Personal tools

MCL coexpression mm9:2832: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
|coexpression_dpi_cluster_scores_mean=0.114108908404787,-0.0738993020295209,-0.096253415210908,0.0114242524959126,-0.0177388137560073,0.009375746598345,-0.0237028740110092,-0.1505410039748,-0.1505410039748,-0.1505410039748,-0.1505410039748,-0.1505410039748,-0.1505410039748,-0.1505410039748,-0.0502462281672964,-0.0818306922145262,-0.073762010267167,0.00195526353967926,-0.0531370097273014,-0.1505410039748,0.126190765671655,-0.0759026566028856,-0.1505410039748,-0.11035135557179,-0.1505410039748,-0.1505410039748,-0.0986852053354397,-0.0501131188684105,-0.038603366128906,-0.0323641796923728,-0.0296312114321943,-0.1505410039748,-0.1505410039748,-0.1505410039748,-0.01852412579338,-0.108988601083604,-0.123645146950518,-0.1505410039748,-0.1505410039748,-0.1505410039748,-0.0835697366330172,-0.1505410039748,-0.1505410039748,-0.0626914319284595,-0.10983675863867,-0.126145864643564,-0.1505410039748,-0.00483745673092844,-0.0245293796549285,0.0279039940748722,0.0639027960920677,0.045551480985007,-0.017184398114255,-0.0715809158102694,-0.1505410039748,-0.0345962426075843,0.0307464402687363,-0.0903392526012841,0.564846881127972,0.537183649377557,0.76091501786342,-0.0756371794311267,-0.1505410039748,-0.1505410039748,-0.1505410039748,-0.1505410039748,-0.0577145710148702,-0.0209429755112669,0.46759280831188,0.571286208726405,0.474905392931549,0.850032925381307,0.852989932283321,0.665976805855624,0.648645302092586,1.122953558622,0.565742190136536,0.441104490200019,0.428278459370092,0.484333654489436,0.465039257751748,0.556025796027752,0.497947224787541,0.399243733267438,0.442240326178236,0.840209594156914,0.80512189448963,0.811783392192849,-0.119558428013491,-0.0581742102887783,-0.00224472431223093,-0.1505410039748,-0.0754403802484721,-0.1505410039748,-0.1505410039748,-0.1505410039748,-0.131516295751803,-0.127759149101772,-0.056534982479436,-0.0731570431008082,0.264495791766804,-0.1505410039748,0.42338402264333,-0.1505410039748,-0.0700911123451204,-0.0851571481052127,0.0517407485138515,-0.105112577365209,0.0355812136934025,-0.0187992506992483,-0.0122966025326656,0.0218703448615787,0.000815884586978335,0.00212177237391577,0.135023958148366,-0.0579184246581907,-0.118562887353495,-0.130989838118453,-0.1505410039748,-0.0932695567006983,-0.0686979776802048,-0.0524039303831878,-0.1505410039748,0.24477804424608,0.235399451820232,-0.117607050105153,-0.1505410039748,-0.1505410039748,-0.1505410039748,0.344015463477676,0.251859549802145,0.705921918486206,0.383851650435112,0.375445735736629,0.259381735542214,0.372174052903492,0.125809661109135,0.0654855733011016,-0.0587010006050802,-0.0188191440518743,0.0560158275505576,0.0361759300714617,0.0484475842175721,0.208613780532347,0.177056698899692,0.157866813249933,0.164458875889236,0.18289281751022,0.111450982818686,0.133136179561393,0.172280211366562,0.0637169007256934,0.162313327753544,0.0522920775564087,-0.0137016877189797,0.0928124737814364,-0.1505410039748,-0.117389182896666,-0.1505410039748,0.0165618042940515,0.0223720628513665,-0.0336312132528185,-0.0728558077745587,-0.07649952245236,0.0270815038511243,-0.0399691707445461,-0.1505410039748,0.0688119078608537,-0.106433128625052,-0.106530698946397,-0.0375141680728066,-0.0936552238909033,-0.1505410039748,0.0040175079443958,0.294785229703124,0.388986052328001,-0.109211548085753,-0.0659858477056178,0.0261360273850343,0.118381593470952,0.0460431045441473,-0.0383128879733244,-0.0474823