Coexpression cluster:C612: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 8: | Line 8: | ||
|tf_chipseq_enrich=ATF3#467;5:8.02256233071741:0.000249231279312087:0.00268760615178886!CCNT2#905;9:4.07327244233312:5.6650649163175e-05:0.000949380158529018!E2F1#1869;10:3.50527801062809:5.45556518161784e-05:0.000924207253857235!E2F6#1876;11:3.94205093204795:3.91931737261351e-06:0.000127556742623366!EGR1#1958;7:2.49408954740507:0.0117605194461907:0.04285613714029!ELF1#1997;9:2.73734868780485:0.00133657072811265:0.00887018556734812!HEY1#23462;13:3.75153168288387:1.40950819416918e-07:7.98739155132038e-06!HMGN3#9324;8:4.67345584191462:7.53694136401289e-05:0.0011666675842836!JUND#3727;6:2.99771311794473:0.00911646392082055:0.0344931484051218!NFKB1#4790;9:3.52804077269604:0.000181629889293606:0.0022016299916359!NRF1#4899;6:5.23297690616182:0.000507577770393346:0.00444834394244447!POLR2A#5430;14:2.14745317655807:2.25331953374171e-05:0.000492537544546777!POU2F2#5452;5:3.25218716347947:0.0136235155601946:0.0480684574861879!SIX5#147912;4:4.88191867298829:0.00730145528674041:0.0302002648986884!SMC3#9126;4:4.29855224140938:0.0113787067695173:0.0417034235086193!TAF1#6872;12:2.86546824492454:2.44753931259235e-05:0.000530659244898966!TBP#6908;13:3.44200135230379:4.20225918943144e-07:2.02062498842095e-05!USF2#7392;6:5.56808459360125:0.000362490831700241:0.00362071346326908!YY1#7528;12:4.20957492844616:3.04483641911638e-07:1.5325285338607e-05!ZBTB7A#51341;7:3.67595465393795:0.00122472924108481:0.00823734526079707!ZNF143#7702;6:5.78608995095481:0.000293990833817525:0.00306979690992486 | |tf_chipseq_enrich=ATF3#467;5:8.02256233071741:0.000249231279312087:0.00268760615178886!CCNT2#905;9:4.07327244233312:5.6650649163175e-05:0.000949380158529018!E2F1#1869;10:3.50527801062809:5.45556518161784e-05:0.000924207253857235!E2F6#1876;11:3.94205093204795:3.91931737261351e-06:0.000127556742623366!EGR1#1958;7:2.49408954740507:0.0117605194461907:0.04285613714029!ELF1#1997;9:2.73734868780485:0.00133657072811265:0.00887018556734812!HEY1#23462;13:3.75153168288387:1.40950819416918e-07:7.98739155132038e-06!HMGN3#9324;8:4.67345584191462:7.53694136401289e-05:0.0011666675842836!JUND#3727;6:2.99771311794473:0.00911646392082055:0.0344931484051218!NFKB1#4790;9:3.52804077269604:0.000181629889293606:0.0022016299916359!NRF1#4899;6:5.23297690616182:0.000507577770393346:0.00444834394244447!POLR2A#5430;14:2.14745317655807:2.25331953374171e-05:0.000492537544546777!POU2F2#5452;5:3.25218716347947:0.0136235155601946:0.0480684574861879!SIX5#147912;4:4.88191867298829:0.00730145528674041:0.0302002648986884!SMC3#9126;4:4.29855224140938:0.0113787067695173:0.0417034235086193!TAF1#6872;12:2.86546824492454:2.44753931259235e-05:0.000530659244898966!TBP#6908;13:3.44200135230379:4.20225918943144e-07:2.02062498842095e-05!USF2#7392;6:5.56808459360125:0.000362490831700241:0.00362071346326908!YY1#7528;12:4.20957492844616:3.04483641911638e-07:1.5325285338607e-05!ZBTB7A#51341;7:3.67595465393795:0.00122472924108481:0.00823734526079707!ZNF143#7702;6:5.78608995095481:0.000293990833817525:0.00306979690992486 | ||
