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Coexpression cluster:C91: Difference between revisions

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|full_id=C91_Fibroblast_Smooth_mesenchymal_Mesothelial_Small_Preadipocyte_Hair
|full_id=C91_Fibroblast_Smooth_mesenchymal_Mesothelial_Small_Preadipocyte_Hair
|id=C91
|id=C91
|ontology_enrichment_celltype=CL:0000055!7.13e-33!180;CL:0000222!8.06e-24!119;CL:0000144!4.54e-22!625;CL:0000057!6.21e-22!75;CL:0000680!5.14e-21!57;CL:0000056!5.14e-21!57;CL:0000355!5.14e-21!57;CL:0002371!2.26e-20!591;CL:0000187!1.57e-19!54;CL:0000192!2.06e-19!42;CL:0000514!2.06e-19!42;CL:0000183!5.56e-18!59;CL:0000393!6.19e-18!60;CL:0000211!6.19e-18!60;CL:0000359!2.53e-17!32;CL:0000220!2.62e-17!246;CL:0002321!2.04e-16!248;CL:0000548!1.01e-15!679;CL:0000004!1.01e-15!679;CL:0000255!1.01e-15!679;CL:0000012!4.04e-15!682;CL:0000048!4.06e-12!430;CL:0000723!4.76e-12!436;CL:0000034!3.93e-10!444;CL:0000003!4.06e-10!722;CL:0002620!1.12e-09!23;CL:0002494!9.53e-08!16;CL:0002539!4.54e-07!10;CL:0000076!9.82e-07!62
|ontology_enrichment_celltype=CL:1000306!4.00e-50!4;CL:0002547!4.00e-50!4;CL:0002589!9.18e-26!2;CL:0000359!3.16e-07!32
|ontology_enrichment_disease=DOID:2394!7.10e-08!14
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000914!3.07e-23!83;UBERON:0002329!3.07e-23!83;UBERON:0003077!3.07e-23!83;UBERON:0003059!3.07e-23!83;UBERON:0007282!3.07e-23!83;UBERON:0009618!3.07e-23!83;UBERON:0007285!3.07e-23!83;UBERON:0002049!9.99e-22!79;UBERON:0007798!9.99e-22!79;UBERON:0000486!3.92e-21!82;UBERON:0004290!9.49e-21!70;UBERON:0004872!2.41e-20!84;UBERON:0000055!1.51e-19!69;UBERON:0001637!2.47e-19!42;UBERON:0003509!2.47e-19!42;UBERON:0004572!2.47e-19!42;UBERON:0001981!6.99e-19!60;UBERON:0007500!6.99e-19!60;UBERON:0004537!6.99e-19!60;UBERON:0006965!6.99e-19!60;UBERON:0001134!9.90e-19!61;UBERON:0002036!9.90e-19!61;UBERON:0003082!9.90e-19!61;UBERON:0002385!9.20e-18!63;UBERON:0001015!9.20e-18!63;UBERON:0000383!9.20e-18!63;UBERON:0004535!3.88e-16!110;UBERON:0004573!5.87e-16!33;UBERON:0004571!5.87e-16!33;UBERON:0005256!7.24e-16!143;UBERON:0001009!1.92e-15!113;UBERON:0003914!3.30e-15!118;UBERON:0000119!4.70e-14!312;UBERON:0000490!5.69e-14!138;UBERON:0000483!1.01e-13!309;UBERON:0000475!1.65e-11!365;UBERON:0000467!1.94e-11!625;UBERON:0000480!3.23e-11!626;UBERON:0000468!1.96e-10!659;UBERON:0002100!6.90e-10!216;UBERON:0002199!1.21e-09!45;UBERON:0002416!1.21e-09!45;UBERON:0000947!1.30e-09!21;UBERON:0010191!1.30e-09!21;UBERON:0004111!3.39e-09!241;UBERON:0002097!5.89e-09!40;UBERON:0003102!1.38e-08!95;UBERON:0002204!6.98e-08!167;UBERON:0000025!7.86e-08!194;UBERON:0000477!1.10e-07!286;UBERON:0000948!3.25e-07!24;UBERON:0005498!3.25e-07!24;UBERON:0004140!3.25e-07!24;UBERON:0009881!3.25e-07!24;UBERON:0004141!3.25e-07!24;UBERON:0003084!3.25e-07!24;UBERON:0007005!3.25e-07!24;UBERON:0004139!3.25e-07!24;UBERON:0004291!3.25e-07!24;UBERON:0004237!4.54e-07!10;UBERON:0004695!4.54e-07!10;UBERON:0002111!4.54e-07!10;UBERON:0004178!4.54e-07!10
