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|coexpression_dpi_cluster_scores_median=0,-0.09785992067807,-0.09785992067807,-0.09785992067807,-0.0486868322374133,0,-0.0499712721530722,0,-0.0486868322374133,-0.00301789797513617,0,0,0,0,0,0.00241933195176725,0,0,0,0,0.37333280931477,0.0205563265474198,0,-0.09785992067807,-0.09785992067807,-0.0095238354081447,-0.0910976506956542,-0.0910134352530155,-0.0494995548531446,-0.09785992067807,-0.0543722107863722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00669617814873935,0,0,0,0,0,0,-0.0082368356367517,-0.0325296557151934,0,0,0,0,0,0,0,-0.0429688720471861,0,-0.09785992067807,0,0,0,0,0,0.00383988333827308,0,0,0,0,0,0.052188704109448,0.00272366841092908,0,-0.0103596367373845,0,0.0476478996445667,0,0.0308766538450896,0,0,0,0,-0.00637235426855475,0,0,0,0,0,0,0.45113795689128,0,0,0,0.00141973395201889,-0.0615391901497438,0,-0.0162242014133791,0,0,0,0.201006987150938,0,0.0197094833422288,-0.00184099029449259,-0.0031346643861887,0,0,0.0335504508521491,0.0719362749326292,0,0.212189200719779,0.177529838357295,0.278540149620513,0.428338008865955,0.429129450807042,-0.0486868322374133,0.122938298415323,0.0776931922768264,-0.0552155519224463,0.0245731644447729,0,0.000486256203243357,0.0708066249777049,0,0,0.0696031033168343,0,0.0403496396180071,0,0,0.19276341374741,0,0.153744715451339,0,0,0,0.0300433264773971,0.0275753297640427,0.0523528812100954,0.0501956575445277,0.175969821739559,-0.00629720415260085,0,0,0,0,0.0893745612853938,0.0448254555535511,0,0,0,0,0.02609024249924,0.0862159500807601,0.0719048481885784,0.0371887963399578,0.136583055313508,0.14973058789424,0.150310361322107,0.172803036442391,0.199707663231786,0.29634351916365,0.33762884368851,0.47196267786811,0.541181318998026,0.444380496276505,0.598124806320556,0,0,-0.0164143987607443,-0.0491730884406566,0,0,0,0,-0.00508406194991635,-0.0272868844093568,-0.00289514788428102,-0.0373909869969717,0,0,-0.0061721779079979,-0.027031923369283,0,0,-0.0056110285103842,0,0,0,0,0,0,0,0.0485340659020439,0.0393447914419786,0.0124117545189615,0.0475447971187236,0,0.00334693293070476,0.0097950177757019,0,0,0,0,0,0.0100762086657223,0,0.00262812284119118,0.0294904271188366,0.051614958430906,0.0138298657565179,0.0235381078931255,0.0210925961051042,0,-0.0151274737655264,0,0,0,0.0387082368603573,0.0103344163437341,0,0,0.0085546778318528,0.0244257927642801,0,0,0,0,0.000229389259643331,0.137882400394608,0.107004908434913,0,0.994020925825978,0,0,0,0,0,0,0,0,0,0.0732304404754642,0.0151649608688156,0,0.00918785692504755,0,0,-0.00148959330471346,0,0,0,0,-0.0262530489665262,-0.0325699943283885,0,0,-0.0059331133015475,0,0,0,0,0,0,0,0,0,0,0,0,0.10428622656499,0.131150805421005,0.0702005986130606,0.0449935781311159,0.0660055475634404,0,0.150043829224338,0,0,0,0,0.00058157550931681,0,0,0.00357666585880456,0,0,0,0,-0.0243893689693697,-0.00794407983340505,-0.09785992067807,-0.0310835745576162,0,0.0103302544924846,0,0,1.05290446626512,0,0,0,0,0,0,0,0,0.361792936658548,0.775794000512413,0,0,0.0087701470530265,0.00312401591585254,0,0.0778162142185862,0,0,0,0,0,0,0,