|tfbs_overrepresentation=0.171014,0.245837,1.76505e-08,0.204003,0.278936,0.0228066,0.185471,6.13088e-05,0.143797,0.114434,0.0342278,0.11872,0.623293,0.466536,0.528188,0.257844,0.158999,0.382679,0.22384,0.413539,0.0758515,0.143302,0.329112,0.372055,0.179754,0.106234,0.665945,0.358417,0.515296,0.367091,0.657101,0.43169,0.081409,0.297184,0.274765,0.337579,1.76406e-16,0.185315,0.450319,0.275414,0.377159,0.109784,0.0346361,0.612886,0.451967,0.158247,0.165457,0.607299,0.42337,0.452794,0.541973,0.228906,0.287869,0.077023,0.276844,0.167073,0.41169,0.00576857,0.316561,0.405875,0.130122,0.17521,0.415208,0.308302,0.230387,0.214763,0.330551,0.250835,0.342965,0.573865,0.00786555,0.278935,0.00994664,0.44749,0.0344132,0.0774137,0.377204,0.188196,0.0139556,0.033398,0.374417,0.337742,0.183453,0.0201917,0.0240712,0.000512212,0.266812,0.298892,1.06046e-11,0.260965,0.341906,0.21128,0.373622,0.202669,0.0660378,0.434623,2.68531e-12,0.54086,0.0766528,0.189931,0.241404,0.445046,0.510327,0.161604,0.684638,0.177181,0.276444,0.00370364,0.165165,0.0169471,0.0155775,0.149059,0.175473,0.079898,0.392266,0.148053,0.0914379,0.238279,0.502685,0.33544,0.573045,0.311185,0.505649,0.341993,0.395877,0.596897,0.358306,0.0671879,0.337202,0.491567,0.249229,0.0519122,0.240392,0.101982,0.466008,0.413672,0.268724,0.0296176,0.145117,0.0183245,0.101939,0.471158,0.0231851,0.188144,5.58686e-07,0.284832,0.384661,0.336753,0.169196,0.451723,0.0218797,0.515111,0.0679139,0.118145,0.184284,0.442101,0.30414,0.70178,0.219421,0.14794,0.700577,0.080451,0.43942,0.52588,0.0181528,0.4324,0.173586,0.470486,0.174879,0.825494,0.603204,0.0055159,0.0100736,0.228738,0.322111,0.3563,0.506214,0.607985,0.600398,0.155767,0.553908,0.456482,0.121624,0.113139,0.300501,0.445919,0.243425,0.174162,0.332151,0.589183,0.410735,0.620089,0.457814,0.123237,0.427561,0.201494,0.316315,0.251865,0.278833,0.418481,0.35373,0.252281,0.135969,0.253044,0.495719,0.408665,0.439357,0.0430132,0.659801,0.0143036,0.196766,0.402098,0.452657,0.108611,0.000466565,0.00027756,0.567016,0.391386,0.261877,0.397828,0.160799,0.0697516,0.0462526,0.0502457,0.300977,0.468338,0.0338521,0.342632,0.252485,0.250415,6.44937e-05,0.0282347,0.180825,0.310238,0.375358,0.0773196,0.202097,0.0565463,0.0523058,0.027898,0.242253,2.98621e-08,0.38331,0.332906,0.438355,0.000721563,0.327519,0.424474,1.79968e-05,0.44056,0.554422,0.615414,0.616686,0.382127,0.382323,0.195469,0.411033,0.0223567,0.285786,1.43706e-11,0.257923,0.0133751,0.0522003,0.472542,0.151179,0.326006,0.326335,0.362831,0.443659,0.00624566,0.0196475,0.262968,0.159851,2.61286e-12,0.344701,0.165576,0.0284331,0.00958954,3.40851e-06,0.000162957,0.000397207,0.0434279,3.76839e-08,4.90851e-15,0.851448,0.0467782,0.41332,0.520628,0.887355,0.00858592,0.822889,0.84646,0.0104731,0.287079,0.287939,0.290833,0.435858,0.479086,0.227355,0.000773807,0.0552487,0.612534,0.619989,0.87792,0.607758,0.258394,0.419439,0.28957,0.683205,0.000374481,0.647313,0.554775,1.14082e-08,0.275845,0.13361,0.884901,0.0143877,0.00460999,0.395952,0.779644,0.0281391,0.953469,0.0348661,0.692872,0.41189,3.0528e-06,0.789283,0.526319,8.0874e-05,0.80002,0.148262,5.06471e-06,0.716075,0.801499,3.70005e-06,0.286376,0.00720137,0.375454,0.00551784,0.60922,4.33324e-08,3.89432e-15,2.20362e-08,0.443172,0.133572,0.616507,0.318984,0.0299206,0.771209,0.312339,0.633152,1.2171e-05,0.135266,0.736585,0.0711872,0.082294,0.564695,0.276667,0.298274,0.614597,2.41807e-06,1.88307e-07,0.3846,0.000264477,0.0814439,0.504532,0.721704,0.0233405,0.319689,0.0329463,0.000648072,0.193779,0.304117,0.702894,1.05047e-13,0.000112291,8.427e-06,0.484471,0.583759,0.0125101,0.00591873,0.00297268,3.08496e-09,0.781367,3.39676e-09,0.266689,0.701259,0.852375,0.274367,0.547603,1.54344e-05,0.469925,0.59355,0.46821,0.852124,7.28707e-19,0.567553,0.518095,0.520011,0.195096,0.0727399,0.000604115,0.943579,0.742419,0.53845,0.19953,0.497479,0.753486,0.491172,0.383905,0.503203,0.222513,0.790469,0.136714,0.818843,0.817893,0.428165,0.112779,0.0617515,0.790518,0.415459,0.344615,0.697922,0.0997201,0.460935,0.352965,0.334364,1.06481e-15,0.659648,1.73751e-05,0.00175766