094549696,-0.0786575467652599,-0.0381054463099981,-0.0360583628041188,-0.0367394551039509,-0.0342911608152796,-0.0580894712219071,-0.0577131165812343,-0.0985320889898941,-0.0979607698263102,-0.0405379355739482,0.134142542744407,0.172585510174156,0.123050189453003,0.0980858388338614,0.133720335045689,0.0654713057938392,-0.0931616636165297,-0.111009495877385,-0.088102807450943,-0.1505410039748,-0.128203267668755,-0.102545037113644,-0.1505410039748,-0.123802628344795,-0.0360133290538988,-0.090953779063387,-0.0481403024662879,0.104213223135148,-0.115420748554907,-0.0215486499380044,-0.0700021129471784,-0.0410235109622505,-0.117939309313721,-0.126654280303766,-0.1505410039748,-0.008762645249182,0.0368487371953058,0.0323057112326586,0.199013236804661,0.129692546301117,-0.038218156872365,0.122622802795622,0.248330736847317,0.151936157118941,0.145574522127605,0.14254646756463,0.162233164787877,0.0707050055670282,0.119520717540561,-0.1505410039748,-0.0876674152927275,-0.1505410039748,-0.115264622286263,0.340191030110325,0.325609176902063,-0.1505410039748,-0.0913677637539383,-0.0711452933467762,-0.0669963225774437,0.0274463536575166,-0.0722921313186118,-0.0230921744367621,-0.020651534778237,-0.101335068315967,0.0332053740050404,0.0710610234192439,0.689597063853885,0.0665471637661532,0.0325268339104771,0.114697923489313,-0.0510585763620978,-0.1505410039748,0.136362265946085,0.0576581865468941,-0.0042496159604566,-0.0161663294595754,0.0386739265823793,-0.0304605313728254,0.0585282413846581,0.103334681676278,-0.0796277648350511,-0.1505410039748,-0.1505410039748,0.0982826446293234,0.0411420678422962,0.00483208838079506,0.0540066327959525,0.0461686744160815,0.213739821260928,0.187011909535432,0.213927109877735,-0.0391254631013407,-0.099405155153126,-0.068798008465221,-0.128446497275186,0.0920529061747404,0.0048142320766654,-0.0413548963739098,-0.0195076840047138,-0.0386599764454202,0.289621654688212,-0.0851483563990284,0.146486474002093,0.00324783062221963,-0.104257351584676,-0.0435796271895568,-0.095999219717736,-0.1505410039748,-0.131578885236004,-0.096472554317312,-0.1505410039748,0.0283255786545892,0.0269851276058818,0.0234342635839273,0.00793048468764447,-0.0490084856502581,-0.0262807915897725,-0.0227567710194546,-0.0468333755504837,-0.0496121937543375,-0.1505410039748,-0.0412589133565181,0.0107534040620589,0.0321748582266978,0.0982090680282587,0.0155845368356491,0.126471512310237,0.244331022929095,0.234189021412575,0.226389099408778,-0.0364140589301061,-0.113899010451233,-0.110787817577431,0.0590803725669613,-0.0138900511007575,0.0255893851814649,0.00423776267832967,-0.0174386162303524,-0.0255822615272802,-0.0302439649702753,-0.0186583049505668,0.0886027460509373,0.0035682348087449,-0.0275939640141124,-0.0207742480223869,0.0170568836619853,-0.120957963308887,-0.0683326847617442,-0.103600156410268,0.0247024377544451,-0.0526836640354368,-0.1505410039748,-0.0601762700290282,-0.04723952511705,0.00887846505414533,0.576788933332257,0.638636165230345,0.698877404994982,0.803082199114742,0.481079267228312,0.491702158206541,0.555790122320272,0.293026026675377,0.29740769591794,0.426697666889043,0.0951455674113255,0.141873526673334,0.113526605032264,0.0461262692459773,-0.0092888110639462,0.183821439707074,0.186445064258315,0.142692587842729,0.147876089504252,0.0748718907683036,0.148394557794526,0.162276511727668,0.119752272487172,0.130315524592504,0.118867886919569,0.22976381674663,0.124064768097904,0.153930654122068,0.23810255500868,0.106697373994034,0.139091349495828,0.196935665928784,0.201021289620582,0.200720101859915,0.136678417468011,0.166033888148309,0.158916299940469,0.263615233765891,0.134959544615318,0.191810196756041,0.109209182834503,0.202754042824843,0.255891827367396,0.173519804372833,0.103498999225764,0.276459771467578,0.181189747945044,0.170813748903345,0.0323542601879506,-0.0447282827376647,-0.074099568605277
