,1.1948476395262,0,0,0,0,0,0.0701358198903186,0,0.147610147979602,0,0.123397163921801,0,0,0,0,0,0,0.25462585178142,0,0,0,0,0,0,0,0,0,3.8798169934987,0.568474235311454,0.651859905768103,1.35796068620151,1.64283173801951,3.01511263395268,1.90434912708811,3.70753930929818,0.315270288212382,0.44292937929755,0.318909537314974,5.57135270033509,2.76295970985433,7.95569822198314,0,0,0,0,5.45872005958493,5.86058432961016,1.47541450839008,0,0.315508219416257,0,0.646270193198397,0.238968797952552,0.222798674082394,0,0,0,0.395287777946524,3.21321316421807,0,0.178065603667255,0,0.164970122972535,0,0,0,0.754420319023592,0.295301892880773,0,0.258428293168221,1.45413491791002,0,0.316036757935816,0,0,9.19186935535228,0,0.258717367565509,0.428674070063185,4.78818630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| ||
|EntrezGene=67295 | |||
|HGNC= | |||
|MCL_coexpression_id=87 | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc007rvp.2_5end | |||
|description=CAGE_peak_2_at_Rab3c_5end | |||
|id=chr13:111071199..111071245,- | |||
|ontology_enrichment_celltype=CL:0000117!2.73e-14!23;CL:0000337!2.73e-14!23;CL:0000540!1.25e-09!33;CL:0000047!1.25e-09!33;CL:0000031!1.25e-09!33;CL:0000404!1.25e-09!33;CL:0000393!3.28e-07!39;CL:0000211!3.28e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,9.71e-16,23;CL:0000337,9.71e-16,23;CL:0000540,1.71e-08,33;CL:0000047,1.71e-08,33;CL:0000031,1.71e-08,33;CL:0000404,1.71e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!2.89e-16!71;UBERON:0003075!2.89e-16!71;UBERON:0007284!2.89e-16!71;UBERON:0001049!1.50e-14!52;UBERON:0005068!1.50e-14!52;UBERON:0006241!1.50e-14!52;UBERON:0007135!1.50e-14!52;UBERON:0001017!8.73e-14!73;UBERON:0005743!8.73e-14!73;UBERON:0000073!1.14e-13!75;UBERON:0001016!1.14e-13!75;UBERON:0000955!8.26e-13!50;UBERON:0006238!8.26e-13!50;UBERON:0004121!1.11e-12!102;UBERON:0000924!1.11e-12!102;UBERON:0006601!1.11e-12!102;UBERON:0002616!2.35e-12!49;UBERON:0000033!6.28e-11!63;UBERON:0003080!2.08e-10!40;UBERON:0002020!3.11e-10!34;UBERON:0002780!8.03e-10!39;UBERON:0001890!8.03e-10!39;UBERON:0006240!8.03e-10!39;UBERON:0003056!1.14e-09!49;UBERON:0002791!4.01e-07!29;UBERON:0003528!4.01e-07!29;UBERON:0001893!4.01e-07!29;UBERON:0002420!7.73e-07!8;UBERON:0007245!7.73e-07!8;UBERON:0010009!7.73e-07!8;UBERON:0010011!7.73e-07!8;UBERON:0000454!7.73e-07!8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.31e-17,54;UBERON:0001049,8.78e-16,52;UBERON:0005068,8.78e-16,52;UBERON:0006241,8.78e-16,52;UBERON:0007135,8.78e-16,52;UBERON:0001017,4.74e-14,73;UBERON:0001016,2.99e-13,75;UBERON:0002346,5.96e-13,64;UBERON:0003075,5.96e-13,64;UBERON:0007284,5.96e-13,64;UBERON:0000955,1.20e-11,47;UBERON:0006238,1.20e-11,47;UBERON:0002616,4.02e-11,46;UBERON:0002020,1.01e-10,34;UBERON:0003080,2.56e-10,40;UBERON:0010371,1.17e-09,73;UBERON:0002780,1.25e-09,39;UBERON:0001890,1.25e-09,39;UBERON:0006240,1.25e-09,39;UBERON:0004121,3.02e-09,95;UBERON:0000924,3.02e-09,95;UBERON:0006601,3.02e-09,95;UBERON:0010314,3.76e-09,92;UBERON:0003056,3.90e-09,49;UBERON:0002420,2.48e-08,8;UBERON:0007245,2.48e-08,8;UBERON:0010009,2.48e-08,8;UBERON:0010011,2.48e-08,8;UBERON:0000454,2.48e-08,8;UBERON:0002240,3.90e-07,6;UBERON:0005174,3.90e-07,6;UBERON:0001137,3.90e-07,6;UBERON:0003528,4.98e-07,29;UBERON:0002791,4.98e-07,29;UBERON:0001893,4.98e-07,29 | |||
