Personal tools

MCL coexpression mm9:1894: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
|coexpression_dpi_cluster_scores_mean=0.986300994286618,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.086814448213665,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,0.157224399872437,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.0441470650764695,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,0.082027516103307,0.766861279190099,0.480005448233798,0.492505393674915,0.42303753934134,0.49431215870266,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,0.755043766190276,0.781538975297806,0.382560153709374,0.26683880947696,0.093616343485834,0.118585533332133,0.066937626793766,-0.010836572555308,0.628246200321461,0.66641239219521,0.930752438214395,0.850954252863006,0.791013046353419,1.08692142508673,1.22227882728399,0.888222731956875,0.813534596305651,0.6780618536928,0.358214265914181,0.512947993310507,0.486124108928722,0.713722221690581,0.815823429613114,0.773877639817862,0.521921415980921,0.572604795592781,0.472755354048698,1.28710179475299,1.43132368350165,1.12612904884797,0.100991569210615,0.2506429037529,0.0180640257446068,0.195994728571967,-0.106833486346945,0.0180474847966858,-0.0164226382358261,-0.106833486346945,0.0912021379631465,-0.0897470951921735,-0.106833486346945,-0.0487955156914505,1.25209860881389,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,0.0367624304480316,-0.106833486346945,0.0220273883152194,0.237864395076121,0.30474858132777,0.216449028676074,0.368634157675349,0.16085157233997,0.000269551943011575,-0.106833486346945,0.0049437157681124,-0.106833486346945,-0.000624316102260353,-0.0380998006076015,-0.0639109940027763,-0.106833486346945,0.225533041580479,0.322989403358689,-0.082133020944709,-0.106833486346945,-0.106833486346945,-0.106833486346945,0.396989829629935,0.287112739305819,0.940228005885662,0.382088340686523,0.342513478221022,0.541332352508393,0.479091894601694,-0.0096143657881964,-0.0208331908804001,-0.106833486346945,-0.0860975031594535,0.100783157275482,0.155398812660177,0.225629036886946,0.370092678154315,0.627869295361653,0.771437306552572,0.81273648418742,0.0237231195199535,-0.0679132608026735,-0.106833486346945,0.00616032078347795,-0.0243274950884627,-0.014338534830683,0.0156390203654221,0.0145195413076253,0.016294643995443,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.0225870283483556,-0.0182855079186069,-0.034493172744624,0.0563124526580503,0.130966047264697,0.134789960143511,0.0423434748485665,0.0695716193633127,0.0591877029556553,0.0445181986231357,-0.0330613063355175,-0.0568398741602512,0.0331228719570194,-0.0208407132171736,0.390274834565305,0.999245098824072,-0.106833486346945,-0.106833486346945,0.105121357897509,0.257035151841212,0.260531489893405,0.181778840548678,0.140986158574888,0.18382182862653,-0.022506818098343,0.0758226854015367,0.159108496771856,0.18468747791859,0.129101017452835,-0.03721257080177,-0.0391898497823685,-0.0704347521513345,-0.106833486346945,0.163470084927104,-0.0248876652358107,-0.0201519697952596,0.0236937405979785,-0.0216080477221629,0.0191912990676308,0.0244211002232213,0.0542376583117115,0.0115147003553481,0.028617127227165,-0.106833486346945,-0.0243652490703049,-0.0848116860495485,-0.0466721411794326,-0.083375042581521,-0.045216377837904,-0.0574863084642522,-0.0167479298567326,0.0095839615093909,0.121466412979089,0.077408575567943,0.0880418818627295,0.130207995166577,0.136262445306344,0.182424561671812,-0.106833486346945,0.167620241871172,-0.0093414871749004,0.003323460969608,-0.0114129862980681,0.0168148042292738,-0.0105096073601814,-0.0226784387335589,-0.04373093789036,-0.0150509912773963,-0.0767797341609287,-0.032492958961743,-0.0615116135924502,-0.0645770603811782,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,0.397151037880994,0.478117937485831,-0.106833486346945,-0.106833486346945,0.685463178074366,0.767113671706722,0.759835546425092,0.909392234830758,0.936160664030397,0.887135138129385,0.722632546594803,0.735884046974354,0.711061449831069,0.919748332340365,-0.106833486346945,0.00420333129215885,-0.0162554914143911,-0.106833486346945,-0.106833486346945,0.200313585262245,0.05530794316435,0.0816033293870015,-0.037953494292947,0.0535793200579125,0.0302614916515643,-0.0475061610054937,0.0737832129718605,-0.04719947653102,-0.0286735405