|coexpression_dpi_cluster_scores_mean=0.114108908404787,-0.0738993020295209,-0.096253415210908,0.0114242524959126,-0.0177388137560073,0.009375746598345,-0.0237028740110092,-0.1505410039748,-0.1505410039748,-0.1505410039748,-0.1505410039748,-0.1505410039748,-0.1505410039748,-0.1505410039748,-0.0502462281672964,-0.0818306922145262,-0.073762010267167,0.00195526353967926,-0.0531370097273014,-0.1505410039748,0.126190765671655,-0.0759026566028856,-0.1505410039748,-0.11035135557179,-0.1505410039748,-0.1505410039748,-0.0986852053354397,-0.0501131188684105,-0.038603366128906,-0.0323641796923728,-0.0296312114321943,-0.1505410039748,-0.1505410039748,-0.1505410039748,-0.01852412579338,-0.108988601083604,-0.123645146950518,-0.1505410039748,-0.1505410039748,-0.1505410039748,-0.0835697366330172,-0.1505410039748,-0.1505410039748,-0.0626914319284595,-0.10983675863867,-0.126145864643564,-0.1505410039748,-0.00483745673092844,-0.0245293796549285,0.0279039940748722,0.0639027960920677,0.045551480985007,-0.017184398114255,-0.0715809158102694,-0.1505410039748,-0.0345962426075843,0.0307464402687363,-0.0903392526012841,0.564846881127972,0.537183649377557,0.76091501786342,-0.0756371794311267,-0.1505410039748,-0.1505410039748,-0.1505410039748,-0.1505410039748,-0.0577145710148702,-0.0209429755112669,0.46759280831188,0.571286208726405,0.474905392931549,0.850032925381307,0.852989932283321,0.665976805855624,0.648645302092586,1.122953558622,0.565742190136536,0.441104490200019,0.428278459370092,0.484333654489436,0.465039257751748,0.556025796027752,0.497947224787541,0.399243733267438,0.442240326178236,0.840209594156914,0.80512189448963,0.811783392192849,-0.119558428013491,-0.0581742102887783,-0.00224472431223093,-0.1505410039748,-0.0754403802484721,-0.1505410039748,-0.1505410039748,-0.1505410039748,-0.131516295751803,-0.127759149101772,-0.056534982479436,-0.0731570431008082,0.264495791766804,-0.1505410039748,0.42338402264333,-0.1505410039748,-0.0700911123451204,-0.0851571481052127,0.0517407485138515,-0.105112577365209,0.0355812136934025,-0.0187992506992483,-0.0122966025326656,0.0218703448615787,0.000815884586978335,0.00212177237391577,0.135023958148366,-0.0579184246581907,-0.118562887353495,-0.130989838118453,-0.1505410039748,-0.0932695567006983,-0.0686979776802048,-0.0524039303831878,-0.1505410039748,0.24477804424608,0.235399451820232,-0.117607050105153,-0.1505410039748,-0.1505410039748,-0.1505410039748,0.344015463477676,0.251859549802145,0.705921918486206,0.383851650435112,0.375445735736629,0.259381735542214,0.372174052903492,0.125809661109135,0.0654855733011016,-0.0587010006050802,-0.0188191440518743,0.0560158275505576,0.0361759300714617,0.0484475842175721,0.208613780532347,0.177056698899692,0.157866813249933,0.164458875889236,0.18289281751022,0.111450982818686,0.133136179561393,0.172280211366562,0.0637169007256934,0.162313327753544,0.0522920775564087,-0.0137016877189797,0.0928124737814364,-0.1505410039748,-0.117389182896666,-0.1505410039748,0.0165618042940515,0.0223720628513665,-0.0336312132528185,-0.0728558077745587,-0.07649952245236,0.0270815038511243,-0.0399691707445461,-0.1505410039748,0.0688119078