0,0.508936448216627,0,0,-0.0288606944821812,0.0582263116495842,0,0,0,0,0,0,0,0,0,0,0.062837234159472,0,0.019719684489165,0,0,0,0,0.00306993711485981,0.00921790295963635,0.0676745926258036,0.202307851480955,0.15628415295939,0.17419470624586,0.104600022911909,0.186443048950263,0.137154527438878,0.151887751600283,0.21584876885127,0.198919494736353,0.0377451100291994,0.102512085875359,0.100447297768479,0.132924208491886,0.12371418698862,0.176826743748551,0.109965017729521,0.169342968499384,0.161143474742311,0.13354598900444,0.126604887871452,0.140434495348848,0.177384053737587,0.115366743313234,0,0.102086788175922,0.159671914867402,0.148982201447044,0.164082362945089,0.170004882748698,0.199461972499442,0.230907198759394,0.185660734839627,0.226702541906396,0.317289529781984,0.454160327551621
|coexpression_dpi_cluster_scores_median=0,-0.09785992067807,-0.09785992067807,-0.09785992067807,-0.0486868322374133,0,-0.0499712721530722,0,-0.0486868322374133,-0.00301789797513617,0,0,0,0,0,0.00241933195176725,0,0,0,0,0.37333280931477,0.0205563265474198,0,-0.09785992067807,-0.09785992067807,-0.0095238354081447,-0.0910976506956542,-0.0910134352530155,-0.0494995548531446,-0.09785992067807,-0.0543722107863722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00669617814873935,0,0,0,0,0,0,-0.0082368356367517,-0.0325296557151934,0,0,0,0,0,0,0,-0.0429688720471861,0,-0.09785992067807,0,0,0,0,0,0.00383988333827308,0,0,0,0,0,0.052188704109448,0.00272366841092908,0,-0.0103596367373845,0,0.0476478996445667,0,0.0308766538450896,0,0,0,0,-0.00637235426855475,0,0,0,0,0,0,0.45113795689128,0,0,0,0.00141973395201889,-0.0615391901497438,0,-0.0162242014133791,0,0,0,0.201006987150938,0,0.0197094833422288,-0.00184099029449259,-0.0031346643861887,0,0,0.0335504508521491,0.0719362749326292,0,0.212189200719779,0.177529838357295,0.278540149620513,0.428338008865955,0.429129450807042,-0.0486868322374133,0.122938298415323,0.0776931922768264,-0.0552155519224463,0.0245731644447729,0,0.000486256203243357,0.0708066249777049,0,0,0.0696031033168343,0,0.0403496396180071,0,0,0.19276341374741,0,0.153744715451339,0,0,0,0.0300433264773971,0.0275753297640427,0.0523528812100954,0.0501956575445277,0.175969821739559,-0.00629720415260085,0,0,0,0,0.0893745612853938,0.0448254555535511,0,0,0,0,0.02609024249924,0.0862159500807601,0.0719048481885784,0.0371887963399578,0.136583055313508,0.14973058789424,0.150310361322107,0.172803036442391,0.199707663231786,0.29634351916365,0.33762884368851,0.47196267786811,0.541181318998026,0.444380496276505,0.598124806320556,0,0,-0.0164143987607443,-0.0491730884406566,0,0,0,0,-0.00508406194991635,-0.0272868844093568,-0.00289514788428102,-0.0373909869969717,0,0,-0.0061721779079979,-0.027031923369283,0,0,-0.0056110285103842,0,0,0,0,0,0,0,0.0485340659020439,0.0393447914419786,0.0124117545189615,0.0475447971187236,0,0.00334693293070476,0.0097950177757019,0,0,0,0,0,0.0100762086657223,0,0.00262812284119118,0.0294904271188366,0.051614958430906,0.0138298657565179,0.0235381078931255,0.0210925961051042,0,-0.0151274737655264,0,0,0,0.0387082368603573,0.0103344163437341,0,0,