,2.485e-05,0.429955,0.855426,4.78164e-07,0.786104,0.510019,0.774943,0.000241549,0.555818,0.363239,0.175383,0.349398,0.624903,0.353188,0.249171,0.0633043,2.50412e-05,0.320877,0.296938,0.865939,0.578513,0.435385,0.519746,1.9925e-06,0.83028,0.286449,0.234611,0.631401,0.315434,0.241712,0.516813,0.116166,0.654482,0.00205864,1.11805e-06,1.06824e-06,0.425331,0.0233503,0.187579,0.0287815,0.46796,0.491346,0.40995,0.000891091,0.000274702,0.00820766,0.0808804,0.0018195,0.452724,0.0305025,0.199183,0.579918,0.433297,0.402727,0.355886,0.345057,0.556345,0.410629,0.188867,0.018027,0.459708,0.137054,2.46659e-06,0.633803,0.0512517,0.212783,0.332239,0.0419746,0.608808,0.423354,0.685193,0.0128677,0.0199648,0.484031,7.16228e-05,0.205811,0.646957,0.000222809,0.471588,0.228315,0.613918,0.214823,0.0692253,0.0803744,0.0514536,0.327977,0.41042,0.0186842,0.0222644,0.22402,0.508314,0.304435,0.132792,0.482226,0.191476,0.221967,0.298532,0.539734,0.32162,0.380182,0.557129,0.459518,0.358174,0.235074,0.00111634,2.36632e-08,0.152123,0.0663328,0.271758,0.304763,0.323854,0.322854,0.307749,0.00160153,0.632829,0.231656,0.315342,0.236502,0.180519,0.151296,0.168921,0.0028995,0.581578,0.649139,0.208593,0.0133252,4.85088e-07,0.145253,0.323703,0.321718,0.171324,0.249488,6.98582e-05,0.456489,0.416036,0.103807,0.0553449,0.126655,8.7239e-08,0.165836,0.168817,0.34758,0.232128,0.516141,0.744761,0.680814,0.626053,0.480937,0.0882489,0.359991,0.468107,0.308916,0.586693,0.328776,0.242733,8.26563e-07,0.525647,0.509234,0.574376,0.158318,0.352594,1.38051e-05,0.793887,0.202394,0.372,0.00737823,0.48593,0.313489,0.0175691,0.473863,0.481952,1.18652e-06,7.32273e-06,0.219957,0.386498,0.213016,0.257581,0.306778,0.368009,0.516161,0.149154,0.302107,0.0674378,1.41625e-08,6.44711e-05,0.681197,0.215022,0.00321013,0.263376,0.232845,7.75697e-16,0.241724,0.203517,0.000701217,0.254032,0.593244,0.0276526,0.291991,0.331119,0.476881,0.15556,0.465476,0.226883,5.34433e-13,6.3726e-21,0.0954189,0.318751,0.414214,0.277745,0.101707,0.210578,0.375129,0.658666,0.307018,0.19593,0.10413,0.288264,0.0076565,0.54045,0.16414,0.14338,0.193367,0.227897,0.432278,0.365739,0.0601182,0.403936,0.326264,0.24021,0.353867,0.308426,0.000237359,0.0434076,0.0197277,3.91193e-07,0.393482,0.000666006,0.587836,0.0478865,0.535687,0.260698,0.018445,0.0405854,5.81736e-11,0.187793,0.294013,0.362292,0.251684,0.516765,0.533214,0.380058,0.0454479,0.0581986,0.0192629,0.497808,0.122355,0.391362,0.470466,0.446456,0.000841555,0.0423964,0.428988,0.427501,0.61865,0.00230508,0.371883,0.418805,0.38609,0.506747,0.387692,0.0526076,0.399946,0.428759,0.113799,0.575907,0.358215,0.00968926,0.0112414,0.623034,0.00772259,0.247453,0.188666,0.0325052,0.007533,0.247428,0.00245714,0.065676,0.00649383,0.126246,7.70209e-09,3.04396e-09,0.157609,0.00404776,0.48095,0.187268,0.487947,6.77314e-05,0.00663815,0.304002,0.441102,0.707263,0.0014842,0.506903,0.634728,0.0484782,0.303552,0.641807,0.213072,0.160085,0.037564,0.893425,0.223245,0.21155,0.491544,3.6664e-07,0.0848671,0.818737,0.00617347,0.93494,0.265806,1.1192e-09,3.28332e-12,0.699462,0.257948,6.46431e-08,0.00895513,0.790513,0.114646,0.000147083,1.851e-09,0.796518,0.567003,0.553764,0.794926,0.369034,0.00409752,0.569882,0.0788725,0.751904,0.0075108,0.727883,2.1692e-13,0.20354,2.70044e-11,2.52087e-07,0.199331,7.07537e-13,0.0575446,0.105157,1.15318e-14,0.372639,1.94852e-12,0.189456,0.00684854,3.40537e-15,3.64881e-05,0.286788,0.280501,0.658362,0.496701,0.749305,0.00521969,0.86528,0.0786534,0.547086,0.508845,0.0040291,0.376091,0.10264,0.335456,0.566109,0.125588,0.449954,0.206507,0.53807,0.259141,0.607087,