608537,-0.106433128625052,-0.106530698946397,-0.0375141680728066,-0.0936552238909033,-0.1505410039748,0.0040175079443958,0.294785229703124,0.388986052328001,-0.109211548085753,-0.0659858477056178,0.0261360273850343,0.118381593470952,0.0460431045441473,-0.0383128879733244,-0.0474823094549696,-0.0786575467652599,-0.0381054463099981,-0.0360583628041188,-0.0367394551039509,-0.0342911608152796,-0.0580894712219071,-0.0577131165812343,-0.0985320889898941,-0.0979607698263102,-0.0405379355739482,0.134142542744407,0.172585510174156,0.123050189453003,0.0980858388338614,0.133720335045689,0.0654713057938392,-0.0931616636165297,-0.111009495877385,-0.088102807450943,-0.1505410039748,-0.128203267668755,-0.102545037113644,-0.1505410039748,-0.123802628344795,-0.0360133290538988,-0.090953779063387,-0.0481403024662879,0.104213223135148,-0.115420748554907,-0.0215486499380044,-0.0700021129471784,-0.0410235109622505,-0.117939309313721,-0.126654280303766,-0.1505410039748,-0.008762645249182,0.0368487371953058,0.0323057112326586,0.199013236804661,0.129692546301117,-0.038218156872365,0.122622802795622,0.248330736847317,0.151936157118941,0.145574522127605,0.14254646756463,0.162233164787877,0.0707050055670282,0.119520717540561,-0.1505410039748,-0.0876674152927275,-0.1505410039748,-0.115264622286263,0.340191030110325,0.325609176902063,-0.1505410039748,-0.0913677637539383,-0.0711452933467762,-0.0669963225774437,0.0274463536575166,-0.0722921313186118,-0.0230921744367621,-0.020651534778237,-0.101335068315967,0.0332053740050404,0.0710610234192439,0.689597063853885,0.0665471637661532,0.0325268339104771,0.114697923489313,-0.0510585763620978,-0.1505410039748,0.136362265946085,0.0576581865468941,-0.0042496159604566,-0.0161663294595754,0.0386739265823793,-0.0304605313728254,0.0585282413846581,0.103334681676278,-0.0796277648350511,-0.1505410039748,-0.1505410039748,0.0982826446293234,0.0411420678422962,0.00483208838079506,0.0540066327959525,0.0461686744160815,0.213739821260928,0.187011909535432,0.213927109877735,-0.0391254631013407,-0.099405155153126,-0.068798008465221,-0.128446497275186,0.0920529061747404,0.0048142320766654,-0.0413548963739098,-0.0195076840047138,-0.0386599764454202,0.289621654688212,-0.0851483563990284,0.146486474002093,0.00324783062221963,-0.104257351584676,-0.0435796271895568,-0.095999219717736,-0.1505410039748,-0.131578885236004,-0.096472554317312,-0.1505410039748,0.0283255786545892,0.0269851276058818,0.0234342635839273,0.00793048468764447,-0.0490084856502581,-0.0262807915897725,-0.0227567710194546,-0.0468333755504837,-0.0496121937543375,-0.1505410039748,-0.0412589133565181,0.0107534040620589,0.0321748582266978,0.0982090680282587,0.0155845368356491,0.126471512310237,0.244331022929095,0.234189021412575,0.226389099408778,-0.0364140589301061,-0.113899010451233,-0.110787817577431,0.0590803725669613,-0.0138900511007575,0.0255893851814649,0.00423776267832967,-0.0174386162303524,-0.0255822615272802,-0.0302439649702753,-0.0186583049505668,0.0886027460509373,0.0035682348087449,-0.0275939640141124,-0.0207742480223869,0.0170568836619853,-0.120957963308887,-0.0683326847617442,-0.103600156410268,0.0247024377544451,-0.0526836640354368,-0.1505410039748,-0.0601762700290282,-0.04723952511705,0.00887846505414533,0.576788933332257,0.638636165230345,0.698877404994982,0.803082199114742,0.481079267228312,0.491702158206541,0.555790122320272,0.293026026675377,0.29740769591794,0.426697666889043,0.0951455674113255,0.141873526673334,0.113526605032264,0.0461262692459773,-0.0092888110639