Coexpression cluster:C2800: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 3: | Line 3: | ||
|full_id=C2800_pineal_teratocarcinoma_hepatoblastoma_optic_testicular_spinal_H9 | |full_id=C2800_pineal_teratocarcinoma_hepatoblastoma_optic_testicular_spinal_H9 | ||
|id=C2800 | |id=C2800 | ||
|ontology_enrichment_celltype=CL:0000148! | |ontology_enrichment_celltype=CL:0000148!1.99e-07!10;CL:0000541!1.99e-07!10 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON: | |ontology_enrichment_uberon=UBERON:0007023!3.54e-34!114;UBERON:0001017!1.65e-33!81;UBERON:0001016!1.28e-32!89;UBERON:0001049!1.77e-30!56;UBERON:0005068!1.77e-30!56;UBERON:0006241!1.77e-30!56;UBERON:0007135!1.77e-30!56;UBERON:0000073!2.01e-28!53;UBERON:0002616!2.01e-28!53;UBERON:0000955!2.40e-26!68;UBERON:0006238!2.40e-26!68;UBERON:0002346!2.93e-25!86;UBERON:0011216!3.89e-25!223;UBERON:0003075!3.32e-24!82;UBERON:0007284!3.32e-24!82;UBERON:0000477!3.82e-23!373;UBERON:0002780!1.06e-22!41;UBERON:0001890!1.06e-22!41;UBERON:0003080!1.06e-22!41;UBERON:0006240!1.06e-22!41;UBERON:0004121!2.07e-22!171;UBERON:0000924!2.07e-22!171;UBERON:0006601!2.07e-22!171;UBERON:0010371!2.60e-20!104;UBERON:0003528!1.28e-19!34;UBERON:0002020!1.28e-19!34;UBERON:0001893!1.82e-19!34;UBERON:0002791!2.47e-18!32;UBERON:0001869!3.95e-18!32;UBERON:0003056!8.52e-17!61;UBERON:0004111!2.84e-16!240;UBERON:0010314!5.79e-16!132;UBERON:0000025!4.05e-15!192;UBERON:0000956!2.23e-14!25;UBERON:0000203!2.23e-14!25;UBERON:0000481!9.62e-14!342;UBERON:0002619!2.28e-13!22;UBERON:0001950!2.90e-12!20;UBERON:0000119!4.41e-12!309;UBERON:0000483!5.18e-12!306;UBERON:0000468!7.94e-11!656;UBERON:0000922!3.22e-10!592;UBERON:0003076!7.11e-09!15;UBERON:0003057!7.11e-09!15;UBERON:0000064!9.83e-09!218;UBERON:0005423!2.00e-08!581;UBERON:0000480!7.71e-08!625;UBERON:0000062!1.01e-07!503;UBERON:0000467!1.09e-07!624;UBERON:0004732!1.20e-07!13;UBERON:0004733!5.92e-07!12;UBERON:0002028!5.92e-07!12;UBERON:0007277!5.92e-07!12 | ||
|tf_chipseq_enrich=BCLAF1#9774;3:16.2394857075914:0.00038025670676648:0.00376718176797423!CTBP2#1488;3:47.0377502544961:1.60047699357395e-05:0.000370379385623466!EBF1#1879;3:6.67985013492675:0.00518429411827891:0.0240598335148832!EP300#2033;3:5.0804562946674:0.0114429840539824:0.041912527586935!IRF4#3662;3:16.4358845150581:0.000366943139555461:0.00365993453844263!JUND#3727;3:5.24599795640327:0.0104343275174842:0.0387109065965164!NANOG#79923;3:21.9335838607595:0.000155753581638277:0.00196529519303129!PAX5#5079;3:5.00217414838337:0.0119653317478641:0.0435174565543661!POU2F2#5452;3:6.82959304330689:0.00486047377520374:0.0227725548700598!RAD21#5885;3:7.76627542159225:0.003341119385872:0.0172735591080187!REST#5978;3:7.23752153709602:0.00410469730419261:0.0195892196011959!RFX5#5993;3:9.03593312039632:0.00214456119132407:0.0123880434878703!TAF7#6879;3:8.57480205369294:0.0025005543351524:0.0140383483421481!TCF12#6938;3:7.97584867663982:0.00309092039601307:0.0162872167123718!TCF7L2#6934;3:8.07763242235301:0.00297838168583462:0.0158671294065947!TRIM28#10155;3:13.9428937839469:0.000597285818425842:0.00499639035567292!USF1#7391;3:4.77112445790597:0.0137046588718802:0.0483270036776274!ZEB1#6935;3:12.6663240131579:0.00079333607591285:0.00613515190168546!ZNF263#10127;3:6.16638122775801:0.00653981434797598:0.0279876934391191 | |tf_chipseq_enrich=BCLAF1#9774;3:16.2394857075914:0.00038025670676648:0.00376718176797423!CTBP2#1488;3:47.0377502544961:1.60047699357395e-05:0.000370379385623466!EBF1#1879;3:6.67985013492675:0.00518429411827891:0.0240598335148832!EP300#2033;3:5.0804562946674:0.0114429840539824:0.041912527586935!IRF4#3662;3:16.4358845150581:0.000366943139555461:0.00365993453844263!JUND#3727;3:5.24599795640327:0.0104343275174842:0.0387109065965164!NANOG#79923;3:21.9335838607595:0.000155753581638277:0.00196529519303129!PAX5#5079;3:5.00217414838337:0.0119653317478641:0.0435174565543661!POU2F2#5452;3:6.82959304330689:0.00486047377520374:0.0227725548700598!RAD21#5885;3:7.76627542159225:0.003341119385872:0.0172735591080187!REST#5978;3:7.23752153709602:0.00410469730419261:0.0195892196011959!RFX5#5993;3:9.03593312039632:0.00214456119132407:0.0123880434878703!TAF7#6879;3:8.57480205369294:0.0025005543351524:0.0140383483421481!TCF12#6938;3:7.97584867663982:0.00309092039601307:0.0162872167123718!TCF7L2#6934;3:8.07763242235301:0.00297838168583462:0.0158671294065947!TRIM28#10155;3:13.9428937839469:0.000597285818425842:0.00499639035567292!USF1#7391;3:4.77112445790597:0.0137046588718802:0.0483270036776274!ZEB1#6935;3:12.6663240131579:0.00079333607591285:0.00613515190168546!ZNF263#10127;3:6.16638122775801:0.00653981434797598:0.0279876934391191 | ||
|tfbs_overrepresentation=0.191353,0.0774498,0.814139,0.0631091,0.257053,0.363996,0.0569281,0.00085669,0.043387,0.0341265,0.181435,0.288577,0.0323727,0.164339,0.193153,0.0816702,0.183412,0.128744,0.0698403,0.141416,0.000201399,0.172742,0.107781,0.124486,0.0550418,0.276459,0.00405868,0.119094,0.186914,0.122514,0.26347,0.149094,0.0239693,0.267529,0.0877018,0.111013,0.00526413,0.0568767,0.157159,0.0879352,0.126525,0.0326801,0.182216,0.0307461,0.157881,0.0480278,0.0503649,0.0299044,0.145553,0.158244,0.0214762,0.0715789,0.0924421,0.12203,0.255843,0.00131748,0.0103896,0.00426281,0.103044,0.138225,0.0390464,0.194086,0.142115,0.0999599,0.0720888,0.0667453,0.439574,0.0792005,0.113084,0.216289,0.133576,0.0892037,0.116917,0.155921,0.00995563,0.0227583,0.126543,0.0578308,0.0493551,0.00965832,0.125428,0.290468,0.0562614,0.150119,0.368178,0.320801,0.0848546,0.268505,0.355976,0.0827752,0.112676,0.0655645,0.12511,0.0626609,0.112199,0.000638287,0.0314145,0.199405,0.000330603,0.347653,0.0759036,0.350158,0.184542,0.0491142,0.280878,0.0541957,0.0883058,0.423154,0.0187949,0.34189,0.23573,0.0450707,0.020224,0.0235108,0.000431715,0.0447483,0.0270258,0.0748174,0.180926,0.110194,0.215858,0.275495,0.0011697,0.112709,0.134107,0.228632,0.119051,0.0196757,0.110868,0.016435,0.078637,0.0985137,0.0755515,0.0302655,0.164103,0.141472,0.085537,0.0730922,0.0438087,0.0052702,0.0302521,0.166414,0.262198,0.202388,0.122756,0.0913381,0.129544,0.110696,0.0515825,0.157774,3.97677e-11,0.186826,0.233377,0.0352845,0.0565357,0.153577,0.0984158,0.29227,0.0683