586783,-0.106833486346945,-0.075021673501412,0.274849082506567,0.039923930639999,0.360064867318917,0.0368789501472248,0.284044578093561,0.343685229419202,0.15956821198639,-0.106833486346945,-0.106833486346945,0.0808147534127838,-0.0321574596008615,-0.0764493641908825,-0.0403708294344882,-0.0286449518849217,-0.0324018151472297,0.049141295964006,0.451695149803038,-0.0502812688065572,0.247888363358223,0.180161428496589,0.074898710709599,-0.020032656231796,-0.0016644457557063,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,0.0736640361840027,0.233525671557212,0.303225253267919,0.238585624790234,0.3050399665941,0.187264432697502,0.16282779722247,0.0403552852051067,-0.0936008762435552,-0.106833486346945,-0.106833486346945,-0.0632996259835882,-0.0413814712590205,-0.0518734543640335,-0.0580879905842188,-0.0898839335810423,-0.0567038831012695,-0.0160497096183975,-0.096006738069696,-0.106833486346945,-0.106833486346945,-0.106833486346945,0.0092444283781421,-0.00446296350510405,-0.0227542125759435,-0.0889525767080697,-0.0705061990066777,-0.0642107195004905,-0.0564324499274845,-0.086863430582134,-0.0844790540665428,-0.0781408409439858,-0.0967365209779308,-0.0968598640586582,-0.0948321589698518,-0.066232657971398,-0.106833486346945,-0.0975053680108583,-0.0899835018839465,0.0732098772657638,-0.072228998144856,-0.106833486346945,-0.0396028287602855,-0.106833486346945,0.502182141130185,0.676708087352185,0.663926191505534,0.588691156055312,0.386779979879929,0.362277818987162,0.573201512088912,0.37286236821807,0.306880447262873,0.263580975306004,1.08598711075408,0.723107271768577,0.761090460367916,0.470979612621023,0.642870719277142,0.496701671253924,0.530129948709471,0.558944924905139,0.366047878885014,0.486382785923413,0.583643692262535,0.511867642262397,0.618313894556359,0.578260732660276,0.550795058938019,0.536207919428396,0.454433986582108,0.652947029781234,0.518242339340885,0.485707655244236,0.595155019740408,0.577298993872916,0.545469289777333,0.526339108478594,0.584421823574976,0.568471596642585,0.53806346738862,0.54624070553874,0.587302600096995,0.43311900821018,0.487660095792347,0.480126443733895,0.451672254154503,0.596291928348057,0.458411535079062,0.44401089123722,0.392600974023109,0.38115547783018,0.247832148184074,0.230365776586225,0.186769664679651
|coexpression_dpi_cluster_scores_mean=0.986300994286618,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.086814448213665,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,0.157224399872437,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.0441470650764695,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,0.082027516103307,0.766861279190099,0.480005448233798,0.492505393674915,0.42303753934134,0.49431215870266,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,0.755043766190276,0.781538975297806,0.382560153709374,0.26683880947696,0.093616343485834,0.118585533332133,0.066937626793766,-0.010836572555308,0.628246200321461,0.66641239219521,0.930752438214395,0.850954252863006,0.791013046353419,1.08692142508673,1.22227882728399,0.888222731956875,0.813534596305651,0.6780618536928,0.358214265914181,0.512947993310507,0.486124108928722,0.713722221690581,0.815823429613114,0.773877639817862,0.521921415980921,0.572604795592781,0.472755354048698,1.28710179475299,1.43132368350165,1.12612904884797,0.100991569210615,0.2506429037529,0.0180640257446068,0.195994728571967,-0.106833486346945,0.0180474847966858,-0.0164226382358261,-0.106833486346945,0.0912021379631465,-0.0897470951921735,-0.106833486346945,-0.0487955156914505,1.25209860881389,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,0.0367624304480316,-0.106833486346945,0.0220273883152194,0.237864395076121,0.30474858132777,0.216449028676074,0.368634157675349,0.16085157233997,0.000269551943011575,-0.106833486346945,0.0049437157681124,-0.106833486346945,-0.000624316102260353,-0.0380998006076015,-0.0639109940027763,-0.106833486346945,0.225533041580479,0.322989403358689,-0.082133020944709,-0.106833486346945,-0.106833486346945,-0.106833486346945,0.396989829629935,0.287112739305819,0.940228005885662,0.382088340686523,0.342513478221022,0.541332352508393,0.479091894601694,-0.0096143657881964,-0.0208331908804001,-0.106833486346945,-0.0860975031594535,0.100783157275482,0.155398812660177,0.225629036886946,0.370092678154315,0.627869295361653,0.771437306552