462,0.183821439707074,0.186445064258315,0.142692587842729,0.147876089504252,0.0748718907683036,0.148394557794526,0.162276511727668,0.119752272487172,0.130315524592504,0.118867886919569,0.22976381674663,0.124064768097904,0.153930654122068,0.23810255500868,0.106697373994034,0.139091349495828,0.196935665928784,0.201021289620582,0.200720101859915,0.136678417468011,0.166033888148309,0.158916299940469,0.263615233765891,0.134959544615318,0.191810196756041,0.109209182834503,0.202754042824843,0.255891827367396,0.173519804372833,0.103498999225764,0.276459771467578,0.181189747945044,0.170813748903345,0.0323542601879506,-0.0447282827376647,-0.074099568605277
|coexpression_dpi_cluster_scores_median=0.00799880060177421,-0.0593039769855168,-0.126366316529678,0,0,0,0,-0.162393929103046,-0.162393929103046,-0.162393929103046,-0.162393929103046,-0.162393929103046,-0.162393929103046,-0.162393929103046,0,-0.0830981475405327,-0.058892101698455,0,0,-0.162393929103046,0.0513352023468759,-0.0837262131815788,-0.162393929103046,-0.162393929103046,-0.162393929103046,-0.162393929103046,-0.133661686903273,-0.0726901120853882,-0.0225001024582314,0,-0.013475124976932,-0.162393929103046,-0.162393929103046,-0.162393929103046,0,-0.162393929103046,-0.0817063580302007,-0.162393929103046,-0.162393929103046,-0.162393929103046,-0.0883152807960055,-0.162393929103046,-0.162393929103046,-0.0771789584080236,-0.0822171688634988,-0.162393929103046,-0.162393929103046,0,-0.00422076869762986,0.0371664566338589,0.0307155484415771,0,0,0,-0.162393929103046,-0.0408197025099585,0,0,0.559920262766389,0.6362504879154,0.681511539650463,-0.0645176091903342,-0.162393929103046,-0.162393929103046,-0.162393929103046,-0.162393929103046,-0.0107497839415645,-0.0211893409187437,0.472771456909598,0.583779490266185,0.461337122353058,0.748298474901121,0.929905593734836,0.570776745428642,0.638947419078539,1.08178266524237,0.591981642133384,0.547956281507052,0.476670068199904,0.44327570858057,0.451748509378648,0.453080580439353,0.47611489442555,0.292130317667728,0.469436514533411,0.952064222933132,0.852600888440088,0.887075785239594,-0.162393929103046,0,0,-0.162393929103046,-0.0639272116423704,-0.162393929103046,-0.162393929103046,-0.162393929103046,-0.162393929103046,-0.162393929103046,-0.062097149789548,0,0.289540487706914,-0.162393929103046,0.495823341245505,-0.162393929103046,-0.00615316908074529,-0.0643181452986652,0.0141935459116234,-0.162393929103046,0.0194956880231837,0,0,0,0,0,0.12556663783742,-0.0234600601281321,-0.162393929103046,-0.162393929103046,-0.162393929103046,-0.117414740999049,-0.00352414059713532,0,-0.162393929103046,0.229229850861718,0.25649362922744,-0.0635920674941044,-0.162393929103046,-0.162393929103046,-0.162393929103046,0.413575893893592,0.212812623040377,0.668842182871089,0.378252889687206,0.29202291890114,0.199022663659646,0.491050715249903,0.142611939615683,0.0476662526616548,-0.0645389617041527,0,0.0206061644666828,0.0431104925716752,0.0289120796817704,0.236768750843846,0.210652386824584,0.195757478334061,0.201560865928203,0.19810800674925,0.0283830123056198,0.126644092371081,0.186233685476851,0.0321577742293861,0.180052414771162,0.0671610441117126,0,0.0919455464851083,-0.162393929103046,-0.0629384658686429,-0.162393929103046,0,0,-0.0104045588439876,-0.0561734942206301,-0.084385328351095,0,0,-0.162393929103046,0.00405435233678725,-0.0962321160784243,-0.0963784715604416,-0.0404156705844447,-0.10313352974585,-0.162393929103046,0,0.231017184898249,0.405443555041653,-0.0384055614359