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{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0017067;tyrosine-ester sulfotransferase activity;0.0180732773037338;53315!GO:0004062;aryl sulfotransferase activity;0.0180732773037338;53315!GO:0006791;sulfur utilization;0.0180732773037338;53315!GO:0000103;sulfate assimilation;0.0180732773037338;53315!GO:0008508;bile acid:sodium symporter activity;0.0240871425889528;241877!GO:0015125;bile acid transmembrane transporter activity;0.0240871425889528;241877!GO:0006805;xenobiotic metabolic process;0.0288792426108508;622402!GO:0009410;response to xenobiotic stimulus;0.0288792426108508;622402!GO:0004033;aldo-keto reductase activity;0.0288792426108508;622402!GO:0008028;monocarboxylic acid transmembrane transporter activity;0.0288792426108508;241877!GO:0005343;organic acid:sodium symporter activity;0.0311662075486136;241877!}}
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0017067;tyrosine-ester sulfotransferase activity;0.0180732773037338;53315!GO:0004062;aryl sulfotransferase activity;0.0180732773037338;53315!GO:0006791;sulfur utilization;0.0180732773037338;53315!GO:0000103;sulfate assimilation;0.0180732773037338;53315!GO:0008508;bile acid:sodium symporter activity;0.0240871425889528;241877!GO:0015125;bile acid transmembrane transporter activity;0.0240871425889528;241877!GO:0006805;xenobiotic metabolic process;0.0288792426108508;622402!GO:0009410;response to xenobiotic stimulus;0.0288792426108508;622402!GO:0004033;aldo-keto reductase activity;0.0288792426108508;622402!GO:0008028;monocarboxylic acid transmembrane transporter activity;0.0288792426108508;241877!GO:0005343;organic acid:sodium symporter activity;0.0311662075486136;241877!
}}

Revision as of 11:22, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr13:4278636..4278655,-p1@Akr1c12
Mm9::chr3:10335409..10335441,-p@chr3:10335409..10335441
-
Mm9::chr4:106987004..106987029,+p2@Yipf1
Mm9::chr5:87997915..87997933,-p1@Sult1d1
Mm9::chr5:87997938..87997949,-p5@Sult1d1
Mm9::chr7:26262616..26262621,-p3@Ceacam1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0017067tyrosine-ester sulfotransferase activity0.0180732773037338
GO:0004062aryl sulfotransferase activity0.0180732773037338
GO:0006791sulfur utilization0.0180732773037338
GO:0000103sulfate assimilation0.0180732773037338
GO:0008508bile acid:sodium symporter activity0.0240871425889528
GO:0015125bile acid transmembrane transporter activity0.0240871425889528
GO:0006805xenobiotic metabolic process0.0288792426108508
GO:0009410response to xenobiotic stimulus0.0288792426108508
GO:0004033aldo-keto reductase activity0.0288792426108508
GO:0008028monocarboxylic acid transmembrane transporter activity0.0288792426108508
GO:0005343organic acid:sodium symporter activity0.0311662075486136



Relative expression of the co-expression cluster over median <br>Analyst:


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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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