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MCL coexpression mm9:824: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0009854!5.61e-12!23;UBERON:0009856!5.61e-12!23;UBERON:0002107!1.40e-11!22;UBERON:0007499!1.40e-11!22;UBERON:0006925!1.40e-11!22;UBERON:0009497!1.40e-11!22;UBERON:0000015!1.40e-11!22;UBERON:0002423!1.40e-11!22;UBERON:0006235!1.40e-11!22;UBERON:0008835!1.40e-11!22;UBERON:0003894!1.40e-11!22;UBERON:0004161!1.40e-11!22;UBERON:0008836!1.40e-11!22;UBERON:0002365!1.59e-11!25;UBERON:0002330!1.59e-11!25;UBERON:0003914!1.72e-08!47
}}
}}

Revision as of 21:18, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr15:54784208..54784249,-p@chr15:54784208..54784249
-
Mm9::chr15:85566241..85566253,+p6@Ppara
Mm9::chr15:85566537..85566552,+p2@Ppara
Mm9::chr1:107253294..107253345,+p@chr1:107253294..107253345
+
Mm9::chr2:11627017..11627028,+p4@Il15ra
Mm9::chr2:11627064..11627075,+p6@Il15ra
Mm9::chr3:116672432..116672441,-p@chr3:116672432..116672441
-
Mm9::chr8:72736150..72736164,-p2@Slc25a42
Mm9::chr8:72736167..72736199,-p1@Slc25a42


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
digestive tract diverticulum5.61e-1223
sac5.61e-1223
liver1.40e-1122
epithelial sac1.40e-1122
digestive gland1.40e-1122
epithelium of foregut-midgut junction1.40e-1122
anatomical boundary1.40e-1122
hepatobiliary system1.40e-1122
foregut-midgut junction1.40e-1122
hepatic diverticulum1.40e-1122
liver primordium1.40e-1122
septum transversum1.40e-1122
liver bud1.40e-1122
exocrine gland1.59e-1125
exocrine system1.59e-1125
epithelial tube1.72e-0847


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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