304,0.0447121,0.291455,0.124982,0.152417,0.192028,0.346873,0.149398,0.0530169,0.166112,0.0534404,0.392741,0.2321,0.179282,0.564569,0.0715212,0.105131,0.118265,0.182591,0.234755,0.230552,0.0472274,0.00172168,0.159869,0.0363736,0.15105,1.4426e-09,0.155237,0.236268,0.0532055,0.108938,0.224443,0.140245,0.241581,0.0136231,0.292792,0.0114296,0.00198009,0.102951,0.0795624,0.00409908,0.00055164,0.117261,0.0797088,0.0408965,0.0799774,0.177664,0.329956,0.346995,0.197158,0.265132,0.230439,0.0606832,0.136664,0.158184,0.147626,0.393313,0.218801,0.00190756,0.132273,0.0830988,0.134907,0.184613,0.462724,0.202467,0.208718,0.0972471,0.165147,0.180711,0.112956,0.0797807,0.0790532,0.675167,0.476758,0.0553945,0.10068,0.125804,0.122288,0.0624687,0.334388,0.21183,0.275612,0.235571,0.435782,0.128998,0.109226,0.151958,0.178155,0.107176,0.146021,0.463127,0.15291,0.206234,0.238926,0.239646,0.128521,0.00864814,0.000100258,0.14037,0.00362042,0.0916845,0.112868,0.0034321,0.226367,0.0241753,0.167038,0.0457509,0.106603,0.106727,0.00761313,0.154253,0.0993998,0.00993324,0.0834863,0.324356,0.18736,0.113754,0.0504034,0.169684,0.690367,0.495926,0.149583,0.73998,0.005515,0.672445,0.0246898,0.420045,0.0114582,0.332539,0.0457383,0.464128,0.00166801,0.594055,0.414547,0.146105,0.413223,0.639461,5.63225e-05,0.34505,0.369161,0.153719,2.93785e-09,0.000207244,0.702495,0.241524,0.45167,0.0299727,0.520726,0.143893,0.41477,0.279946,0.00704767,0.467825,0.201843,0.00309806,0.632838,0.00337314,0.460819,0.511459,0.586668,0.322903,0.350886,0.380582,0.583749,0.398372,0.286293,0.606558,0.127626,0.359128,0.395864,0.683133,0.0115272,0.188516,0.682118,0.0364944,0.369971,0.214221,0.181193,0.464342,0.109673,0.131933,0.235444,0.0255809,0.402752,0.548076,0.349116,0.302142,0.239545,0.432689,0.640367,0.343881,0.377117,0.606382,0.0733855,9.90604e-07,0.316925,0.356561,0.573659,0.211506,0.00402649,0.0962508,0.238465,0.341199,0.301365,0.0306084,0.00604019,0.773224,0.00458076,0.656755,0.54723,0.280307,0.0144019,0.469888,0.0596868,0.0984075,0.00537023,0.0537754,0.694744,5.74099e-08,0.372182,0.429205,0.578951,0.0769243,9.41319e-08,0.0697989,0.35234,0.644643,0.525923,0.291917,0.421082,0.25441,0.202782,0.000163656,0.517933,0.219758,0.517001,0.0746589,0.73448,0.419676,0.188259,0.189182,0.477589,0.46699,0.546448,0.198922,0.321282,0.198207,0.0616078,0.178485,0.329745,0.00103807,0.129238,0.651295,0.370995,0.360161,0.429696,0.386216,0.385297,0.00845714,0.606408,0.259338,0.360203,0.333725,0.447838,0.289666,0.153861,0.16264,3.98431e-05,0.00168732,0.00014407,0.265037,0.000575107,0.754776,0.179179,0.341771,0.424526,0.000847093,0.356381,0.184395,0.194887,0.256884,0.206945,0.304719,0.462531,0.296994,0.0326312,0.117049,0.0786167,0.629381,0.729876,0.111753,0.276604,0.436806,0.0115435,0.0330909,0.00283311,0.0115505,0.397546,0.0919254,0.0735469,0.248103,0.102621,0.0760107,0.0188226,0.286156,0.00372182,0.0445868,0.540322,0.247151,0.146385,0.0112321,0.0576261,0.0130551,0.164977,0.0164151,0.139918,0.34669,0.0828344,0.4729,0.0238089,0.0851202,0.354433,0.48311,0.0614918,0.219485,0.149782,0.136923,0.118103,0.113892