FFCP PHASE1:Mm9::chr15:100701101..100701133,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=20273|HGNC=|MCL_coexpression_id=1|UniProt=Q9WTU3|association_with_transcript=0bp_to_NM_001077499,uc007xsg.1,uc007xsh.1_5end|description=CAGE_peak_3_at_Scn8a_5end|id=chr15:100701101..100701133,+|ontology_enrichment_celltype=CL:0000540!1.91e-11!33;CL:0000047!1.91e-11!33;CL:0000031!1.91e-11!33;CL:0000404!1.91e-11!33;CL:0000221!4.45e-09!44;CL:0000133!4.45e-09!44;CL:0002319!1.18e-08!43;CL:0000117!3.23e-08!23;CL:0000337!3.23e-08!23;CL:0000393!5.04e-08!39;CL:0000211!5.04e-08!39|ontology_enrichment_celltype_v019_2=CL:0002610,5.47e-08,3;CL:0002614,4.40e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!3.02e-28!102;UBERON:0000924!3.02e-28!102;UBERON:0006601!3.02e-28!102;UBERON:0002346!1.36e-27!71;UBERON:0003075!1.36e-27!71;UBERON:0007284!1.36e-27!71;UBERON:0000073!2.66e-27!75;UBERON:0001016!2.66e-27!75;UBERON:0000033!3.21e-27!63;UBERON:0001017!2.14e-26!73;UBERON:0005743!2.14e-26!73;UBERON:0000955!2.62e-23!50;UBERON:0006238!2.62e-23!50;UBERON:0002616!1.41e-22!49;UBERON:0001049!5.35e-22!52;UBERON:0005068!5.35e-22!52;UBERON:0006241!5.35e-22!52;UBERON:0007135!5.35e-22!52;UBERON:0003056!2.96e-21!49;UBERON:0003080!3.79e-17!40;UBERON:0002780!1.91e-16!39;UBERON:0001890!1.91e-16!39;UBERON:0006240!1.91e-16!39;UBERON:0007811!1.25e-15!86;UBERON:0002020!1.83e-14!34;UBERON:0002791!1.69e-13!29;UBERON:0003528!1.69e-13!29;UBERON:0001893!1.69e-13!29;UBERON:0000153!2.33e-12!94;UBERON:0000956!4.04e-09!21;UBERON:0001869!4.04e-09!21;UBERON:0000203!4.04e-09!21;UBERON:0002021!4.46e-09!10;UBERON:0000411!4.46e-09!10;UBERON:0001950!4.46e-09!10;UBERON:0002619!1.60e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.00e-34,54;UBERON:0001016,1.15e-33,75;UBERON:0001017,6.98e-33,73;UBERON:0001049,1.00e-30,52;UBERON:0005068,1.00e-30,52;UBERON:0006241,1.00e-30,52;UBERON:0007135,1.00e-30,52;UBERON:0000955,9.19e-30,47;UBERON:0006238,9.19e-30,47;UBERON:0002616,3.36e-28,46;UBERON:0004121,6.57e-28,95;UBERON:0000924,6.57e-28,95;UBERON:0006601,6.57e-28,95;UBERON:0002346,4.03e-27,64;UBERON:0003075,4.03e-27,64;UBERON:0007284,4.03e-27,64;UBERON:0010371,1.90e-24,73;UBERON:0003080,6.69e-23,40;UBERON:0002780,2.13e-21,39;UBERON:0001890,2.13e-21,39;UBERON:0006240,2.13e-21,39;UBERON:0003056,4.80e-21,49;UBERON:0002021,5.34e-21,10;UBERON:0000411,5.34e-21,10;UBERON:0001950,5.34e-21,10;UBERON:0010314,8.91e-18,92;UBERON:0002020,9.37e-17,34;UBERON:0003528,4.25e-16,29;UBERON:0002791,4.25e-16,29;UBERON:0001893,4.25e-16,29;UBERON:0002619,6.67e-14,17;UBERON:0000956,4.69e-13,21;UBERON:0001869,4.69e-13,21;UBERON:0000203,4.69e-13,21;UBERON:0000025,5.71e-11,114;UBERON:0004111,1.25e-10,122;UBERON:0002950,7.87e-09,4;UBERON:0001891,7.87e-09,4;UBERON:0009616,7.87e-09,4;UBERON:0010286,7.87e-09,4;UBERON:0011216,1.83e-08,194;UBERON:0003076,3.82e-08,12;UBERON:0003057,3.82e-08,12;UBERON:0004684,5.47e-08,3;UBERON:0002275,5.47e-08,3;UBERON:0002038,4.40e-07,3;UBERON:0009663,4.40e-07,