FFCP PHASE1:Mm9::chr6:122289651..122289691,-: Difference between revisions
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|id=chr6:122289651..122289691,- | |id=chr6:122289651..122289691,- | ||
|ontology_enrichment_celltype=CL:0000540!1.54e-09!33;CL:0000047!1.54e-09!33;CL:0000031!1.54e-09!33;CL:0000404!1.54e-09!33;CL:0000117!3.44e-09!23;CL:0000337!3.44e-09!23;CL:0000393!2.17e-08!39;CL:0000211!2.17e-08!39;CL:0002319!4.14e-07!43;CL:0000221!5.06e-07!44;CL:0000133!5.06e-07!44 | |ontology_enrichment_celltype=CL:0000540!1.54e-09!33;CL:0000047!1.54e-09!33;CL:0000031!1.54e-09!33;CL:0000404!1.54e-09!33;CL:0000117!3.44e-09!23;CL:0000337!3.44e-09!23;CL:0000393!2.17e-08!39;CL:0000211!2.17e-08!39;CL:0002319!4.14e-07!43;CL:0000221!5.06e-07!44;CL:0000133!5.06e-07!44 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,8.11e-10,33;CL:0000047,8.11e-10,33;CL:0000031,8.11e-10,33;CL:0000404,8.11e-10,33;CL:0000117,1.81e-09,23;CL:0000337,1.81e-09,23;CL:0000393,1.29e-08,39;CL:0000211,1.29e-08,39;CL:0002319,3.58e-07,43;CL:0000221,4.38e-07,44;CL:0000133,4.38e-07,44 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.79e-14!73;UBERON:0005743!2.79e-14!73;UBERON:0000073!2.40e-13!75;UBERON:0001016!2.40e-13!75;UBERON:0000033!3.43e-13!63;UBERON:0003056!7.68e-13!49;UBERON:0004121!1.90e-12!102;UBERON:0000924!1.90e-12!102;UBERON:0006601!1.90e-12!102;UBERON:0000153!4.38e-12!94;UBERON:0002346!1.11e-11!71;UBERON:0003075!1.11e-11!71;UBERON:0007284!1.11e-11!71;UBERON:0001049!1.69e-11!52;UBERON:0005068!1.69e-11!52;UBERON:0006241!1.69e-11!52;UBERON:0007135!1.69e-11!52;UBERON:0000955!9.56e-11!50;UBERON:0006238!9.56e-11!50;UBERON:0002616!2.52e-10!49;UBERON:0003080!3.08e-10!40;UBERON:0002780!4.08e-10!39;UBERON:0001890!4.08e-10!39;UBERON:0006240!4.08e-10!39;UBERON:0007811!1.83e-09!86;UBERON:0002020!1.71e-07!34 | |ontology_enrichment_uberon=UBERON:0001017!2.79e-14!73;UBERON:0005743!2.79e-14!73;UBERON:0000073!2.40e-13!75;UBERON:0001016!2.40e-13!75;UBERON:0000033!3.43e-13!63;UBERON:0003056!7.68e-13!49;UBERON:0004121!1.90e-12!102;UBERON:0000924!1.90e-12!102;UBERON:0006601!1.90e-12!102;UBERON:0000153!4.38e-12!94;UBERON:0002346!1.11e-11!71;UBERON:0003075!1.11e-11!71;UBERON:0007284!1.11e-11!71;UBERON:0001049!1.69e-11!52;UBERON:0005068!1.69e-11!52;UBERON:0006241!1.69e-11!52;UBERON:0007135!1.69e-11!52;UBERON:0000955!9.56e-11!50;UBERON:0006238!9.56e-11!50;UBERON:0002616!2.52e-10!49;UBERON:0003080!3.08e-10!40;UBERON:0002780!4.08e-10!39;UBERON:0001890!4.08e-10!39;UBERON:0006240!4.08e-10!39;UBERON:0007811!1.83e-09!86;UBERON:0002020!1.71e-07!34 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.43e-14,73;UBERON:0002346,1.39e-13,64;UBERON:0003075,1.39e-13,64;UBERON:0007284,1.39e-13,64;UBERON:0001016,2.53e-13,75;UBERON:0004121,5.04e-13,95;UBERON:0000924,5.04e-13,95;UBERON:0006601,5.04e-13,95;UBERON:0003056,6.54e-13,49;UBERON:0000073,2.74e-12,54;UBERON:0001049,9.75e-12,52;UBERON:0005068,9.75e-12,52;UBERON:0006241,9.75e-12,52;UBERON:0007135,9.75e-12,52;UBERON:0010371,1.87e-11,73;UBERON:0000955,9.97e-11,47;UBERON:0006238,9.97e-11,47;UBERON:0010314,1.45e-10,92;UBERON:0002616,2.71e-10,46;UBERON:0003080,3.16e-10,40;UBERON:0002780,4.24e-10,39;UBERON:0001890,4.24e-10,39;UBERON:0006240,4.24e-10,39;UBERON:0002020,2.03e-07,34 | |||
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| ||
|short_description=p2@Phc1 | |short_description=p2@Phc1 | ||
}} | }} |
Revision as of 12:28, 14 November 2012
Short description: | p2@Phc1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Phc1_5end |
Coexpression cluster: | MCL_coexpression_mm9:425 |
Association with transcript: | 0bp_to_ENSMUST00000159252, ENSMUST00000161054, ENSMUST00000161739, ENSMUST00000169419, uc009dpa.1, uc009dpc.1, uc009dpd.1_5end |
EntrezGene: | Phc1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 8.11e-10 | 33 |
neuronal stem cell | 8.11e-10 | 33 |
neuroblast | 8.11e-10 | 33 |
electrically signaling cell | 8.11e-10 | 33 |
CNS neuron (sensu Vertebrata) | 1.81e-09 | 23 |
neuroblast (sensu Vertebrata) | 1.81e-09 | 23 |
electrically responsive cell | 1.29e-08 | 39 |
electrically active cell | 1.29e-08 | 39 |
neural cell | 3.58e-07 | 43 |
ectodermal cell | 4.38e-07 | 44 |
neurectodermal cell | 4.38e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.43e-14 | 73 |
neurectoderm | 1.39e-13 | 64 |
neural plate | 1.39e-13 | 64 |
presumptive neural plate | 1.39e-13 | 64 |
nervous system | 2.53e-13 | 75 |
ectoderm-derived structure | 5.04e-13 | 95 |
ectoderm | 5.04e-13 | 95 |
presumptive ectoderm | 5.04e-13 | 95 |
pre-chordal neural plate | 6.54e-13 | 49 |
regional part of nervous system | 2.74e-12 | 54 |
neural tube | 9.75e-12 | 52 |
neural rod | 9.75e-12 | 52 |
future spinal cord | 9.75e-12 | 52 |
neural keel | 9.75e-12 | 52 |
ecto-epithelium | 1.87e-11 | 73 |
brain | 9.97e-11 | 47 |
future brain | 9.97e-11 | 47 |
structure with developmental contribution from neural crest | 1.45e-10 | 92 |
regional part of brain | 2.71e-10 | 46 |
anterior neural tube | 3.16e-10 | 40 |
regional part of forebrain | 4.24e-10 | 39 |
forebrain | 4.24e-10 | 39 |
future forebrain | 4.24e-10 | 39 |
gray matter | 2.03e-07 | 34 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.