,0.207214,0.140201,0.0580534,0.00518407,0.161297,0.168389,0.270152,0.249506,0.432751,0.0660736,0.108971,0.0879235,0.235214,0.0111468,0.28124,0.0175667,0.0347823,0.172263,0.0323461,4.52769e-05,0.257309,0.00075872,0.166608,0.227224,0.238082,0.0259579,0.115115,0.00814887,0.0149794,0.28498,0.140114,0.348988,0.00641248,0.000142533,0.183585,0.271662,0.03989,0.171436,0.05892,0.0691994,0.268299,0.198844,0.104946,0.127738,0.207615,0.161213,0.118999,0.0737069,0.357807,0.254051,0.178782,0.019419,0.0866228,0.0408454,0.282657,0.105411,0.0997542,0.209692,0.248936,0.0725263,0.102587,0.0742013,0.0552936,0.0457886,0.0514927,0.324236,0.220368,0.258624,0.064656,0.226143,0.460406,0.0438521,0.435508,0.281453,0.0522771,0.0787278,0.0372041,0.159873,0.142462,0.143935,0.332403,0.0379537,0.000812168,0.187953,0.051459,0.114868,0.0726892,0.18732,0.32305,0.278397,0.000207818,0.170848,0.144756,0.302909,0.363016,0.100188,0.223102,0.107653,0.235857,0.419621,0.191914,0.0180783,0.216557,0.182956,0.116818,0.0883765,0.36316,0.0625685,0.124464,0.544477,0.173134,0.101893,0.142875,0.167635,0.171311,0.787798,0.189107,0.0685131,0.130287,0.0661526,0.0815772,0.0993937,0.122878,0.187329,0.0451012,0.0976639,0.351199,0.833813,0.0150607,0.278645,0.0769795,0.155708,0.248017,0.22995,0.091341,0.0760151,0.0629459,0.486024,0.0803251,0.226641,0.0832234,0.0939463,0.286748,0.0114526,0.0471607,0.163865,0.226359,0.0464703,0.709625,0.265324,0.043404,0.141699,0.0887743,0.142302,0.0653269,0.125712,0.264432,0.0994829,0.0604041,0.144185,0.0925862,0.0466818,0.199201,0.049937,0.172796,0.0595495,0.071232,0.149346,0.121978,0.0269564,0.137423,0.0448074,0.0754883,0.299492,0.100006,0.0756617,0.197817,0.0345492,0.00462092,0.133127,0.410303,0.223717,0.426452,0.0207859,0.0826805,0.246601,0.0199582,0.608002,4.05918e-06,0.0946865,0.120618,0.079499,0.18762,0.195618,0.127688,0.201169,0.0262879,0.24948,0.178639,0.291976,0.320355,0.364334,0.15547,0.110256,0.415419,0.14794,0.147307,0.240761,0.225961,0.00808241,0.335582,0.317428,0.182843,0.130771,0.00777449,0.135777,0.147842,0.0339286,0.217363,0.119015,0.32805,0.21618,0.0323312,0.107021,0.238657,0.20272,0.392453,0.0724243,0.0780061,0.315336,0.230477,0.279823,0.295555,0.154895,0.0103352,0.0478217,0.158752,0.170854,0.0575231,0.174063,0.0368787,0.0245723,0.54832,0.502211,0.296013,0.282366,0.000152471,0.459994,0.00698686,0.548059,0.25423,0.490559,0.45013,0.00559995,0.0272171,0.111549,0.747471,0.529642,0.244786,0.483077,0.224887,0.603763,0.541914,0.0778742,0.00784768,0.0217959,0.0470729,0.0757071,5.85899e-05,0.0284983,0.360199,0.241059,1.9925e-08,0.00893555,0.365494,0.212703,0.0515679,0.364079,0.680099,0.579886,0.421038,0.0537414,6.0015e-05,0.0458249,0.310552,0.324103,0.142433,0.261345,0.000195845,0.209437,0.0404917,0.000572229,0.598945,0.0221843,0.464001,0.152018,0.0118057,1.00678e-05,0.00283087,0.0500888,0.261575,0.257956,1.75737e-05,0.379063,0.326516,0.16985,0.436016,0.136753,0.0220519,0.183837,0.507324,0.126097,0.0146433,0.0215868,0.212239,0.00548706,0.156999,0.0106153,0.025886,0.39549,0.234254,0.357409,0.599068,0.365184,0.034133,0.0746831,0.404625,0.172