3;UBERON:0009661,4.40e-07,3;UBERON:0000125,4.40e-07,3;UBERON:0002308,4.40e-07,3|phase1_expression=1.12104192973356,0,0,0,0,0,0,0,0,0.234064526321993,0,0,0,0,0,0,0,0,0,0,1.9559956734746,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0,0,0,0,0,0,0,0,0,0,0,0.606949382578793,0,0.633831403506179,0,0,0,0,0,0,0,0.518448061542388,0.810035629990144,0.210324961351382,0.285650984403804,1.54607978666129,0.367472397644862,0.479227355091182,0,8.8092704799511,14.300981865541,11.5204899942183,0.527545150920775,0.548925861614458,0.52091337055676,10.6089539620525,2.8138130501584,5.95913166329559,0.589257170947335,1.42371680799103,0,0.302904773332736,1.058001841495,0,0,0.679971333707751,0,0,0,0.140444420131752,0,0,0,0.704217098883403,0,0,0,0,0,0,0,0,0.445326417194474,0.520455980298408,0.608930956624282,0.230615497256059,0.301445281105245,0.352766121407114,0,0,0,0,0.161766849947409,0,0,0,7.61230072230023,8.58731497935166,0,0,0,0,6.14141621559773,6.8625090422794,0.879580464790051,10.2556348913443,12.7857728665165,4.57133698031032,5.02947915510049,0,0,0,0.420883711772948,0.520481771850815,0.689706313300419,0.540186389416048,1.05493372485001,0.476255494059295,0.896796041993948,1.21812241927647,0.517406741478031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0,0,0,0,0,0,7.99101804543684,0.617427674275707,0,0,0.639864751605702,0.232236671860439,0.128867461322093,0.201683524623343,0,0,0.474529061544512,0.164698954724011,0.251335208800269,0,0.19496408711912,0,0.216138049874694,0,0.379335801906163,0.571242563048644,0,0.407302655690628,0.387904974335251,0.841629838683823,0.126473074248515,0,0.156998727841375,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37898282354097,0,0.169745085775188,0.234690248288502,0.502518772325447,0,1.56106918286239,0,0.664394068946325,0.318909537314974,0,0,0,0,0.54390568381871,0,0,8.99083303931635,13.1277088983268,0,0,0,0.780877488593277,0.430846795465598,0.716906393857656,1.11399337041197,2.83076530788832,0.404810701674894,0.876767573733936,0.395287777946524,4.81981974632711,0,0,0,0,0,0.2427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| ||
|EntrezGene=20273 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q9WTU3 | |||
|association_with_transcript=0bp_to_NM_001077499,uc007xsg.1,uc007xsh.1_5end | |||
|description=CAGE_peak_3_at_Scn8a_5end | |||
|id=chr15:100701101..100701133,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.91e-11!33;CL:0000047!1.91e-11!33;CL:0000031!1.91e-11!33;CL:0000404!1.91e-11!33;CL:0000221!4.45e-09!44;CL:0000133!4.45e-09!44;CL:0002319!1.18e-08!43;CL:0000117!3.23e-08!23;CL:0000337!3.23e-08!23;CL:0000393!5.04e-08!39;CL:0000211!5.04e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0002610,5.47e-08,3;CL:0002614,4.40e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!3.02e-28!102;UBERON:0000924!3.02e-28!102;UBERON:0006601!3.02e-28!102;UBERON:0002346!1.36e-27!71;UBERON:0003075!1.36e-27!71;UBERON:0007284!1.36e-27!71;UBERON:0000073!2.66e-27!75;UBERON