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MCL coexpression mm9:723: Difference between revisions

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|coexpression_dpi_cluster_scores_median=0,0,0,0,0.088175261017747,0,0.166496801550576,0,0,0,0,0,0,0,0,0.845187631149535,0.999864097900552,0.143669040685193,0.149632666139897,0.311758393498381,0,0,0.400276338327252,0.192545433353818,0.282766428779544,0,0,0,0.139893826644815,0,0,0.918909540742122,0.208189948540879,0,0,0.0667859388724756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125665098325543,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0158508717912236,0.139204399262413,0.055272043172713,0,0,0,0,0,0,0,0.215992311900473,0.37791645191629,0,0,0,0,0.294739483532883,0.274735442323589,0.303422628732977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113326963124454,0,0.0259754887595653,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0359524366705627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0802151268900158,0.046916887530847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0340889275307749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.024646902068351,0,0.0208870423994129,0,0,0,0,0,0,0.221664011867973,0.160939271735563,0.200132122687681,0,0,0,0,0,0,0,0,0.0344366018768346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|coexpression_dpi_cluster_scores_median=0,0,0,0,0.088175261017747,0,0.166496801550576,0,0,0,0,0,0,0,0,0.845187631149535,0.999864097900552,0.143669040685193,0.149632666139897,0.311758393498381,0,0,0.400276338327252,0.192545433353818,0.282766428779544,0,0,0,0.139893826644815,0,0,0.918909540742122,0.208189948540879,0,0,0.0667859388724756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125665098325543,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0158508717912236,0.139204399262413,0.055272043172713,0,0,0,0,0,0,0,0.215992311900473,0.37791645191629,0,0,0,0,0.294739483532883,0.274735442323589,0.303422628732977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113326963124454,0,0.0259754887595653,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0359524366705627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0802151268900158,0.046916887530847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0340889275307749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.024646902068351,0,0.0208870423994129,0,0,0,0,0,0,0.221664011867973,0.160939271735563,0.200132122687681,0,0,0,0,0,0,0,0,0.0344366018768346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000050!9.33e-15!9;CL:0000553!9.82e-12!6;CL:0000556!9.82e-12!6;CL:0000049!3.54e-10!19;CL:0000839!7.10e-10!13;CL:0000548!2.94e-09!115;CL:0000255!2.94e-09!115;CL:0000219!3.11e-09!54;CL:0000068!3.11e-09!3;CL:0002202!3.11e-09!3;CL:0000069!3.11e-09!3;CL:0002632!3.11e-09!3;CL:0002368!3.11e-09!3;CL:0000307!3.11e-09!3;CL:0000377!3.11e-09!3;CL:0002371!6.98e-09!118;CL:0000349!8.81e-09!3;CL:0000351!8.81e-09!3;CL:0002320!1.22e-08!46;CL:0000134!1.22e-08!46;CL:0000988!3.28e-08!32;CL:0002032!3.28e-08!32;CL:0000037!3.28e-08!32;CL:0000566!3.28e-08!32;CL:0000837!3.28e-08!32;CL:0000763!8.12e-08!16;CL:0000215!9.54e-08!3;CL:0002031!1.40e-07!25
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0003126!3.11e-09!3;UBERON:0001005!3.11e-09!3;UBERON:0007196!3.11e-09!3;UBERON:0001558!3.11e-09!3;UBERON:0000358!8.81e-09!3;UBERON:0000307!8.81e-09!3;UBERON:0007010!8.81e-09!3;UBERON:0002384!1.22e-08!46
}}
}}

Revision as of 21:09, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr13:112748565..112748568,+p@chr13:112748565..112748568
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Mm9::chr15:78389266..78389271,+p@chr15:78389266..78389271
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Mm9::chr16:72639852..72639856,+p@chr16:72639852..72639856
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Mm9::chr19:47245689..47245693,-p1@ENSMUST00000169692
Mm9::chr1:195437410..195437413,+p@chr1:195437410..195437413
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Mm9::chr2:72923513..72923516,+p@chr2:72923513..72923516
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Mm9::chr3:40309083..40309085,+p@chr3:40309083..40309085
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Mm9::chr5:91567069..91567071,+p@chr5:91567069..91567071
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Mm9::chr7:152402163..152402164,+p@chr7:152402163..152402164
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Mm9::chr9:26999322..26999323,+p@chr9:26999322..26999323
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
megakaryocyte-erythroid progenitor cell9.33e-159
megakaryocyte progenitor cell9.82e-126
megakaryocyte9.82e-126
common myeloid progenitor3.54e-1019
myeloid lineage restricted progenitor cell7.10e-1013
animal cell2.94e-09115
eukaryotic cell2.94e-09115
motile cell3.11e-0954
duct epithelial cell3.11e-093
epithelial cell of tracheobronchial tree3.11e-093
branched duct epithelial cell3.11e-093
epithelial cell of lower respiratory tract3.11e-093
respiratory epithelial cell3.11e-093
tracheal epithelial cell3.11e-093
tracheoblast3.11e-093
somatic cell6.98e-09118
extraembryonic cell8.81e-093
trophoblast cell8.81e-093
connective tissue cell1.22e-0846
mesenchymal cell1.22e-0846
hematopoietic cell3.28e-0832
hematopoietic oligopotent progenitor cell3.28e-0832
hematopoietic stem cell3.28e-0832
angioblastic mesenchymal cell3.28e-0832
hematopoietic multipotent progenitor cell3.28e-0832
myeloid cell8.12e-0816
barrier cell9.54e-083
hematopoietic lineage restricted progenitor cell1.40e-0725

Uber Anatomy
Ontology termp-valuen
trachea3.11e-093
respiratory airway3.11e-093
tracheobronchial tree3.11e-093
lower respiratory tract3.11e-093
blastocyst8.81e-093
blastula8.81e-093
cleaving embryo8.81e-093
connective tissue1.22e-0846


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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