0.458064,8.84229e-09,0.165283,0.913685,0.658597,0.837157,0.0668829,0.576106,0.000655132,0.665887,0.135926,4.33273e-05,0.000367602,0.327116,0.460016,0.042849,0.33016,5.71573e-10,0.221471,0.656826,0.770712,0.50228,0.00035534,0.21007,0.274797,0.333901,0.529828,0.589568,0.592968,0.0128911,0.00716206,0.454836,0.0129291,0.165699,0.478555,0.00268122,0.35199,0.715288,0.654138,0.774723,0.889111,0.762222,0.867077,0.777529,0.000414032,0.50796,0.724085,0.637226,0.509574,0.815347,0.0167306,0.897747,0.00224484,0.740375,0.658769,0.0268197,0.114594,0.686786,4.50523e-05,0.640746,0.629207,0.555901,2.91222e-06,0.81979,0.781093,0.78892,0.00221329,0.350231,0.425188,0.774553,0.169381,0.777159,0.896226,0.0352149,0.614452,0.855887,0.642475,8.77404e-09,0.197479,0.293111,0.864828,0.810569,0.00336257,0.658026,0.595703,0.315097,0.779701,0.657795,0.147894,0.625216,0.166003,0.622192,0.294118,0.175283,0.56305,0.628185,0.56424,0.321438,0.296691,0.0102754,0.373564,0.571642,0.742343,0.649921,0.747657,0.662256,0.937092,0.0666561,0.633647,0.324651,0.6919,0.310057,0.0986772,0.682601,0.644155,0.251363,0.458936,0.0874665,0.0107917,0.366902,0.461022,0.236851,0.699036,0.450416,0.341247,0.481022,0.00524314,0.734869,0.690717,0.277689,0.0977798,0.764633,0.428828,0.520437,0.703657,0.56202,0.702807,0.0568255,0.167392,0.27322,0.22134,0.195528,0.428906,0.282882,0.597655,0.544167,0.449866,0.384185,0.414781,0.249171,0.678642,0.553004,0.323377,0.0198288,0.46149,0.409147,0.512216,0.605271,0.556477,0.750457,0.177778,0.680896,0.460642,0.613545,0.61579,0.0487612,0.752335,0.413736,0.654735,0.674587,0.662315,0.51031,0.632436,0.737348,0.11382,0.332632,0.732422,0.587939,0.0885425,0.504741,0.64103,0.722973,0.547991,0.480913,0.16314,0.69157,0.58586,0.596617,0.378621,0.28403,0.517352,0.785434,0.0294736,0.329999,0.65125,0.409482,0.226719,0.227361,0.534493,0.315496,0.176359,0.227215,0.536931,0.0555513,0.669752,0.621034,0.352401,0.624999,0.326761,0.382401,0.266095,0.454858,0.265087,0.402864,0.274042,0.309364,0.474347,0.416949,0.189841,0.276311,0.354746,0.160298,0.491672,0.655972,0.805312,0.793321,0.86318,0.509942,0.0152682,0.401147,0.647234,0.700164,0.492217,0.00282537,0.598612,0.789177,0.17455,0.482811,0.197442,0.659682,0.64545,0.79359,0.716075,0.840422,0.436971,0.682681,0.693478,0.435373,0.636566,0.628086,0.456865,0.204805,0.738739,0.568069,0.694262,0.367768,0.843134,0.697002,0.662776,0.375214,0.342479,0.263575,0.219847,0.553916,0.771635,0.291242,0.770651,0.391636,0.691105,0.594658,0.190679,0.678211,0.743325,0.659112,0.876701 | |tfbs_overrepresentation=0.171014,0.245837,1.76505e-08,0.204003,0.278936,0.0228066,0.185471,6.13088e-05,0.143797,0.114434,0.0342278,0.11872,0.623293,0.466536,0.528188,0.257844,0.158999,0.382679,0.22384,0.413539,0.0758515,0.143302,0.329112,0.372055,0.179754,0.106234,0.665945,0.358417,0.515296,0.367091,0.657101,0.43169,0.081409,0.297184,0.274765,0.337579,1.76406e-16,0.185315,0.450319,0.275414,0.377159,0.109784,0.0346361,0.612886,0.451967,0.158247,0.165457,0.607299,0.42337,0.452794,0.541973,0.228906,0.287869,0.077023,0.276844,0.167073,0.41169,0.00576857,0.316561,0.405875,0.130122,0.17521,0.415208,0.308302,0.230387,0.214763,0.330551,0.250835,0.342965,0.573865,0.00786555,0.278935,0.00994664,0.44749,0.0344132,0.0774137,0.377204,0.188196,0.0139556,0.033398,0.374417,0.337742,0.183453,0.0201917,0.0240712,0.000512212,0.266812,0.298892,1.06046e-11,0.260965,0.341906,0.21128,0.373622,0.202669,0.0660378,0.434623,2.68531e-12,0.54086,0.0766528,0.189931,0.241404,0.445046,0.510327,0.161604,0.684638,0.177181,0.276444,0.00370364,0.165165,0.0169471,0.0155775,0.149059,0.175473,0