|ontology_enrichment_uberon=UBERON:0000415!4.00e-50!4;UBERON:0007240!4.00e-50!4;UBERON:0005742!4.00e-50!4;UBERON:0005734!4.00e-50!4;UBERON:0004664!4.00e-50!4;UBERON:0004663!4.00e-50!4;UBERON:0004797!3.16e-29!7;UBERON:0001529!9.18e-26!2;UBERON:0007204!9.18e-26!2;UBERON:0004573!9.87e-25!33;UBERON:0004571!9.87e-25!33;UBERON:0000947!4.43e-22!21;UBERON:0010191!4.43e-22!21;UBERON:0001637!1.19e-19!42;UBERON:0003509!1.19e-19!42;UBERON:0004572!1.19e-19!42;UBERON:0000060!1.44e-17!12;UBERON:0007500!2.92e-14!59;UBERON:0001981!2.92e-14!59;UBERON:0004537!2.92e-14!59;UBERON:0006965!2.92e-14!59;UBERON:0000055!1.71e-12!68;UBERON:0002049!5.31e-11!78;UBERON:0007798!5.31e-11!78;UBERON:0004872!2.17e-10!83;UBERON:0004535!4.22e-08!109;UBERON:0001009!6.64e-08!112;UBERON:0003914!1.34e-07!117
|tf_chipseq_enrich=CEBPB#1051;65:2.53982644940497:4.68082420165369e-13:6.84678709799033e-11!EP300#2033;80:2.6564477357738:1.35062987529171e-17:2.87874354174676e-15!ESR1#2099;15:2.26239730118783:0.00296698017302656:0.0158144555624539!FOS#2353;68:2.99931843629814:2.64408983603706e-17:5.4899820752659e-15!GATA2#2624;75:4.68563666674779:3.6698247966208e-31:1.5392483210212e-28!GATA3#2625;19:2.53673436660252:0.00021262071481131:0.00245152294481988!JUN#3725;77:4.72297964612695:2.50618264375689e-32:1.10908139462426e-29!JUND#3727;67:2.29726707894784:1.75325451469847e-11:2.12669161742849e-09!NR3C1#2908;32:2.34870954214479:6.18715449940844e-06:0.000182846697443044!PRDM1#639;6:3.87738105227826:0.00492994178178811:0.0230391171356796!SIRT6#51548;5:3.76564715661826:0.0112429329737536:0.041275333128721!STAT3#6774;60:3.09396029328066:9.81881038044625e-16:1.85102299155853e-13
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}}
}}

Revision as of 16:51, 19 October 2012


Full id: C91_Fibroblast_Smooth_mesenchymal_Mesothelial_Small_Preadipocyte_Hair



Phase1 CAGE Peaks

Hg19::chr10:14083240..14083244,-p@chr10:14083240..14083244
-
Hg19::chr10:54248451..54248453,-p@chr10:54248451..54248453
-
Hg19::chr11:10349108..10349113,+p@chr11:10349108..10349113
+
Hg19::chr11:12107935..12107951,-p@chr11:12107935..12107951
-
Hg19::chr11:12108136..12108151,+p4@ENST00000527997
Hg19::chr11:28779323..28779364,-p@chr11:28779323..28779364
-
Hg19::chr11:28779555..28779601,+p@chr11:28779555..28779601
+
Hg19::chr11:28858122..28858128,+p@chr11:28858122..28858128
+
Hg19::chr11:28858441..28858464,+p@chr11:28858441..28858464
+
Hg19::chr11:29207409..29207435,+p@chr11:29207409..29207435
+
Hg19::chr11:29328382..29328391,+p@chr11:29328382..29328391
+
Hg19::chr11:29331768..29331769,-p@chr11:29331768..29331769
-
Hg19::chr11:36796505..36796529,+p@chr11:36796505..36796529
+
Hg19::chr11:5385751..5385762,+p@chr11:5385751..5385762
+
Hg19::chr11:9588526..9588534,+p@chr11:9588526..9588534
+
Hg19::chr12:16505568..16505582,-p@chr12:16505568..16505582
-
Hg19::chr12:65959415..65959422,-p@chr12:65959415..65959422
-
Hg19::chr12:65959975..65959997,+p@chr12:65959975..65959997
+
Hg19::chr12:66009286..66009299,+p@chr12:66009286..66009299
+
Hg19::chr12:71054737..71054749,-p@chr12:71054737..71054749
-
Hg19::chr12:76056397..76056405,-p@chr12:76056397..76056405
-
Hg19::chr12:76108116..76108123,-p@chr12:76108116..76108123
-
Hg19::chr12:76108149..76108159,-p@chr12:76108149..76108159
-
Hg19::chr12:76175230..76175237,-p@chr12:76175230..76175237
-
Hg19::chr12:76175239..76175250,-p@chr12:76175239..76175250
-
Hg19::chr12:76219575..76219590,-p@chr12:76219575..76219590
-
Hg19::chr12:76270706..76270708,-p@chr12:76270706..76270708
-
Hg19::chr12:88782727..88782732,-p@chr12:88782727..88782732
-