147,0.0187136,6.99283e-06,0.139684,0.077723,8.71675e-05,0.274432,0.284496,0.512545,0.162017,0.563206,0.034169,0.110875,0.263302,0.192292,0.180735,0.0182207,0.216102,0.0355932,0.109605,0.0149457,0.582542,0.02784,0.417131,0.0038466,0.0183052,0.156131,0.454761,0.271678,0.00471559,0.122467,0.301581,0.261657,0.346776,0.0260085,0.545655,0.438176,0.349112,0.0124698,0.0134085,0.307816,0.461541,0.000154397,0.382854,0.598787,0.0285097,0.07062,0.0576521,0.0277333,2.35715e-05,0.0690544,0.282281,0.612712,0.2536,0.246827,0.564333,0.00849832,0.387134,0.559969,0.0738474,2.08494e-05,0.574252,0.493455,0.346636,0.457747,0.348802,0.137708,0.0118751,0.022473,0.42505,0.00339873,0.131374,0.0286377,0.416962,0.0806585,0.0125878,0.387805,0.000288393,0.22798,0.102495,6.26089e-06,0.263896,0.0446972,0.24452,0.329284,0.242783,0.0947248,0.0643357,0.210656,0.246234,0.02408,0.281295,0.00397584,0.118257,0.125087,0.215123,0.321224,0.0265924,0.325254,0.0392149,0.0460393,0.231754,0.249415,0.283107,0.285648,0.0191181,0.391071,0.0433305,0.000250206,0.0316941,0.160955,0.256687,0.0432189,0.122439,0.16188,0.23235,0.00521493,0.353147,0.112422,0.170886,0.267687,0.315656,0.284866,0.0887542,9.7616e-07,0.338547,0.147872,0.0191872,0.293546,0.210125,0.00536668,0.218414,0.0509944,0.0871471,0.0689852,0.0602698,0.341188,0.259328,0.113839,0.201057,0.15696,0.129351,0.141936,0.0786166,0.276997,0.205513,0.282389,0.0346487,0.162089,0.0617695,0.0016375,0.233244,0.207281,0.327401,7.88771e-05,0.27845,0.161712,0.237871,0.239139,0.000155126,0.328852,0.332769,0.262022,0.274403,0.266687,0.184534,0.248707,8.01031e-09,0.15156,1.58085e-06,0.313858,0.223773,0.036547,0.00116104,1.40447e-05,0.0528669,4.14804e-06,0.170837,0.327002,0.00492748,0.222656,0.028353,0.127111,0.259989,0.0888526,0.355805,0.0433915,0.108118,0.259901,0.139723,0.0708274,0.0710478,0.196248,0.102645,0.0539258,0.0709978,0.401939,0.332746,0.271338,0.242121,0.298673,0.244395,0.106889,0.128632,0.0845989,0.159153,0.0842401,0.13698,0.0874421,0.100355,0.167854,0.142846,0.0583767,0.088258,0.117657,0.0486914,0.175784,0.262778,0.0805224,0.0755696,0.0201006,0.00121144,0.00831677,0.325785,0.257476,0.291176,0.376537,0.00739196,0.229571,0.359036,0.335984,0.171704,4.76577e-06,0.0387226,0.256405,0.0109327,0.302133,0.00207843,0.151361,0.279606,0.286696,0.150674,0.00325002,0.246177,0.35674,0.35852,0.00707033,0.213257,0.287217,0.122782,0.410951,0.000430266,0.266974,0.00825997,0.112897,0.398354,0.222091,0.0228412,0.0675312,0.0936726,0.343425,0.132374,0.285122,0.22741,0.203996,0.276721,0.321965,0.264707,0.450113 | |tfbs_overrepresentation=0.191353,0.0774498,0.814139,0.0631091,0.257053,0.363996,0.0569281,0.00085669,0.043387,0.0341265,0.181435,0.288577,0.0323727,0.164339,0.193153,0.0816702,0.183412,0.128744,0.0698403,0.141416,0.000201399,0.172742,0.107781,0.124486,0.0550418,0.276459,0.00405868,0.119094,0.186914,0.122514,0.26347,0.149094,0.0239693,0.267529,0.0877018,0.111013,0.00526413,0.0568767,0.157159,0.0879352,0.126525,0.0326801,0.182216,0.0307461,0.157881,0.0480278,0.0503649,0.0299044,0.145553,0.158244,0.0214762,0.0715789,0.0924421,0.12203,0.255