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MCL coexpression mm9:1683: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000055!2.39e-20!49;CL:0000221!3.07e-18!44;CL:0000133!3.07e-18!44;CL:0002319!3.17e-18!43;CL:0000393!1.43e-14!39;CL:0000211!1.43e-14!39;CL:0000540!1.41e-12!33;CL:0000047!1.41e-12!33;CL:0000031!1.41e-12!33;CL:0000404!1.41e-12!33;CL:0000117!2.61e-12!23;CL:0000337!2.61e-12!23;CL:0002321!1.82e-08!70;CL:0000333!8.35e-07!10;CL:0000095!8.35e-07!10;CL:0000243!8.35e-07!10;CL:0000123!8.35e-07!10;CL:0000125!8.35e-07!10;CL:0000030!8.35e-07!10;CL:0000339!8.35e-07!10
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001016!2.15e-34!75;UBERON:0001017!9.13e-34!73;UBERON:0004121!1.93e-30!95;UBERON:0000924!1.93e-30!95;UBERON:0006601!1.93e-30!95;UBERON:0000073!4.07e-27!54;UBERON:0001049!1.20e-25!52;UBERON:0005068!1.20e-25!52;UBERON:0006241!1.20e-25!52;UBERON:0007135!1.20e-25!52;UBERON:0002346!3.32e-24!64;UBERON:0003075!3.32e-24!64;UBERON:0007284!3.32e-24!64;UBERON:0000955!8.53e-23!47;UBERON:0006238!8.53e-23!47;UBERON:0002616!3.04e-22!46;UBERON:0010371!1.39e-21!73;UBERON:0002020!1.41e-19!34;UBERON:0003080!2.52e-19!40;UBERON:0002780!6.92e-19!39;UBERON:0001890!6.92e-19!39;UBERON:0006240!6.92e-19!39;UBERON:0003056!5.46e-18!49;UBERON:0010314!7.95e-17!92;UBERON:0003528!8.33e-17!29;UBERON:0002791!8.33e-17!29;UBERON:0001893!8.33e-17!29;UBERON:0000956!8.04e-13!21;UBERON:0001869!8.04e-13!21;UBERON:0000203!8.04e-13!21;UBERON:0002619!5.82e-11!17;UBERON:0004111!4.24e-08!122;UBERON:0000025!4.72e-08!114;UBERON:0002021!9.36e-08!10;UBERON:0000411!9.36e-08!10;UBERON:0001950!9.36e-08!10;UBERON:0003076!7.19e-07!12;UBERON:0003057!7.19e-07!12
}}
}}

Revision as of 17:16, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr15:78259055..78259066,+p2@Kctd17
Mm9::chr15:78259080..78259101,+p1@Kctd17
Mm9::chr16:17509040..17509100,+p1@Lztr1
Mm9::chr1:137271676..137271687,-p6@Shisa4
Mm9::chr7:28043780..28043834,+p1@Numbl


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
nervous system2.15e-3475
central nervous system9.13e-3473
ectoderm-derived structure1.93e-3095
ectoderm1.93e-3095
presumptive ectoderm1.93e-3095
regional part of nervous system4.07e-2754
neural tube1.20e-2552
neural rod1.20e-2552
future spinal cord1.20e-2552
neural keel1.20e-2552
neurectoderm3.32e-2464
neural plate3.32e-2464
presumptive neural plate3.32e-2464
brain8.53e-2347
future brain8.53e-2347
regional part of brain3.04e-2246
ecto-epithelium1.39e-2173
gray matter1.41e-1934
anterior neural tube2.52e-1940
regional part of forebrain6.92e-1939
forebrain6.92e-1939
future forebrain6.92e-1939
pre-chordal neural plate5.46e-1849
structure with developmental contribution from neural crest7.95e-1792
brain grey matter8.33e-1729
regional part of telencephalon8.33e-1729
telencephalon8.33e-1729
cerebral cortex8.04e-1321
cerebral hemisphere8.04e-1321
pallium8.04e-1321
regional part of cerebral cortex5.82e-1117
anatomical conduit4.24e-08122
tube4.72e-08114
occipital lobe9.36e-0810
visual cortex9.36e-0810
neocortex9.36e-0810
posterior neural tube7.19e-0712
chordal neural plate7.19e-0712


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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