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MCL coexpression mm9:620: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000055!1.01e-17!49;CL:0002319!1.05e-16!43;CL:0000221!1.35e-16!44;CL:0000133!1.35e-16!44;CL:0000393!2.71e-12!39;CL:0000211!2.71e-12!39;CL:0000117!5.02e-12!23;CL:0000337!5.02e-12!23;CL:0000540!2.62e-11!33;CL:0000047!2.62e-11!33;CL:0000031!2.62e-11!33;CL:0000404!2.62e-11!33
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001016!2.61e-33!75;UBERON:0001017!1.63e-32!73;UBERON:0004121!2.09e-29!95;UBERON:0000924!2.09e-29!95;UBERON:0006601!2.09e-29!95;UBERON:0002346!1.58e-27!64;UBERON:0003075!1.58e-27!64;UBERON:0007284!1.58e-27!64;UBERON:0000073!2.28e-27!54;UBERON:0001049!4.13e-26!52;UBERON:0005068!4.13e-26!52;UBERON:0006241!4.13e-26!52;UBERON:0007135!4.13e-26!52;UBERON:0010314!1.33e-23!92;UBERON:0000955!4.46e-23!47;UBERON:0006238!4.46e-23!47;UBERON:0010371!1.31e-22!73;UBERON:0002616!1.47e-22!46;UBERON:0003056!3.26e-20!49;UBERON:0002020!6.66e-20!34;UBERON:0003080!2.78e-19!40;UBERON:0002780!1.02e-18!39;UBERON:0001890!1.02e-18!39;UBERON:0006240!1.02e-18!39;UBERON:0003528!3.77e-17!29;UBERON:0002791!3.77e-17!29;UBERON:0001893!3.77e-17!29;UBERON:0000956!4.83e-13!21;UBERON:0001869!4.83e-13!21;UBERON:0000203!4.83e-13!21;UBERON:0002619!2.86e-11!17;UBERON:0000025!2.15e-09!114;UBERON:0004111!1.18e-08!122;UBERON:0002021!7.03e-08!10;UBERON:0000411!7.03e-08!10;UBERON:0001950!7.03e-08!10;UBERON:0003076!2.36e-07!12;UBERON:0003057!2.36e-07!12
}}
}}

Revision as of 20:59, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr15:81575487..81575561,+p1@Zc3h7b
Mm9::chr2:27297977..27298090,+p1@uc008ixj.1
Mm9::chr3:57652002..57652020,-p4@Pfn2
Mm9::chr4:132833645..132833719,-p2@Tmem222
Mm9::chr9:56008747..56008775,-p2@Tspan3
Mm9::chr9:99336889..99336952,-p2@Mras
Mm9::chr9:99336967..99336981,-p6@Mras
Mm9::chr9:99337002..99337028,-p4@Mras
Mm9::chr9:99337032..99337041,-p8@Mras
Mm9::chr9:99337048..99337060,-p5@Mras
Mm9::chr9:99337066..99337100,-p3@Mras
Mm9::chr9:99337106..99337152,-p1@Mras


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
nervous system2.61e-3375
central nervous system1.63e-3273
ectoderm-derived structure2.09e-2995
ectoderm2.09e-2995
presumptive ectoderm2.09e-2995
neurectoderm1.58e-2764
neural plate1.58e-2764
presumptive neural plate1.58e-2764
regional part of nervous system2.28e-2754
neural tube4.13e-2652
neural rod4.13e-2652
future spinal cord4.13e-2652
neural keel4.13e-2652
structure with developmental contribution from neural crest1.33e-2392
brain4.46e-2347
future brain4.46e-2347
ecto-epithelium1.31e-2273
regional part of brain1.47e-2246
pre-chordal neural plate3.26e-2049
gray matter6.66e-2034
anterior neural tube2.78e-1940
regional part of forebrain1.02e-1839
forebrain1.02e-1839
future forebrain1.02e-1839
brain grey matter3.77e-1729
regional part of telencephalon3.77e-1729
telencephalon3.77e-1729
cerebral cortex4.83e-1321
cerebral hemisphere4.83e-1321
pallium4.83e-1321
regional part of cerebral cortex2.86e-1117
tube2.15e-09114
anatomical conduit1.18e-08122
occipital lobe7.03e-0810
visual cortex7.03e-0810
neocortex7.03e-0810
posterior neural tube2.36e-0712
chordal neural plate2.36e-0712


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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