572,0.81273648418742,0.0237231195199535,-0.0679132608026735,-0.106833486346945,0.00616032078347795,-0.0243274950884627,-0.014338534830683,0.0156390203654221,0.0145195413076253,0.016294643995443,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.0225870283483556,-0.0182855079186069,-0.034493172744624,0.0563124526580503,0.130966047264697,0.134789960143511,0.0423434748485665,0.0695716193633127,0.0591877029556553,0.0445181986231357,-0.0330613063355175,-0.0568398741602512,0.0331228719570194,-0.0208407132171736,0.390274834565305,0.999245098824072,-0.106833486346945,-0.106833486346945,0.105121357897509,0.257035151841212,0.260531489893405,0.181778840548678,0.140986158574888,0.18382182862653,-0.022506818098343,0.0758226854015367,0.159108496771856,0.18468747791859,0.129101017452835,-0.03721257080177,-0.0391898497823685,-0.0704347521513345,-0.106833486346945,0.163470084927104,-0.0248876652358107,-0.0201519697952596,0.0236937405979785,-0.0216080477221629,0.0191912990676308,0.0244211002232213,0.0542376583117115,0.0115147003553481,0.028617127227165,-0.106833486346945,-0.0243652490703049,-0.0848116860495485,-0.0466721411794326,-0.083375042581521,-0.045216377837904,-0.0574863084642522,-0.0167479298567326,0.0095839615093909,0.121466412979089,0.077408575567943,0.0880418818627295,0.130207995166577,0.136262445306344,0.182424561671812,-0.106833486346945,0.167620241871172,-0.0093414871749004,0.003323460969608,-0.0114129862980681,0.0168148042292738,-0.0105096073601814,-0.0226784387335589,-0.04373093789036,-0.0150509912773963,-0.0767797341609287,-0.032492958961743,-0.0615116135924502,-0.0645770603811782,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,0.397151037880994,0.478117937485831,-0.106833486346945,-0.106833486346945,0.685463178074366,0.767113671706722,0.759835546425092,0.909392234830758,0.936160664030397,0.887135138129385,0.722632546594803,0.735884046974354,0.711061449831069,0.919748332340365,-0.106833486346945,0.00420333129215885,-0.0162554914143911,-0.106833486346945,-0.106833486346945,0.200313585262245,0.05530794316435,0.0816033293870015,-0.037953494292947,0.0535793200579125,0.0302614916515643,-0.0475061610054937,0.0737832129718605,-0.04719947653102,-0.0286735405586783,-0.106833486346945,-0.075021673501412,0.274849082506567,0.039923930639999,0.360064867318917,0.0368789501472248,0.284044578093561,0.343685229419202,0.15956821198639,-0.106833486346945,-0.106833486346945,0.0808147534127838,-0.0321574596008615,-0.0764493641908825,-0.0403708294344882,-0.0286449518849217,-0.0324018151472297,0.049141295964006,0.451695149803038,-0.0502812688065572,0.247888363358223,0.180161428496589,0.074898710709599,-0.020032656231796,-0.0016644457557063,-0.106833486346945,-0.106833486346945,-0.106833486346945,-0.106833486346945,0.0736640361840027,0.233525671557212,0.303225253267919,0.238585624790234,0.3050399665941,0.187264432697502,0.16282779722247,0.0403552852051067,-0.0936008762435552,-0.106833486346945,-0.106833486346945,-0.0632996259835882,-0.0413814712590205,-0.0518734543640335,-0.0580879905842188,-0.0898839335810423,-0.0567038831012695,-0.0160497096183975,-0.096006738069696,-0.106833486346945,-0.106833486346945,-0.106833486346945,0.0092444283781421,-0.00446296350510405,-0.0227542125759435,-0.0889525767080697,-0.0705061990066777,-0.0642107195004905,-0.0564324499274845,-0.086863430582134,-0.0844790540665428,-0.0781408409439858,-0.0967365209779308,-0.0968598640586582,-0.0948321589698518,-0.066232657971398,-0.106833486346945,-0.0975053680108583,-0.0899835018839465,0.0732098772657638,-0.072228998144856,-0.106833486346945,-0.0396028287602855,-0.106833486346945,0.502182141130185,0.676708087352185,0.663926191505534,0.588691156055312,0.386779979879929,0.362277818987162,0.573201512088912,0.37286236821807,0.306880447262873,0.263580975306004,1.08598711075408,0.723107271768577,0.761090460367916,0.470979612621023,0.642870719277142,0.496701671253924,0.530129948709471,0.558944924905139,0.366047878885014,0.486382785923413,0.583643692262535,0.511867642262397,0.618313894556359,0.578260732660276,0.550795058938019,0.536207919428396,0.454433986582108,0.652947029781234,0.518242339340885,0.485707655244236,0.595155019740408,0.577298993872916,0.545469289777333,0.526339108478594,0.584421823574976,0.568471596642585,0.53806346738862,0.54624070553874,0.587302600096995,0.43311900821018,0.487660095792347,0.480126443733895,0.451672254154503,0.596291928348057,0.458411535079062,0.44401089123722,0.392600974023109,0.38115547783018,0.247832148184074,0.230365776586225,0.186769664679651