.079898,0.392266,0.148053,0.0914379,0.238279,0.502685,0.33544,0.573045,0.311185,0.505649,0.341993,0.395877,0.596897,0.358306,0.0671879,0.337202,0.491567,0.249229,0.0519122,0.240392,0.101982,0.466008,0.413672,0.268724,0.0296176,0.145117,0.0183245,0.101939,0.471158,0.0231851,0.188144,5.58686e-07,0.284832,0.384661,0.336753,0.169196,0.451723,0.0218797,0.515111,0.0679139,0.118145,0.184284,0.442101,0.30414,0.70178,0.219421,0.14794,0.700577,0.080451,0.43942,0.52588,0.0181528,0.4324,0.173586,0.470486,0.174879,0.825494,0.603204,0.0055159,0.0100736,0.228738,0.322111,0.3563,0.506214,0.607985,0.600398,0.155767,0.553908,0.456482,0.121624,0.113139,0.300501,0.445919,0.243425,0.174162,0.332151,0.589183,0.410735,0.620089,0.457814,0.123237,0.427561,0.201494,0.316315,0.251865,0.278833,0.418481,0.35373,0.252281,0.135969,0.253044,0.495719,0.408665,0.439357,0.0430132,0.659801,0.0143036,0.196766,0.402098,0.452657,0.108611,0.000466565,0.00027756,0.567016,0.391386,0.261877,0.397828,0.160799,0.0697516,0.0462526,0.0502457,0.300977,0.468338,0.0338521,0.342632,0.252485,0.250415,6.44937e-05,0.0282347,0.180825,0.310238,0.375358,0.0773196,0.202097,0.0565463,0.0523058,0.027898,0.242253,2.98621e-08,0.38331,0.332906,0.438355,0.000721563,0.327519,0.424474,1.79968e-05,0.44056,0.554422,0.615414,0.616686,0.382127,0.382323,0.195469,0.411033,0.0223567,0.285786,1.43706e-11,0.257923,0.0133751,0.0522003,0.472542,0.151179,0.326006,0.326335,0.362831,0.443659,0.00624566,0.0196475,0.262968,0.159851,2.61286e-12,0.344701,0.165576,0.0284331,0.00958954,3.40851e-06,0.000162957,0.000397207,0.0434279,3.76839e-08,4.90851e-15,0.851448,0.0467782,0.41332,0.520628,0.887355,0.00858592,0.822889,0.84646,0.0104731,0.287079,0.287939,0.290833,0.435858,0.479086,0.227355,0.000773807,0.0552487,0.612534,0.619989,0.87792,0.607758,0.258394,0.419439,0.28957,0.683205,0.000374481,0.647313,0.554775,1.14082e-08,0.275845,0.13361,0.884901,0.0143877,0.00460999,0.395952,0.779644,0.0281391,0.953469,0.0348661,0.692872,0.41189,3.0528e-06,0.789283,0.526319,8.0874e-05,0.80002,0.148262,5.06471e-06,0.716075,0.801499,3.70005e-06,0.286376,0.00720137,0.375454,0.00551784,0.60922,4.33324e-08,3.89432e-15,2.20362e-08,0.443172,0.133572,0.616507,0.318984,0.0299206,0.771209,0.312339,0.633152,1.2171e-05,0.135266,0.736585,0.0711872,0.082294,0.564695,0.276667,0.298274,0.614597,2.41807e-06,1.88307e-07,0.3846,0.000264477,0.0814439,0.504532,0.721704,0.0233405,0.319689,0.0329463,0.000648072,0.193779,0.304117,0.702894,1.05047e-13,0.000112291,8.427e-06,0.484471,0.583759,0.0125101,0.00591873,0.00297268,3.08496e-09,0.781367,3.39676e-09,0.266689,0.701259,0.852375,0.274367,0.547603,1.54344e-05,0.469925,0.59355,0.46821,0.852124,7.28707e-19,0.567553,0.518095,0.520011,0.195096,0.0727399,0.000604115,0.943579,0.742419,0.53845,0.19953,0.497479,0.753486,0.491172,0.383905,0.503203,0.222513,0.790469,0.136714,0.818843,0.817893,0.428165,0.112779,0.0617515,0.790518,0.415459,0.344615,0.697922,0.0997201,0.460935,0.352965,0.334364,1.06481e-15,0.659648,1.73751e-05,0.00175766,2.485e-05,0.429955,0.855426,4.78164e-07,0.786104,0.510019,0.774943,0.000241549,0.555818,0.363239,0.175383,0.349398,0.624903,0.353188,0.249171,0.0633043,2.50412e-05,0.320877,0.296938,0.865939,0.578513,0.435385,0.519746,1.9925e-06,0.83028,0.286449,0.234611,0.631401,0.315434,0.241712,0.516813,0.116166,0.654482,0.00205864,1.11805e-06,1.06824e-06,0.425331,0.0233503,0.187579,0.0287815,0.46796,0.491346,0.40995,0.000891091,0.000274702,0.00820766,0.0808804,0.0018195,0.452724,0.0305025,0.199183,0.579918,0.433297,0.402727,0.355886,0.345057,0.556345,0.410629,0.188867,0.018027,0.459708,