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{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0008432;JUN kinase binding;0.0260166174162555;70834!GO:0007243;protein kinase cascade;0.0260166174162555;14674,70834!GO:0019894;kinesin binding;0.046628077004361;70834!GO:0030168;platelet activation;0.046628077004361;14674!GO:0051260;protein homooligomerization;0.046628077004361;70834!GO:0001569;patterning of blood vessels;0.046628077004361;14674!GO:0051259;protein oligomerization;0.046628077004361;70834!GO:0005834;heterotrimeric G-protein complex;0.046628077004361;14674!GO:0000187;activation of MAPK activity;0.046628077004361;70834!GO:0009880;embryonic pattern specification;0.046628077004361;14674!GO:0043406;positive regulation of MAP kinase activity;0.046628077004361;70834!GO:0022603;regulation of anatomical structure morphogenesis;0.046628077004361;14674!GO:0008360;regulation of cell shape;0.046628077004361;14674!GO:0022604;regulation of cell morphogenesis;0.046628077004361;14674!GO:0019901;protein kinase binding;0.046628077004361;70834!GO:0019897;extrinsic to plasma membrane;0.046628077004361;14674!GO:0019900;kinase binding;0.046628077004361;70834!GO:0007242;intracellular signaling cascade;0.046628077004361;14674,70834!GO:0007596;blood coagulation;0.046628077004361;14674!GO:0030334;regulation of cell migration;0.046628077004361;14674!GO:0007599;hemostasis;0.046628077004361;14674!GO:0050817;coagulation;0.046628077004361;14674!GO:0048754;branching morphogenesis of a tube;0.046628077004361;14674!GO:0051270;regulation of cell motility;0.046628077004361;14674!GO:0043405;regulation of MAP kinase activity;0.046628077004361;70834!GO:0001763;morphogenesis of a branching structure;0.046628077004361;14674!GO:0040012;regulation of locomotion;0.046628077004361;14674!GO:0019898;extrinsic to membrane;0.0482174233874129;14674!GO:0050878;regulation of body fluid levels;0.0482174233874129;14674!}}
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0008432;JUN kinase binding;0.0260166174162555;70834!GO:0007243;protein kinase cascade;0.0260166174162555;14674,70834!GO:0019894;kinesin binding;0.046628077004361;70834!GO:0030168;platelet activation;0.046628077004361;14674!GO:0051260;protein homooligomerization;0.046628077004361;70834!GO:0001569;patterning of blood vessels;0.046628077004361;14674!GO:0051259;protein oligomerization;0.046628077004361;70834!GO:0005834;heterotrimeric G-protein complex;0.046628077004361;14674!GO:0000187;activation of MAPK activity;0.046628077004361;70834!GO:0009880;embryonic pattern specification;0.046628077004361;14674!GO:0043406;positive regulation of MAP kinase activity;0.046628077004361;70834!GO:0022603;regulation of anatomical structure morphogenesis;0.046628077004361;14674!GO:0008360;regulation of cell shape;0.046628077004361;14674!GO:0022604;regulation of cell morphogenesis;0.046628077004361;14674!GO:0019901;protein kinase binding;0.046628077004361;70834!GO:0019897;extrinsic to plasma membrane;0.046628077004361;14674!GO:0019900;kinase binding;0.046628077004361;70834!GO:0007242;intracellular signaling cascade;0.046628077004361;14674,70834!GO:0007596;blood coagulation;0.046628077004361;14674!GO:0030334;regulation of cell migration;0.046628077004361;14674!GO:0007599;hemostasis;0.046628077004361;14674!GO:0050817;coagulation;0.046628077004361;14674!GO:0048754;branching morphogenesis of a tube;0.046628077004361;14674!GO:0051270;regulation of cell motility;0.046628077004361;14674!GO:0043405;regulation of MAP kinase activity;0.046628077004361;70834!GO:0001763;morphogenesis of a branching structure;0.046628077004361;14674!GO:0040012;regulation of locomotion;0.046628077004361;14674!GO:0019898;extrinsic to membrane;0.0482174233874129;14674!GO:0050878;regulation of body fluid levels;0.0482174233874129;14674!
}}

Revision as of 11:25, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:109224085..109224168,+p1@Gna13
Mm9::chr11:109224169..109224182,+p4@Gna13
Mm9::chr11:109224197..109224221,+p3@Gna13
Mm9::chr11:93857396..93857413,+p1@Spag9
Mm9::chr8:125566132..125566143,-p3@Ankrd11


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0008432JUN kinase binding0.0260166174162555
GO:0007243protein kinase cascade0.0260166174162555
GO:0019894kinesin binding0.046628077004361
GO:0030168platelet activation0.046628077004361
GO:0051260protein homooligomerization0.046628077004361
GO:0001569patterning of blood vessels0.046628077004361
GO:0051259protein oligomerization0.046628077004361
GO:0005834heterotrimeric G-protein complex0.046628077004361
GO:0000187activation of MAPK activity0.046628077004361
GO:0009880embryonic pattern specification0.046628077004361
GO:0043406positive regulation of MAP kinase activity0.046628077004361
GO:0022603regulation of anatomical structure morphogenesis0.046628077004361
GO:0008360regulation of cell shape0.046628077004361
GO:0022604regulation of cell morphogenesis0.046628077004361
GO:0019901protein kinase binding0.046628077004361
GO:0019897extrinsic to plasma membrane0.046628077004361
GO:0019900kinase binding0.046628077004361
GO:0007242intracellular signaling cascade0.046628077004361
GO:0007596blood coagulation0.046628077004361
GO:0030334regulation of cell migration0.046628077004361
GO:0007599hemostasis0.046628077004361
GO:0050817coagulation0.046628077004361
GO:0048754branching morphogenesis of a tube0.046628077004361
GO:0051270regulation of cell motility0.046628077004361
GO:0043405regulation of MAP kinase activity0.046628077004361
GO:0001763morphogenesis of a branching structure0.046628077004361
GO:0040012regulation of locomotion0.046628077004361
GO:0019898extrinsic to membrane0.0482174233874129
GO:0050878regulation of body fluid levels0.0482174233874129



Relative expression of the co-expression cluster over median <br>Analyst:



"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}