Hg19::chr12:96199635..96199641,-p@chr12:96199635..96199641
-
Hg19::chr13:38275506..38275512,-p@chr13:38275506..38275512
-
Hg19::chr13:84979566..84979573,-p@chr13:84979566..84979573
-
Hg19::chr14:23158454..23158473,-p@chr14:23158454..23158473
-
Hg19::chr14:68614207..68614210,-p@chr14:68614207..68614210
-
Hg19::chr14:79436226..79436229,+p@chr14:79436226..79436229
+
Hg19::chr15:32975140..32975144,+p@chr15:32975140..32975144
+
Hg19::chr15:33066256..33066281,-p@chr15:33066256..33066281
-
Hg19::chr15:33144134..33144145,+p@chr15:33144134..33144145
+
Hg19::chr15:33212102..33212104,-p@chr15:33212102..33212104
-
Hg19::chr15:39087787..39087794,-p@chr15:39087787..39087794
-
Hg19::chr15:39087815..39087824,-p@chr15:39087815..39087824
-
Hg19::chr15:39288691..39288698,+p@chr15:39288691..39288698
+
Hg19::chr15:39420495..39420503,+p@chr15:39420495..39420503
+
Hg19::chr15:39420650..39420666,+p@chr15:39420650..39420666
+
Hg19::chr15:39765414..39765425,+p1@ENST00000560552
Hg19::chr15:39765435..39765438,+p2@ENST00000560552
Hg19::chr15:88212656..88212660,+p@chr15:88212656..88212660
+
Hg19::chr16:88337786..88337798,-p@chr16:88337786..88337798
-
Hg19::chr17:39109341..39109347,+p@chr17:39109341..39109347
+
Hg19::chr17:57841314..57841323,-p@chr17:57841314..57841323
-
Hg19::chr17:62679110..62679113,+p@chr17:62679110..62679113
+
Hg19::chr17:67057203..67057228,-p4@ABCA9
Hg19::chr18:20143107..20143124,-p@chr18:20143107..20143124
-
Hg19::chr18:55487026..55487030,-p@chr18:55487026..55487030
-
Hg19::chr19:43584268..43584275,+p@chr19:43584268..43584275
+
Hg19::chr1:115732772..115732797,-p@chr1:115732772..115732797
-
Hg19::chr1:115733003..115733008,+p@chr1:115733003..115733008
+
Hg19::chr1:115801241..115801245,+p@chr1:115801241..115801245
+
Hg19::chr1:115873480..115873484,+p@chr1:115873480..115873484
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Hg19::chr1:160881636..160881640,+p@chr1:160881636..160881640
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Hg19::chr1:172961144..172961147,+p@chr1:172961144..172961147
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Hg19::chr1:183204105..183204116,+p@chr1:183204105..183204116
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Hg19::chr1:199267284..199267291,+p@chr1:199267284..199267291
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Hg19::chr1:215157211..215157225,+p@chr1:215157211..215157225
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Hg19::chr1:215157270..215157279,+p@chr1:215157270..215157279
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Hg19::chr1:219514172..219514177,-p@chr1:219514172..219514177
-
Hg19::chr1:226851965..226851967,+p@chr1:226851965..226851967
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Hg19::chr1:238811500..238811513,+p@chr1:238811500..238811513
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Hg19::chr1:246579848..246579858,-p@chr1:246579848..246579858
-
Hg19::chr1:86073371..86073381,+p@chr1:86073371..86073381
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Hg19::chr1:86078791..86078795,+p@chr1:86078791..86078795
+
Hg19::chr20:7717290..7717300,+p@chr20:7717290..7717300
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Hg19::chr20:7741649..7741652,+p@chr20:7741649..7741652
+
Hg19::chr20:7755823..7755848,-p@chr20:7755823..7755848