0.0085546778318528,0.0244257927642801,0,0,0,0,0.000229389259643331,0.137882400394608,0.107004908434913,0,0.994020925825978,0,0,0,0,0,0,0,0,0,0.0732304404754642,0.0151649608688156,0,0.00918785692504755,0,0,-0.00148959330471346,0,0,0,0,-0.0262530489665262,-0.0325699943283885,0,0,-0.0059331133015475,0,0,0,0,0,0,0,0,0,0,0,0,0.10428622656499,0.131150805421005,0.0702005986130606,0.0449935781311159,0.0660055475634404,0,0.150043829224338,0,0,0,0,0.00058157550931681,0,0,0.00357666585880456,0,0,0,0,-0.0243893689693697,-0.00794407983340505,-0.09785992067807,-0.0310835745576162,0,0.0103302544924846,0,0,1.05290446626512,0,0,0,0,0,0,0,0,0.361792936658548,0.775794000512413,0,0,0.0087701470530265,0.00312401591585254,0,0.0778162142185862,0,0,0,0,0,0,0,0,0.508936448216627,0,0,-0.0288606944821812,0.0582263116495842,0,0,0,0,0,0,0,0,0,0,0.062837234159472,0,0.019719684489165,0,0,0,0,0.00306993711485981,0.00921790295963635,0.0676745926258036,0.202307851480955,0.15628415295939,0.17419470624586,0.104600022911909,0.186443048950263,0.137154527438878,0.151887751600283,0.21584876885127,0.198919494736353,0.0377451100291994,0.102512085875359,0.100447297768479,0.132924208491886,0.12371418698862,0.176826743748551,0.109965017729521,0.169342968499384,0.161143474742311,0.13354598900444,0.126604887871452,0.140434495348848,0.177384053737587,0.115366743313234,0,0.102086788175922,0.159671914867402,0.148982201447044,0.164082362945089,0.170004882748698,0.199461972499442,0.230907198759394,0.185660734839627,0.226702541906396,0.317289529781984,0.454160327551621
|gostat_on_MCL_coexpression=GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0179285596888183;53857,22210!GO:0008611;ether lipid biosynthetic process;0.0179285596888183;14712!GO:0016287;glycerone-phosphate O-acyltransferase activity;0.0179285596888183;14712!GO:0046485;ether lipid metabolic process;0.0179285596888183;14712!GO:0004083;bisphosphoglycerate phosphatase activity;0.0238929610542396;56012!GO:0004082;bisphosphoglycerate mutase activity;0.0238929610542396;56012!GO:0043034;costamere;0.0238929610542396;!GO:0005782;peroxisomal matrix;0.0238929610542396;14712!GO:0004619;phosphoglycerate mutase activity;0.0238929610542396;56012!GO:0007288;sperm axoneme assembly;0.0238929610542396;22210!GO:0035084;flagellum axoneme biogenesis;0.0238929610542396;22210!GO:0016413;O-acetyltransferase activity;0.0238929610542396;14712!GO:0007017;microtubule-based process;0.0255953936678224;53857,22210!GO:0035082;axoneme biogenesis;0.0255953936678224;22210!GO:0009296;flagellum biogenesis;0.028662129411539;22210!GO:0043064;flagellum organization and biogenesis;0.0301607463160448;22210!GO:0044265;cellular macromolecule catabolic process;0.0301607463160448;56012,22210!GO:0046504;glycerol ether biosynthetic process;0.0301607463160448;14712!GO:0045017;glycerolipid biosynthetic process;0.0301607463160448;14712!GO:0001578;microtubule bundle formation;0.0306942858054484;22210!GO:0016868;intramolecular transferase activity, phosphotransferases;0.0306942858054484;56012!GO:0009057;macromolecule catabolic process;0.0431722467445519;56012,22210!
