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MCL coexpression mm9:1574: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0004774;succinate-CoA ligase activity;0.03204601427747;20916!GO:0016405;CoA-ligase activity;0.0329610565951019;20916!GO:0016878;acid-thiol ligase activity;0.0329610565951019;20916!GO:0016877;ligase activity, forming carbon-sulfur bonds;0.0329610565951019;20916!GO:0006099;tricarboxylic acid cycle;0.0329610565951019;20916!GO:0046356;acetyl-CoA catabolic process;0.0329610565951019;20916!GO:0009060;aerobic respiration;0.0329610565951019;20916!GO:0009109;coenzyme catabolic process;0.0329610565951019;20916!GO:0045333;cellular respiration;0.0329610565951019;20916!GO:0051187;cofactor catabolic process;0.0329610565951019;20916!GO:0006084;acetyl-CoA metabolic process;0.0329610565951019;20916!
|gostat_on_MCL_coexpression=GO:0004774;succinate-CoA ligase activity;0.03204601427747;20916!GO:0016405;CoA-ligase activity;0.0329610565951019;20916!GO:0016878;acid-thiol ligase activity;0.0329610565951019;20916!GO:0016877;ligase activity, forming carbon-sulfur bonds;0.0329610565951019;20916!GO:0006099;tricarboxylic acid cycle;0.0329610565951019;20916!GO:0046356;acetyl-CoA catabolic process;0.0329610565951019;20916!GO:0009060;aerobic respiration;0.0329610565951019;20916!GO:0009109;coenzyme catabolic process;0.0329610565951019;20916!GO:0045333;cellular respiration;0.0329610565951019;20916!GO:0051187;cofactor catabolic process;0.0329610565951019;20916!GO:0006084;acetyl-CoA metabolic process;0.0329610565951019;20916!
}}
}}

Revision as of 12:59, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:58136797..58136859,-p1@Zfp672
Mm9::chr14:119406667..119406720,-p2@Uggt2
Mm9::chr14:73952558..73952583,+p2@Sucla2
Mm9::chr16:91619231..91619269,-p1@Dnajc28
Mm9::chr9:102528530..102528569,-p1@Cep63


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0004774succinate-CoA ligase activity0.03204601427747
GO:0016405CoA-ligase activity0.0329610565951019
GO:0016878acid-thiol ligase activity0.0329610565951019
GO:0016877ligase activity, forming carbon-sulfur bonds0.0329610565951019
GO:0006099tricarboxylic acid cycle0.0329610565951019
GO:0046356acetyl-CoA catabolic process0.0329610565951019
GO:0009060aerobic respiration0.0329610565951019
GO:0009109coenzyme catabolic process0.0329610565951019
GO:0045333cellular respiration0.0329610565951019
GO:0051187cofactor catabolic process0.0329610565951019
GO:0006084acetyl-CoA metabolic process0.0329610565951019



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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