-
Hg19::chr21:28945118..28945164,-p@chr21:28945118..28945164
-
Hg19::chr21:28955184..28955188,+p@chr21:28955184..28955188
+
Hg19::chr21:30000326..30000330,+p@chr21:30000326..30000330
+
Hg19::chr2:151537893..151537898,-p@chr2:151537893..151537898
-
Hg19::chr2:159992786..159992791,+p20@TANC1
Hg19::chr2:162927693..162927706,-p@chr2:162927693..162927706
-
Hg19::chr2:162929164..162929167,+p@chr2:162929164..162929167
+
Hg19::chr2:162929288..162929298,+p5@ENST00000418335
Hg19::chr2:162943708..162943739,+p@chr2:162943708..162943739
+
Hg19::chr2:162949963..162949969,+p1@ENST00000432251
Hg19::chr2:18807662..18807665,-p@chr2:18807662..18807665
-
Hg19::chr2:196478728..196478750,-p@chr2:196478728..196478750
-
Hg19::chr2:216301308..216301324,+p@chr2:216301308..216301324
+
Hg19::chr2:216578345..216578377,+p@chr2:216578345..216578377
+
Hg19::chr2:216588131..216588134,+p@chr2:216588131..216588134
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Hg19::chr2:216623643..216623668,+p@chr2:216623643..216623668
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Hg19::chr2:216623697..216623706,+p@chr2:216623697..216623706
+
Hg19::chr2:216638374..216638390,-p@chr2:216638374..216638390
-
Hg19::chr2:228682897..228682916,-p@chr2:228682897..228682916
-
Hg19::chr2:37938667..37938670,-p@chr2:37938667..37938670
-
Hg19::chr2:38055275..38055310,-p@chr2:38055275..38055310
-
Hg19::chr2:54199052..54199059,-p@chr2:54199052..54199059
-
Hg19::chr2:55327810..55327812,-p@chr2:55327810..55327812
-
Hg19::chr2:56089534..56089541,-p@chr2:56089534..56089541
-
Hg19::chr2:56220069..56220077,+p@chr2:56220069..56220077
+
Hg19::chr2:67730504..67730512,+p@chr2:67730504..67730512
+
Hg19::chr2:72789317..72789322,+p@chr2:72789317..72789322
+
Hg19::chr3:101899338..101899342,+p@chr3:101899338..101899342
+
Hg19::chr3:106464246..106464276,-p@chr3:106464246..106464276
-
Hg19::chr3:111480481..111480482,+p@chr3:111480481..111480482
+
Hg19::chr3:111522000..111522033,-p@chr3:111522000..111522033
-
Hg19::chr3:111584345..111584377,+p@chr3:111584345..111584377
+
Hg19::chr3:112359324..112359338,+p@chr3:112359324..112359338
+
Hg19::chr3:134046037..134046050,+p@chr3:134046037..134046050
+
Hg19::chr3:141105560..141105572,-p@chr3:141105560..141105572
-
Hg19::chr3:141105574..141105581,-p@chr3:141105574..141105581
-
Hg19::chr3:141105589..141105621,-p@chr3:141105589..141105621
-
Hg19::chr3:156207749..156207761,+p@chr3:156207749..156207761
+
Hg19::chr3:156437182..156437193,+p@chr3:156437182..156437193
+
Hg19::chr3:156877038..156877058,-p35@CCNL1
Hg19::chr3:156878186..156878199,-p71@CCNL1
Hg19::chr3:156878415..156878435,-p9@CCNL1
Hg19::chr3:170430340..170430344,+p@chr3:170430340..170430344
+
Hg19::chr3:170459091..170459101,-p4@ENST00000473110
Hg19::chr3:170459106..170459125,-p1@ENST00000473110
Hg19::chr3:170463391..170463423,+p@chr3:170463391..170463423
+
Hg19::chr3:170464281..170464285,+p@chr3:170464281..170464285
+
Hg19::chr3:170469063..170469069,+p@chr3:170469063..170469069
+
Hg19::chr3:29800057..29800074,+p@chr3:29800057..29800074
+
Hg19::chr3:71222427..71222440,+p@chr3:71222427..71222440
+
Hg19::chr4:10182011..10182023,-p@chr4:10182011..10182023
-
Hg19::chr4:114355620..114355627,+p@chr4:114355620..114355627
+
Hg19::chr4:115193252..115193270,-p@chr4:115193252..115193270