|coexpression_dpi_cluster_scores_median=0.738550179918837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0682179984609265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.527277708433668,0.216020467997447,0.224711822764713,0.244876909639676,0.48761332410438,0,0,0,0,0,0,0.531968038562732,0.640176951796366,0.106603619640227,0.11235573681551,0,0.080676491982253,0,0,0.444280944590509,0.471484204753203,0.812983231826278,0.77603606406679,0.582790710204604,0.87408991105503,0.960453436077711,0.684801199528156,0.638526223514819,0.476540131156946,0.322458878535173,0.388754004533344,0.396869798859579,0.409786111830807,0.592582401276985,0.512089538005672,0.398058837448642,0.512023707637857,0.329135859885856,1.05134561212009,1.17463286247088,0.881761726274521,0.0464738639419632,0.101725007271057,0,0.134805952340487,0,0,0,0,0,0,0,0,1.01845245590632,0,0,0,0,0,0,0.0288606563274916,0,0.0300545597055,0.129358133846345,0.198618775379688,0.114180477577732,0.258864028773482,0.0700056732683379,0,0,0,0,0.0325594900422539,0,0,0,0.0557624462303155,0.117268254539349,0,0,0,0,0.260622282382405,0.348332075831337,0.655619987422904,0.250441710981523,0.139139770628836,0.419901147962859,0.309652369280763,0,0.0254617646470484,0,0,0.121790622614876,0.082147305731027,0.233198941648937,0.159649286713724,0.438171934141767,0.564703889781536,0.569680874788564,0,0,0,0,0.0430367169147578,0,0,0,0,0,0,0,0,0,0,0,0.0390043003759757,0.0623063220167371,0.0453994444268803,0,0.0695559424424569,0.033080906512311,0.0330077287713024,0,0,0.0231459181175926,0,0.265091482557376,0.738868714706498,0,0,0.0762870770361686,0.225500847892606,0.178971426343264,0.113480691050742,0.0872055405749939,0.168053962823626,0,0.0662136857075299,0.151094098769148,0.127132113973315,0.110173605842676,0,0,0,0,0.0893741091821246,0,0,0,0,0.0125221904493427,0.0189450104816749,0.0491780544773,0,0,0,0,0,0.0401075634450079,0,0,0,0,0,0,0.068699362409361,0.117110611071921,0.137939088251482,0.133492705528122,0.085489078226422,0,0.0753613107413788,0.0327833179115153,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193086408031806,0.286489064868473,0,0,0.582811811266878,0.685008877396099,0.666728262342417,0.832733503997914,0.900652679701077,0.764348098643967,0.651439759639606,0.618253479410502,0.682038302031218,0.619501698743287,0,0,0,0,0,0.166012069309488,0.053256438165286,0.0375187909878671,0,0,0.01060874633217,0,0,0,0,0,0,0.160575165238512,0.0298837490006248,0.185286830672538,0.0078394658479205,0.132495872273197,0.14890250342523,0.057716207064756,0,0,0,0,0,0,0,0,0,0.304858797448228,0,0.171439865985955,0.0684219406364715,0,0,0,0,0,0,0,0.059683378352366,0.177498644392726,0.169429446367345,0.0824580172145032,0.15737368738825,0.147550511820338,0.0813205577374289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0400832080528911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35376540714707,0.595631224585866,0.517404685814234,0.433464920757434,0.300699880676714,0.244374584202533,0.524473678907995,0.325073160817734,0.162308177550168,0.203549301236579,1.00323843019094,0.588436125211821,0.598235462692375,0.258779760274981,0.441519995282079,0.299320567581128,0.322116549960309,0.342011098520076,0.120876255993453,0.303366467725811,0.329784541379065,0.280159070816815,0.335652268687055,0.312636643643253,0.281390338186417,0.424289256979882,0.213873084483777,0.46293246874216,0.261065738036311,0.257221660693471,0.370431665246032,0.36423779180816,0.3158721127804,0.254774506984191,0.372979820961824,0.321864378244973,0.315007384597113,0.282448737636239,0.322476930356715,0.483486123197057,0.302660204986252,0.186017310569498,0.204343226098226,0.391102878230016,0.237821679921406,0.224421932333266,0.12898833846516,0.150296973102913,0.108353055257316,0.122644697176553,0.0452820579159438
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
}}
}}

Revision as of 13:04, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:57504720..57504745,+p1@Fabp7
Mm9::chr10:57504766..57504779,+p3@Fabp7
Mm9::chr10:57504783..57504796,+p4@Fabp7
Mm9::chr10:57504816..57504829,+p@chr10:57504816..57504829
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:1894&oldid=2151180"