0.137054,2.46659e-06,0.633803,0.0512517,0.212783,0.332239,0.0419746,0.608808,0.423354,0.685193,0.0128677,0.0199648,0.484031,7.16228e-05,0.205811,0.646957,0.000222809,0.471588,0.228315,0.613918,0.214823,0.0692253,0.0803744,0.0514536,0.327977,0.41042,0.0186842,0.0222644,0.22402,0.508314,0.304435,0.132792,0.482226,0.191476,0.221967,0.298532,0.539734,0.32162,0.380182,0.557129,0.459518,0.358174,0.235074,0.00111634,2.36632e-08,0.152123,0.0663328,0.271758,0.304763,0.323854,0.322854,0.307749,0.00160153,0.632829,0.231656,0.315342,0.236502,0.180519,0.151296,0.168921,0.0028995,0.581578,0.649139,0.208593,0.0133252,4.85088e-07,0.145253,0.323703,0.321718,0.171324,0.249488,6.98582e-05,0.456489,0.416036,0.103807,0.0553449,0.126655,8.7239e-08,0.165836,0.168817,0.34758,0.232128,0.516141,0.744761,0.680814,0.626053,0.480937,0.0882489,0.359991,0.468107,0.308916,0.586693,0.328776,0.242733,8.26563e-07,0.525647,0.509234,0.574376,0.158318,0.352594,1.38051e-05,0.793887,0.202394,0.372,0.00737823,0.48593,0.313489,0.0175691,0.473863,0.481952,1.18652e-06,7.32273e-06,0.219957,0.386498,0.213016,0.257581,0.306778,0.368009,0.516161,0.149154,0.302107,0.0674378,1.41625e-08,6.44711e-05,0.681197,0.215022,0.00321013,0.263376,0.232845,7.75697e-16,0.241724,0.203517,0.000701217,0.254032,0.593244,0.0276526,0.291991,0.331119,0.476881,0.15556,0.465476,0.226883,5.34433e-13,6.3726e-21,0.0954189,0.318751,0.414214,0.277745,0.101707,0.210578,0.375129,0.658666,0.307018,0.19593,0.10413,0.288264,0.0076565,0.54045,0.16414,0.14338,0.193367,0.227897,0.432278,0.365739,0.0601182,0.403936,0.326264,0.24021,0.353867,0.308426,0.000237359,0.0434076,0.0197277,3.91193e-07,0.393482,0.000666006,0.587836,0.0478865,0.535687,0.260698,0.018445,0.0405854,5.81736e-11,0.187793,0.294013,0.362292,0.251684,0.516765,0.533214,0.380058,0.0454479,0.0581986,0.0192629,0.497808,0.122355,0.391362,0.470466,0.446456,0.000841555,0.0423964,0.428988,0.427501,0.61865,0.00230508,0.371883,0.418805,0.38609,0.506747,0.387692,0.0526076,0.399946,0.428759,0.113799,0.575907,0.358215,0.00968926,0.0112414,0.623034,0.00772259,0.247453,0.188666,0.0325052,0.007533,0.247428,0.00245714,0.065676,0.00649383,0.126246,7.70209e-09,3.04396e-09,0.157609,0.00404776,0.48095,0.187268,0.487947,6.77314e-05,0.00663815,0.304002,0.441102,0.707263,0.0014842,0.506903,0.634728,0.0484782,0.303552,0.641807,0.213072,0.160085,0.037564,0.893425,0.223245,0.21155,0.491544,3.6664e-07,0.0848671,0.818737,0.00617347,0.93494,0.265806,1.1192e-09,3.28332e-12,0.699462,0.257948,6.46431e-08,0.00895513,0.790513,0.114646,0.000147083,1.851e-09,0.796518,0.567003,0.553764,0.794926,0.369034,0.00409752,0.569882,0.0788725,0.751904,0.0075108,0.727883,2.1692e-13,0.20354,2.70044e-11,2.52087e-07,0.199331,7.07537e-13,0.0575446,0.105157,1.15318e-14,0.372639,1.94852e-12,0.189456,0.00684854,3.40537e-15,3.64881e-05,0.286788,0.280501,0.658362,0.496701,0.749305,0.00521969,0.86528,0.0786534,0.547086,0.508845,0.0040291,0.376091,0.10264,0.335456,0.566109,0.125588,0.449954,0.206507,0.53807,0.259141,0.607087,0.458064,8.84229e-09,0.165283,0.913685,0.658597,0.837157,0.0668829,0.576106,0.000655132,0.665887,0.135926,4.33273e-05,0.000367602,0.327116,0.460016,0.042849,0.33016,5.71573e-10,0.221471,0.656826,0.770712,0.50228,0.00035534,0.21007,0.274797,0.333901,0.529828,0.589568,0.592968,0.0128911,0.00716206,0.454836,0.0129291,0.165699,0.478555,0.00268122,0.35199,0.715288,0.654138,0.774723,0.889111,0.762222,0.867077,0.777529,0.000414032,0.50796,0.724085,0.637226,0.509574,0.815347,0.0167306,0.897747,0.00224484,0.740375,0.658769,0.0268197,0.114594,0.686786,4.50523e-05,0.640746,0.629207,0.555