-
Hg19::chr4:120133504..120133520,-p1@AK098126
Hg19::chr4:123686305..123686329,+p@chr4:123686305..123686329
+
Hg19::chr4:13890014..13890023,+p@chr4:13890014..13890023
+
Hg19::chr4:15692343..15692349,+p@chr4:15692343..15692349
+
Hg19::chr4:181844926..181844937,+p@chr4:181844926..181844937
+
Hg19::chr4:38143865..38143904,-p@chr4:38143865..38143904
-
Hg19::chr4:38147484..38147500,-p@chr4:38147484..38147500
-
Hg19::chr4:47533429..47533432,-p@chr4:47533429..47533432
-
Hg19::chr4:67281053..67281056,-p@chr4:67281053..67281056
-
Hg19::chr4:67292646..67292650,-p@chr4:67292646..67292650
-
Hg19::chr4:67298860..67298867,-p@chr4:67298860..67298867
-
Hg19::chr4:67300735..67300776,-p@chr4:67300735..67300776
-
Hg19::chr4:67430351..67430354,-p@chr4:67430351..67430354
-
Hg19::chr4:67441054..67441061,+p@chr4:67441054..67441061
+
Hg19::chr4:77703570..77703577,+p@chr4:77703570..77703577
+
Hg19::chr4:81159520..81159523,+p@chr4:81159520..81159523
+
Hg19::chr4:88930306..88930310,+p@chr4:88930306..88930310
+
Hg19::chr4:99934696..99934700,-p@chr4:99934696..99934700
-
Hg19::chr5:111342511..111342533,-p@chr5:111342511..111342533
-
Hg19::chr5:14109718..14109721,+p@chr5:14109718..14109721
+
Hg19::chr5:144875561..144875565,+p@chr5:144875561..144875565
+
Hg19::chr5:151066253..151066272,-p@chr5:151066253..151066272
-
Hg19::chr5:163602194..163602199,-p@chr5:163602194..163602199
-
Hg19::chr5:163787736..163787752,-p@chr5:163787736..163787752
-
Hg19::chr5:37772283..37772287,+p@chr5:37772283..37772287
+
Hg19::chr5:52660072..52660094,-p@chr5:52660072..52660094
-
Hg19::chr5:53358788..53358795,-p@chr5:53358788..53358795
-
Hg19::chr5:97750593..97750597,-p@chr5:97750593..97750597
-
Hg19::chr6:121837348..121837351,+p@chr6:121837348..121837351
+
Hg19::chr6:121843766..121843798,+p@chr6:121843766..121843798
+
Hg19::chr6:135231685..135231692,+p@chr6:135231685..135231692
+
Hg19::chr6:136397717..136397720,-p@chr6:136397717..136397720
-
Hg19::chr6:140070083..140070090,+p@chr6:140070083..140070090
+
Hg19::chr6:57128349..57128352,+p@chr6:57128349..57128352
+
Hg19::chr7:119692917..119692924,-p@chr7:119692917..119692924
-
Hg19::chr7:120724895..120724911,-p@chr7:120724895..120724911
-
Hg19::chr7:139295794..139295798,+p@chr7:139295794..139295798
+
Hg19::chr7:22629318..22629324,+p1@ENST00000439823
Hg19::chr7:22687639..22687644,+p@chr7:22687639..22687644
+
Hg19::chr7:32133423..32133424,+p@chr7:32133423..32133424
+
Hg19::chr7:34019832..34019836,+p@chr7:34019832..34019836
+
Hg19::chr7:41956273..41956284,-p@chr7:41956273..41956284
-
Hg19::chr7:47835322..47835327,-p@chr7:47835322..47835327
-
Hg19::chr7:84349905..84349926,-p@chr7:84349905..84349926
-
Hg19::chr7:84349931..84349955,-p@chr7:84349931..84349955
-
Hg19::chr7:84807360..84807364,+p@chr7:84807360..84807364
+
Hg19::chr7:93928562..93928567,+p@chr7:93928562..93928567
+
Hg19::chr8:107870700..107870705,-p@chr8:107870700..107870705
-
Hg19::chr8:11373722..11373763,+p@chr8:11373722..11373763
+
Hg19::chr8:119452230..119452235,+p@chr8:119452230..119452235
+
Hg19::chr8:123139671..123139687,+p@chr8:123139671..123139687
+
Hg19::chr8:123141284..123141287,-p@chr8:123141284..123141287
-
Hg19::chr8:123376383..123376386,+p@chr8:123376383..123376386
+
Hg19::chr8:123446690..123446696,+p@chr8:123446690..123446696
+