|gostat_on_MCL_coexpression=GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0179285596888183;53857,22210!GO:0008611;ether lipid biosynthetic process;0.0179285596888183;14712!GO:0016287;glycerone-phosphate O-acyltransferase activity;0.0179285596888183;14712!GO:0046485;ether lipid metabolic process;0.0179285596888183;14712!GO:0004083;bisphosphoglycerate phosphatase activity;0.0238929610542396;56012!GO:0004082;bisphosphoglycerate mutase activity;0.0238929610542396;56012!GO:0043034;costamere;0.0238929610542396;!GO:0005782;peroxisomal matrix;0.0238929610542396;14712!GO:0004619;phosphoglycerate mutase activity;0.0238929610542396;56012!GO:0007288;sperm axoneme assembly;0.0238929610542396;22210!GO:0035084;flagellum axoneme biogenesis;0.0238929610542396;22210!GO:0016413;O-acetyltransferase activity;0.0238929610542396;14712!GO:0007017;microtubule-based process;0.0255953936678224;53857,22210!GO:0035082;axoneme biogenesis;0.0255953936678224;22210!GO:0009296;flagellum biogenesis;0.028662129411539;22210!GO:0043064;flagellum organization and biogenesis;0.0301607463160448;22210!GO:0044265;cellular macromolecule catabolic process;0.0301607463160448;56012,22210!GO:0046504;glycerol ether biosynthetic process;0.0301607463160448;14712!GO:0045017;glycerolipid biosynthetic process;0.0301607463160448;14712!GO:0001578;microtubule bundle formation;0.0306942858054484;22210!GO:0016868;intramolecular transferase activity, phosphotransferases;0.0306942858054484;56012!GO:0009057;macromolecule catabolic process;0.0431722467445519;56012,22210!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0007100!6.23e-07!18;UBERON:0000948!6.23e-07!18;UBERON:0005498!6.23e-07!18;UBERON:0004140!6.23e-07!18;UBERON:0009881!6.23e-07!18;UBERON:0004141!6.23e-07!18;UBERON:0003084!6.23e-07!18;UBERON:0007005!6.23e-07!18;UBERON:0004139!6.23e-07!18;UBERON:0004291!6.23e-07!18
}}
}}

Revision as of 20:50, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:51814250..51814277,-p3@Ube2b
Mm9::chr11:5703272..5703283,+p@chr11:5703272..5703283
+
Mm9::chr11:5703322..5703350,-p@chr11:5703322..5703350
-
Mm9::chr11:5703561..5703572,-p@chr11:5703561..5703572
-
Mm9::chr12:112216830..112216853,-p4@Ankrd9
Mm9::chr16:8470856..8470900,+p1@Mettl22
Mm9::chr19:18745302..18745339,+p1@2410127L17Rik
Mm9::chr3:33919005..33919032,+p1@Fxr1
Mm9::chr3:87710813..87710831,+p5@Hdgf
Mm9::chr6:121160730..121160737,+p4@Tuba8
Mm9::chr6:121160789..121160804,+p3@Tuba8
Mm9::chr6:121160809..121160831,+p1@Tuba8
Mm9::chr8:127386932..127386989,+p1@Gnpat
Mm9::chr8:87339523..87339533,-p@chr8:87339523..87339533
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0000226microtubule cytoskeleton organization and biogenesis0.0179285596888183
GO:0008611ether lipid biosynthetic process0.0179285596888183
GO:0016287glycerone-phosphate O-acyltransferase activity0.0179285596888183
GO:0046485ether lipid metabolic process0.0179285596888183
GO:0004083bisphosphoglycerate phosphatase activity0.0238929610542396
GO:0004082bisphosphoglycerate mutase activity0.0238929610542396
GO:0043034costamere0.0238929610542396
GO:0005782peroxisomal matrix0.0238929610542396
GO:0004619phosphoglycerate mutase activity0.0238929610542396
GO:0007288sperm axoneme assembly0.0238929610542396
GO:0035084flagellum axoneme biogenesis0.0238929610542396
GO:0016413O-acetyltransferase activity0.0238929610542396
GO:0007017microtubule-based process0.0255953936678224
GO:0035082axoneme biogenesis0.0255953936678224
GO:0009296flagellum biogenesis0.028662129411539
GO:0043064flagellum organization and biogenesis0.0301607463160448
GO:0044265cellular macromolecule catabolic process0.0301607463160448
GO:0046504glycerol ether biosynthetic process0.0301607463160448
GO:0045017glycerolipid biosynthetic process0.0301607463160448
GO:0001578microtubule bundle formation0.0306942858054484
GO:0016868intramolecular transferase activity, phosphotransferases0.0306942858054484
GO:0009057macromolecule catabolic process0.0431722467445519



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
primary circulatory organ6.23e-0718
heart6.23e-0718
primitive heart tube6.23e-0718
primary heart field6.23e-0718
anterior lateral plate mesoderm6.23e-0718
heart tube6.23e-0718
heart primordium6.23e-0718
cardiac mesoderm6.23e-0718
cardiogenic plate6.23e-0718
heart rudiment6.23e-0718


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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