901,2.91222e-06,0.81979,0.781093,0.78892,0.00221329,0.350231,0.425188,0.774553,0.169381,0.777159,0.896226,0.0352149,0.614452,0.855887,0.642475,8.77404e-09,0.197479,0.293111,0.864828,0.810569,0.00336257,0.658026,0.595703,0.315097,0.779701,0.657795,0.147894,0.625216,0.166003,0.622192,0.294118,0.175283,0.56305,0.628185,0.56424,0.321438,0.296691,0.0102754,0.373564,0.571642,0.742343,0.649921,0.747657,0.662256,0.937092,0.0666561,0.633647,0.324651,0.6919,0.310057,0.0986772,0.682601,0.644155,0.251363,0.458936,0.0874665,0.0107917,0.366902,0.461022,0.236851,0.699036,0.450416,0.341247,0.481022,0.00524314,0.734869,0.690717,0.277689,0.0977798,0.764633,0.428828,0.520437,0.703657,0.56202,0.702807,0.0568255,0.167392,0.27322,0.22134,0.195528,0.428906,0.282882,0.597655,0.544167,0.449866,0.384185,0.414781,0.249171,0.678642,0.553004,0.323377,0.0198288,0.46149,0.409147,0.512216,0.605271,0.556477,0.750457,0.177778,0.680896,0.460642,0.613545,0.61579,0.0487612,0.752335,0.413736,0.654735,0.674587,0.662315,0.51031,0.632436,0.737348,0.11382,0.332632,0.732422,0.587939,0.0885425,0.504741,0.64103,0.722973,0.547991,0.480913,0.16314,0.69157,0.58586,0.596617,0.378621,0.28403,0.517352,0.785434,0.0294736,0.329999,0.65125,0.409482,0.226719,0.227361,0.534493,0.315496,0.176359,0.227215,0.536931,0.0555513,0.669752,0.621034,0.352401,0.624999,0.326761,0.382401,0.266095,0.454858,0.265087,0.402864,0.274042,0.309364,0.474347,0.416949,0.189841,0.276311,0.354746,0.160298,0.491672,0.655972,0.805312,0.793321,0.86318,0.509942,0.0152682,0.401147,0.647234,0.700164,0.492217,0.00282537,0.598612,0.789177,0.17455,0.482811,0.197442,0.659682,0.64545,0.79359,0.716075,0.840422,0.436971,0.682681,0.693478,0.435373,0.636566,0.628086,0.456865,0.204805,0.738739,0.568069,0.694262,0.367768,0.843134,0.697002,0.662776,0.375214,0.342479,0.263575,0.219847,0.553916,0.771635,0.291242,0.770651,0.391636,0.691105,0.594658,0.190679,0.678211,0.743325,0.659112,0.876701 | ||
|tfbs_overrepresentation_for_novel_motifs=2.36567,0.844166,0.541316,0.297884,0.153879,0.296522,0.360887,0.0785261,0.0771434,1.90495,1.37072,0.398649,0.446874,0.350994,0.152923,0.169541,1.37708,0.117033,0.0612687,0.0824773,0.184,0.440546,0.789382,0.150321,0.623871,0.418678,0.0456804,0.288329,1.4739,0.152963,0.254115,0.594213,1.61483,0.205943,0.407984,2.01336,1.88982,0.29748,0.113038,2.41888,0.40562,1.25681,0.142503,0.151865,2.63051,0.596593,0.949837,0.262957,0.127784,0.15614,0.431291,0.372023,0.485552,0.666176,0.811691,0.353512,0.15913,0.325599,0.0389839,0.324748,1.52924,0.363871,0.0774141,1.32304,0.988629,0.503101,0.896916,1.25738,0.584559,1.09778,0.230809,0.278952,4.92396,0.80977,3.38061,0.402042,0.16121,0.519091,0.581542,0.213774,0.227702,1.32095,0.37913,0.0800936,0.760489,8.66872,0.973972,2.94,0.454557,1.35556,0.98765,0.734737,0.609873,0.101133,3.58574,0.109261,0.218567,0.649779,2.02341,0.301239,0.113893,0.6046,0.644537,0.563483,1.23371,2.08808,0.548871,0.348037,1.16972,1.39424,0.561401,0.641937,0.531469,0.279418,0.940917,0.12714,1.22572,0.253155,0.500972,0.102878,0.801818,0.452379,0.294241,0.388967,1.04884,0.519787,0.355419,0.614537,0.842806,0.109858,0.735394,0.712269,0.856671,1.00316,1.00021,0.925323,0.249339,0.288795,0.95886,1.80749,1.40745,0.922589,0.356906,0.646464,1.23712,0.853342,0.47912,1.64894,0.238532,0.66991,1.43996,9.00473,0.735758,0.921167,0.363452,1.12781,0.440071,0.443316,0.218554,1.70713,0.921409,0.718143,0.580811,0.577588,0.508869,0.378443,0.635551,0.35974,5.48661 | |||
}} | }} | ||
Revision as of 14:21, 26 November 2012
Full id: C612_Neutrophils_Eosinophils_granulocyte_CD14_CD4_acute_CD19
Phase1 CAGE Peaks