Hg19::chr8:125193673..125193689,-p@chr8:125193673..125193689
-
Hg19::chr8:129188825..129188841,-p@chr8:129188825..129188841
-
Hg19::chr8:129522281..129522284,-p@chr8:129522281..129522284
-
Hg19::chr8:129527052..129527059,-p@chr8:129527052..129527059
-
Hg19::chr8:13230011..13230026,-p@chr8:13230011..13230026
-
Hg19::chr8:23210765..23210805,+p@chr8:23210765..23210805
+
Hg19::chr8:23213977..23213984,+p@chr8:23213977..23213984
+
Hg19::chr8:37003588..37003608,-p@chr8:37003588..37003608
-
Hg19::chr8:69832864..69832865,+p@chr8:69832864..69832865
+
Hg19::chr8:69834272..69834299,-p@chr8:69834272..69834299
-
Hg19::chr8:69837388..69837402,-p@chr8:69837388..69837402
-
Hg19::chr9:107039238..107039243,-p@chr9:107039238..107039243
-
Hg19::chr9:114720627..114720666,+p@chr9:114720627..114720666
+
Hg19::chr9:114811656..114811667,+p@chr9:114811656..114811667
+
Hg19::chr9:114811717..114811737,+p@chr9:114811717..114811737
+
Hg19::chr9:114835859..114835862,+p@chr9:114835859..114835862
+
Hg19::chr9:118356219..118356259,+p@chr9:118356219..118356259
+
Hg19::chr9:118413157..118413164,-p@chr9:118413157..118413164
-
Hg19::chr9:118413835..118413843,-p@chr9:118413835..118413843
-
Hg19::chr9:13706264..13706267,+p@chr9:13706264..13706267
+
Hg19::chr9:13707925..13707941,+p@chr9:13707925..13707941
+
Hg19::chr9:83647430..83647434,+p@chr9:83647430..83647434
+
Hg19::chrX:3445372..3445378,-p@chrX:3445372..3445378
-
Hg19::chrX:45376982..45376988,+p@chrX:45376982..45376988
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
artery wall4.00e-504
tunica adventitia of artery4.00e-504
adventitia4.00e-504
tunica adventitia of blood vessel4.00e-504
aorta tunica adventitia4.00e-504
aorta wall4.00e-504
blood vessel layer3.16e-297
brachiocephalic artery9.18e-262
brachiocephalic vasculature9.18e-262
systemic artery9.87e-2533
systemic arterial system9.87e-2533
aorta4.43e-2221
aortic system4.43e-2221
artery1.19e-1942
arterial blood vessel1.19e-1942
arterial system1.19e-1942
anatomical wall1.44e-1712
epithelial tube open at both ends2.92e-1459
blood vessel2.92e-1459
blood vasculature2.92e-1459
vascular cord2.92e-1459
vessel1.71e-1268
vasculature5.31e-1178
vascular system5.31e-1178
splanchnic layer of lateral plate mesoderm2.17e-1083
cardiovascular system4.22e-08109
circulatory system6.64e-08112
epithelial tube1.34e-07117


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
CEBPB#1051652.539826449404974.68082420165369e-136.84678709799033e-11
EP300#2033802.65644773577381.35062987529171e-172.87874354174676e-15
ESR1#2099152.262397301187830.002966980173026560.0158144555624539
FOS#2353682.999318436298142.64408983603706e-175.4899820752659e-15
GATA2#2624754.685636666747793.6698247966208e-311.5392483210212e-28
GATA3#2625192.536734366602520.000212620714811310.00245152294481988
JUN#3725774.722979646126952.50618264375689e-321.10908139462426e-29
JUND#3727672.297267078947841.75325451469847e-112.12669161742849e-09
NR3C1#2908322.348709542144796.18715449940844e-060.000182846697443044
PRDM1#63963.877381052278260.004929941781788110.0230391171356796
SIRT6#5154853.765647156618260.01124293297375360.041275333128721
STAT3#6774603.093960293280669.81881038044625e-161.85102299155853e-13



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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