|phase1_expression=0.160148847104794,0,0,0,0.500895729946347,2.01455126294268,2.33612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04103896362567,0,0,1.75991665072747,0.91763712426868,0,0.86152399231815,0.215471232685889,0.570070258369122,1.00812051903972,0.221730510655305,0,0,0,0,0.664938581433969,0.204169356262369,0,0,0,0,0,0,0,0.202753862439029,0.367093504323363,0,0,0,0,0,0,0,0,0,0,0,0,15.1737345644698,22.7466121086974,13.3104594736298,0,0,0,0,0,0,0,1.03689612308478,0.945041568321835,0.841299845405528,6.28432165688368,8.39300455616131,2.32732518508413,2.39613677545591,3.67687514644008,5.50579404996943,5.49055553766307,5.06901559745603,11.6059933202571,10.9785172322892,7.8137005583514,5.58365998002762,4.50210088025344,7.02871939773326,14.4368006882097,18.3659468230843,13.6071595452469,0.151452386666368,0.302286240427142,0,0,0,0,0,0,0.280888840263504,0,0,0,0.281686839553361,0,0,0,0,0,0,0.45673551887624,0,4.60170631100957,1.56136794089522,3.34912026143355,1.84492397804847,4.06951129492081,4.8211369925639,3.14166478324189,0.247194967734374,0.289198713839823,0,0,0,0,1.86391761218122,1.17112318804619,1.25668024088073,1.02182822083437,0,0,0,6.44099749440738,4.11750542536764,9.5497307605777,2.25971616249959,2.30143911597297,7.48036960414416,5.51620294430376,0,0,0.505445516867349,0,0,0,0.720248519221397,2.41127708537144,1.02054748726992,1.40925092313335,1.12442069471675,0.776110112217047,0,0,0,0,0,0,0.205782136407943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.15434922846191,0.92614151141356,0.660837565967596,0.528901133327089,0,0.232236671860439,0.515469845288373,1.00841762311671,0.667134131534611,3.04361001780095,0.949058123089023,1.97638745668813,0.502670417600539,0.795825888164603,0.779856348476481,0.898819408654221,1.29682829924817,1.1948476395262,0,0,0,0,0,0.0701358198903186,0,0.147610147979602,0,0.123397163921801,0,0,0,0,0,0,0.25462585178142,0,0,0,0,0,0,0,0,0,3.8798169934987,0.568474235311454,0.651859905768103,1.35796068620151,1.64283173801951,3.01511263395268,1.90434912708811,3.70753930929818,0.315270288212382,0.44292937929755,0.318909537314974,5.57135270033509,2.76295970985433,7.95569822198314,0,0,0,0,5.45872005958493,5.86058432961016,1.47541450839008,0,0.315508219416257,0,0.646270193198397,0.238968797952552,0.222798674082394,0,0,0,0.395287777946524,3.21321316421807,0,0.178065603667255,0,0.164970122972535,0,0,0,0.754420319023592,0.295301892880773,0,0.258428293168221,1.45413491791002,0,0.316036757935816,0,0,9.19186935535228,0,0.258717367565509,0.428674070063185,4.78818630834139,4.28085162244969,3.45552943264454,1.8267896946876,0,0,0.220528398054962,0,0,0.0603129249281559,0,0,1.1659233465194,6.48988557036784,0,0,0,0,0.136694227721025,0,0,0,0,0.954670618015114,0.158167996790568,0.406638934253697,0.432021363287205,0.836353184057875,0.87345025498471,0.809186078308924,1.32245529160537,1.83229159388821,0.518459893167171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.772758376128762,0,0,0,0,0,2.30162618253588,1.71868654031819,2.23409137046794,1.37016503954128,1.5107877947794,0,0.45032120322422,3.17199686288943,1.03552062350364,0.207574695168353,3.59122386060928,2.73173769206615,2.67417388775123,5.65955539095552,2.94149613520023,2.44471400581777,1.85431551515005,3.85103051510178,2.52697211763797,3.29523089857312,4.71565853465191,3.183811253976,2.68905640100451,2.98664438569189,1.42888107384922,3.24476112645595,2.12200142510076,2.47251540481984,3.09117732282234,4.11443102862498,3.19456451086807,3.81497903915713,4.50573891560218,3.29382831453657,3.04612588410035,2.56099162021882,2.63069711437843,3.25929873230068,4.48913817326191,1.66089025373844,2.9551344712669,2.04615521584845,3.09873682371932,3.08650577569826,4.99621155875892,2.57324769289949,1.93383948643468,1.91288332068843,0.882365676478062,1.15933917810211 | |||
|short_description=p2@Rab3c | |||
}} |
Revision as of 23:51, 12 September 2013
Short description: | p2@Rab3c |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Rab3c_5end |
Coexpression cluster: | MCL_coexpression_mm9:87 |
Association with transcript: | 0bp_to_uc007rvp.2_5end |
EntrezGene: | Rab3c |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 9.71e-16 | 23 |
neuroblast (sensu Vertebrata) | 9.71e-16 | 23 |
neuron | 1.71e-08 | 33 |
neuronal stem cell | 1.71e-08 | 33 |
neuroblast | 1.71e-08 | 33 |
electrically signaling cell | 1.71e-08 | 33 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.