| Hg19::chr10:114206956..114207040,+ | p1@VTI1A |
| Hg19::chr10:30024802..30024871,- | p5@SVIL |
| Hg19::chr12:116715340..116715396,- | p2@MED13L |
| Hg19::chr12:116715402..116715427,- | p3@MED13L |
| Hg19::chr13:28712614..28712703,+ | p2@PAN3 |
| Hg19::chr14:51297837..51297887,- | p1@NIN |
| Hg19::chr17:4046257..4046349,- | p1@ZZEF1 |
| Hg19::chr17:63052873..63052927,- | p2@GNA13 |
| Hg19::chr1:16174280..16174365,+ | p1@SPEN |
| Hg19::chr20:20693269..20693316,- | p1@RALGAPA2 |
| Hg19::chr22:24059505..24059562,- | p1@GUSBP11 |
| Hg19::chr3:57678772..57678838,- | p1@FAM116A |
| Hg19::chr6:79787593..79787644,- | p@chr6:79787593..79787644 - |
| Hg19::chr7:152133059..152133102,- | p1@MLL3 |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
No results for this coexpression
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
No GOStat results
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
| Ontology term | p-value | n |
|---|---|---|
| hematopoietic system | 1.36e-27 | 98 |
| blood island | 1.36e-27 | 98 |
| hemolymphoid system | 6.28e-25 | 108 |
| adult organism | 8.00e-22 | 114 |
| bone marrow | 4.15e-19 | 76 |
| immune system | 6.22e-19 | 93 |
| bone element | 2.54e-18 | 82 |
| skeletal element | 1.31e-13 | 90 |
| skeletal system | 2.84e-11 | 100 |
| blood | 2.19e-07 | 15 |
| haemolymphatic fluid | 2.19e-07 | 15 |
| organism substance | 2.19e-07 | 15 |
| neural tube | 3.22e-07 | 56 |
| neural rod | 3.22e-07 | 56 |
| future spinal cord | 3.22e-07 | 56 |
| neural keel | 3.22e-07 | 56 |
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
{{{tfbs_overrepresentation_jaspar}}} |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)
| TF | #promoters | Enrichment | p-value | q-value |
|---|---|---|---|---|
| ATF3#467 | 5 | 8.02256233071741 | 0.000249231279312087 | 0.00268760615178886 |
| CCNT2#905 | 9 | 4.07327244233312 | 5.6650649163175e-05 | 0.000949380158529018 |
| E2F1#1869 | 10 | 3.50527801062809 | 5.45556518161784e-05 | 0.000924207253857235 |
| E2F6#1876 | 11 | 3.94205093204795 | 3.91931737261351e-06 | 0.000127556742623366 |
| EGR1#1958 | 7 | 2.49408954740507 | 0.0117605194461907 | 0.04285613714029 |
| ELF1#1997 | 9 | 2.73734868780485 | 0.00133657072811265 | 0.00887018556734812 |
| HEY1#23462 | 13 | 3.75153168288387 | 1.40950819416918e-07 | 7.98739155132038e-06 |
| HMGN3#9324 | 8 | 4.67345584191462 | 7.53694136401289e-05 | 0.0011666675842836 |
| JUND#3727 | 6 | 2.99771311794473 | 0.00911646392082055 | 0.0344931484051218 |
| NFKB1#4790 | 9 | 3.52804077269604 | 0.000181629889293606 | 0.0022016299916359 |
| NRF1#4899 | 6 | 5.23297690616182 | 0.000507577770393346 | 0.00444834394244447 |
| POLR2A#5430 | 14 | 2.14745317655807 | 2.25331953374171e-05 | 0.000492537544546777 |
| POU2F2#5452 | 5 | 3.25218716347947 | 0.0136235155601946 | 0.0480684574861879 |
| SIX5#147912 | 4 | 4.88191867298829 | 0.00730145528674041 | 0.0302002648986884 |
| SMC3#9126 | 4 | 4.29855224140938 | 0.0113787067695173 | 0.0417034235086193 |
| TAF1#6872 | 12 | 2.86546824492454 | 2.44753931259235e-05 | 0.000530659244898966 |
| TBP#6908 | 13 | 3.44200135230379 | 4.20225918943144e-07 | 2.02062498842095e-05 |
| USF2#7392 | 6 | 5.56808459360125 | 0.000362490831700241 | 0.00362071346326908 |
| YY1#7528 | 12 | 4.20957492844616 | 3.04483641911638e-07 | 1.5325285338607e-05 |
| ZBTB7A#51341 | 7 | 3.67595465393795 | 0.00122472924108481 | 0.00823734526079707 |
| ZNF143#7702 | 6 | 5.78608995095481 | 0.000293990833817525 | 0.00306979690992486 |
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data
This analysis result is provided for C0 - C305 clusters.