:0001016!2.66e-27!75;UBERON:0000033!3.21e-27!63;UBERON:0001017!2.14e-26!73;UBERON:0005743!2.14e-26!73;UBERON:0000955!2.62e-23!50;UBERON:0006238!2.62e-23!50;UBERON:0002616!1.41e-22!49;UBERON:0001049!5.35e-22!52;UBERON:0005068!5.35e-22!52;UBERON:0006241!5.35e-22!52;UBERON:0007135!5.35e-22!52;UBERON:0003056!2.96e-21!49;UBERON:0003080!3.79e-17!40;UBERON:0002780!1.91e-16!39;UBERON:0001890!1.91e-16!39;UBERON:0006240!1.91e-16!39;UBERON:0007811!1.25e-15!86;UBERON:0002020!1.83e-14!34;UBERON:0002791!1.69e-13!29;UBERON:0003528!1.69e-13!29;UBERON:0001893!1.69e-13!29;UBERON:0000153!2.33e-12!94;UBERON:0000956!4.04e-09!21;UBERON:0001869!4.04e-09!21;UBERON:0000203!4.04e-09!21;UBERON:0002021!4.46e-09!10;UBERON:0000411!4.46e-09!10;UBERON:0001950!4.46e-09!10;UBERON:0002619!1.60e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.00e-34,54;UBERON:0001016,1.15e-33,75;UBERON:0001017,6.98e-33,73;UBERON:0001049,1.00e-30,52;UBERON:0005068,1.00e-30,52;UBERON:0006241,1.00e-30,52;UBERON:0007135,1.00e-30,52;UBERON:0000955,9.19e-30,47;UBERON:0006238,9.19e-30,47;UBERON:0002616,3.36e-28,46;UBERON:0004121,6.57e-28,95;UBERON:0000924,6.57e-28,95;UBERON:0006601,6.57e-28,95;UBERON:0002346,4.03e-27,64;UBERON:0003075,4.03e-27,64;UBERON:0007284,4.03e-27,64;UBERON:0010371,1.90e-24,73;UBERON:0003080,6.69e-23,40;UBERON:0002780,2.13e-21,39;UBERON:0001890,2.13e-21,39;UBERON:0006240,2.13e-21,39;UBERON:0003056,4.80e-21,49;UBERON:0002021,5.34e-21,10;UBERON:0000411,5.34e-21,10;UBERON:0001950,5.34e-21,10;UBERON:0010314,8.91e-18,92;UBERON:0002020,9.37e-17,34;UBERON:0003528,4.25e-16,29;UBERON:0002791,4.25e-16,29;UBERON:0001893,4.25e-16,29;UBERON:0002619,6.67e-14,17;UBERON:0000956,4.69e-13,21;UBERON:0001869,4.69e-13,21;UBERON:0000203,4.69e-13,21;UBERON:0000025,5.71e-11,114;UBERON:0004111,1.25e-10,122;UBERON:0002950,7.87e-09,4;UBERON:0001891,7.87e-09,4;UBERON:0009616,7.87e-09,4;UBERON:0010286,7.87e-09,4;UBERON:0011216,1.83e-08,194;UBERON:0003076,3.82e-08,12;UBERON:0003057,3.82e-08,12;UBERON:0004684,5.47e-08,3;UBERON:0002275,5.47e-08,3;UBERON:0002038,4.40e-07,3;UBERON:0009663,4.40e-07,3;UBERON:0009661,4.40e-07,3;UBERON:0000125,4.40e-07,3;UBERON:0002308,4.40e-07,3 | |||
|phase1_expression=1.12104192973356,0,0,0,0,0,0,0,0,0.234064526321993,0,0,0,0,0,0,0,0,0,0,1.9559956734746,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0,0,0,0,0,0,0,0,0,0,0,0.606949382578793,0,0.633831403506179,0,0,0,0,0,0,0,0.518448061542388,0.810035629990144,0.210324961351382,0.285650984403804,1.54607978666129,0.367472397644862,0.479227355091182,0,8.8092704799511,14.300981865541,11.5204899942183,0.527545150920775,0.548925861614458,0.52091337055676,10.6089539620525,2.8138130501584,5.95913166329559,0.589257170947335,1.42371680799103,0,0.302904773332736,1.058001841495,0,0,0.679971333707751,0,0,0,0.140444420131752,0,0,0,0.704217098883403,0,0,0,0,0,0,0,0,0.445326417194474,0.520455980298408,0.608930956624282,0.230615497256059,0.301445281105245,0.352766121407114,0,0,0,0,0.161766849947