057,-0.0355636140138075,0.0259939803162235,0.122926295601586,0,-0.0323348417459494,-0.0672585398368564,-0.0867646325109647,0,-0.0387389376165583,-0.0451981006836329,0,-0.085039075702038,-0.0107454206406569,-0.00636718414832838,-0.0835235778803117,0,0.0928157406891988,0.0385542016231809,0.0963882486275645,0.0367734182813083,0.134688132538284,0.0332646739164086,-0.102599549173511,-0.0437994048108001,-0.11186060596195,-0.162393929103046,-0.0953807201849108,-0.145241182237885,-0.162393929103046,-0.162393929103046,0,-0.110467408087115,0,0.132691631088133,-0.162393929103046,0,-0.0476124097384893,0,-0.162393929103046,-0.162393929103046,-0.162393929103046,0,0.0330834600104336,0.04133785076811,0.210142630812903,0.169789567810891,0,0.128124720597641,0.174226261350496,0.126706694888706,0.113115234027982,0.129136666351663,0.0975143467586118,0.0656828797046606,0.0739531717773429,-0.162393929103046,0,-0.162393929103046,-0.162393929103046,0.300710539640039,0.381393127794296,-0.162393929103046,-0.111709362158769,-0.0433003631610106,-0.038595038629285,0,0,-0.00234658622868217,0,-0.141611275844854,0,0.0905987223074888,0.737697830005774,0.0944787464438457,0,0.0963474369784666,-0.0385618004963385,-0.162393929103046,0.00949663997997571,0,0,0,0,0,0.0749153722627563,0.1324189587654,-0.0764893654021073,-0.162393929103046,-0.162393929103046,0.0840063900848311,0.0251784759319399,0,0.0532465697337705,0,0.222666996767695,0.170416681718116,0.119410670996448,0,-0.135821536356332,-0.0758460404951989,-0.0961104090042053,0.0650059127791652,0.017264509327962,-0.0546525651713407,0,0,0.243592654496406,-0.0938849237393062,0.187528480504978,0,-0.150378125650983,0,-0.125603730050162,-0.162393929103046,-0.162393929103046,-0.0564071514076381,-0.162393929103046,0.0344717237314784,0,0,0,-0.070408073947022,0,0,0,-0.0393730925735226,-0.162393929103046,0,0,0,0.083896025183234,0,0.141608767394642,0.314013491230085,0.267787106371592,0.211101307148408,0,-0.0524679485323439,-0.162393929103046,0,-0.0129149862949883,0,0,-0.0170847797419796,0,0,-0.00849185311472606,0.112883690991555,0,-0.0194317713553152,-0.0209920196109235,0.00418643255034987,-0.162393929103046,-0.0753277153464246,-0.0588838597537956,0,0,-0.162393929103046,-0.0268468281843887,-0.00744171081642109,0.0124831328301656,0.479923267681963,0.575413182873649,0.647125944391591,0.846019093523371,0.522390165093248,0.558537927671205,0.700900678698632,0.284963337657409,0.372806586713801,0.407098602473158,0.118469409704556,0.0924077741243942,0.0172155393357952,0.00577182700981199,0,0.190760324464606,0.159715578577694,0.081359932135904,0.12651129443191,0.0978461107777356,0.153932964314976,0.20316600600278,0.124604525795899,0.194900547653235,0.127110663945833,0.223012321710536,0.109837974171443,0.177503960193396,0.260580401852919,0.112501022193427,0.144436165827364,0.185379913858661,0.240247714376764,0.192908123833104,0.10799917315244,0.178311376624504,0.119693167933637,0.202222450730007,0.148421355017489,0.193442483447008,0.100162785018571,0.201677520895557,0.258703712309396,0.167021846141953,0.0859782249915036,0.300865434577911,0.17399736139225,0.154489209976057,0.0427505991522656,-0.00367484724734304,-0.0599047767127851
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
}}
}}

Revision as of 13:19, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr13:24373093..24373146,-p3@Lrrc16a
Mm9::chr13:24373161..24373194,-p4@Lrrc16a
Mm9::chr6:8898570..8898602,+p4@Nxph1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:2832&oldid=2152118"