409,0,0,0,7.61230072230023,8.58731497935166,0,0,0,0,6.14141621559773,6.8625090422794,0.879580464790051,10.2556348913443,12.7857728665165,4.57133698031032,5.02947915510049,0,0,0,0.420883711772948,0.520481771850815,0.689706313300419,0.540186389416048,1.05493372485001,0.476255494059295,0.896796041993948,1.21812241927647,0.517406741478031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0,0,0,0,0,0,7.99101804543684,0.617427674275707,0,0,0.639864751605702,0.232236671860439,0.128867461322093,0.201683524623343,0,0,0.474529061544512,0.164698954724011,0.251335208800269,0,0.19496408711912,0,0.216138049874694,0,0.379335801906163,0.571242563048644,0,0.407302655690628,0.387904974335251,0.841629838683823,0.126473074248515,0,0.156998727841375,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37898282354097,0,0.169745085775188,0.234690248288502,0.502518772325447,0,1.56106918286239,0,0.664394068946325,0.318909537314974,0,0,0,0,0.54390568381871,0,0,8.99083303931635,13.1277088983268,0,0,0,0.780877488593277,0.430846795465598,0.716906393857656,1.11399337041197,2.83076530788832,0.404810701674894,0.876767573733936,0.395287777946524,4.81981974632711,0,0,0,0,0,0.242780636154981,0.906970670894253,0,0,0.307435147943927,0.258428293168221,0,0,0,0,0,1.02131881726136,0,0.646793418913773,0,1.24138163549592,0.535106452806212,1.31639216481697,1.2178597964584,0,0.21183207086382,0,0,0,0.180938774784468,0,0,0,10.5692422145991,0,0.206386867963223,0.555583582109135,0,0,0,0,0,0,0,0,0.203319467126849,0.108005340821801,0,0,0.134864346384821,0,0,0.129614973291793,0,0,0.149516546043979,0.165458490457098,0,0,0,0,0,0.314578033277133,0.483168241652012,0.288030006257865,0,0,0.102710957164827,0.129920822977795,0,0,0,0,0,0.0762068066549998,0,0,0,0,0,0,0.0897138566094757,0.335769232728157,0,0,0,0,0,7.34177395402186,6.44455331110048,8.02053718815155,9.10821866421544,9.59115527678899,9.06472676867641,9.45031500324528,8.55610286126019,7.70342095273148,8.28416498802912,0.62272408550506,0.798049746802062,0,0.243106717068294,0,0.183843508450014,0.666740183404846,0.412070114477788,0,0,0,0.377252682772152,0.37456602987953,0.256100609619477,0.229741875822453,0.476293691283074,0.579421629724277,0,0,0.147198920134397,0,0.177475806159338,0,0,0.376437521661322,0.338458431566706,0.182927972872773,0.263069711437843,0.543216455383447,1.12228454331548,0.593175090620871,0.29551344712669,0,0.464810523557898,0.192906610981141,0.499621155875892,0,0,0.191288332068843,0.441182838239031,0.231867835620421 | |||
|short_description=p3@Scn8a | |||
}} |
Revision as of 03:20, 13 September 2013
Short description: | p3@Scn8a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Scn8a_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_NM_001077499, uc007xsg.1, uc007xsh.1_5end |
EntrezGene: | Scn8a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
raphe nuclei neuron | 5.47e-08 | 3 |
neuron of the substantia nigra | 4.40e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.