843,0.00131748,0.0103896,0.00426281,0.103044,0.138225,0.0390464,0.194086,0.142115,0.0999599,0.0720888,0.0667453,0.439574,0.0792005,0.113084,0.216289,0.133576,0.0892037,0.116917,0.155921,0.00995563,0.0227583,0.126543,0.0578308,0.0493551,0.00965832,0.125428,0.290468,0.0562614,0.150119,0.368178,0.320801,0.0848546,0.268505,0.355976,0.0827752,0.112676,0.0655645,0.12511,0.0626609,0.112199,0.000638287,0.0314145,0.199405,0.000330603,0.347653,0.0759036,0.350158,0.184542,0.0491142,0.280878,0.0541957,0.0883058,0.423154,0.0187949,0.34189,0.23573,0.0450707,0.020224,0.0235108,0.000431715,0.0447483,0.0270258,0.0748174,0.180926,0.110194,0.215858,0.275495,0.0011697,0.112709,0.134107,0.228632,0.119051,0.0196757,0.110868,0.016435,0.078637,0.0985137,0.0755515,0.0302655,0.164103,0.141472,0.085537,0.0730922,0.0438087,0.0052702,0.0302521,0.166414,0.262198,0.202388,0.122756,0.0913381,0.129544,0.110696,0.0515825,0.157774,3.97677e-11,0.186826,0.233377,0.0352845,0.0565357,0.153577,0.0984158,0.29227,0.0683304,0.0447121,0.291455,0.124982,0.152417,0.192028,0.346873,0.149398,0.0530169,0.166112,0.0534404,0.392741,0.2321,0.179282,0.564569,0.0715212,0.105131,0.118265,0.182591,0.234755,0.230552,0.0472274,0.00172168,0.159869,0.0363736,0.15105,1.4426e-09,0.155237,0.236268,0.0532055,0.108938,0.224443,0.140245,0.241581,0.0136231,0.292792,0.0114296,0.00198009,0.102951,0.0795624,0.00409908,0.00055164,0.117261,0.0797088,0.0408965,0.0799774,0.177664,0.329956,0.346995,0.197158,0.265132,0.230439,0.0606832,0.136664,0.158184,0.147626,0.393313,0.218801,0.00190756,0.132273,0.0830988,0.134907,0.184613,0.462724,0.202467,0.208718,0.0972471,0.165147,0.180711,0.112956,0.0797807,0.0790532,0.675167,0.476758,0.0553945,0.10068,0.125804,0.122288,0.0624687,0.334388,0.21183,0.275612,0.235571,0.435782,0.128998,0.109226,0.151958,0.178155,0.107176,0.146021,0.463127,0.15291,0.206234,0.238926,0.239646,0.128521,0.00864814,0.000100258,0.14037,0.00362042,0.0916845,0.112868,0.0034321,0.226367,0.0241753,0.167038,0.0457509,0.106603,0.106727,0.00761313,0.154253,0.0993998,0.00993324,0.0834863,0.324356,0.18736,0.113754,0.0504034,0.169684,0.690367,0.495926,0.149583,0.73998,0.005515,0.672445,0.0246898,0.420045,0.0114582,0.332539,0.0457383,0.464128,0.00166801,0.594055,0.414547,0.146105,0.413223,0.639461,5.63225e-05,0.34505,0.369161,0.153719,2.93785e-09,0.000207244,0.702495,0.241524,0.45167,0.0299727,0.520726,0.143893,0.41477,0.279946,0.00704767,0.467825,0.201843,0.00309806,0.632838,0.00337314,0.460819,0.511459,0.586668,0.322903,0.350886,0.380582,0.583749,0.398372,0.286293,0.606558,0.127626,0.359128,0.395864,0.683133,0.0115272,0.188516,0.682118,0.0364944,0.369971,0.214221,0.181193,0.464342,0.109673,0.131933,0.235444,0.0255809,0.402752,0.548076,0.349116,0.302142,0.239545,0.432689,0.640367,0.343881,0.377117,0.606382,0.0733855,9.90604e-07,0.316925,0.356561,0.573659,0.211506,0.00402649,0.0962508,0.238465,0.341199,0.301365,0.0306084,0.00604019,0.773224,0.00458076,0.656755,0.54723,0.280307,0.0144019,0.469888,0.0596868,0.0984075,0.00537023,0.0537754,0.694744,5.74099e-08,0.372182,0.429205,0.578951,0.0769243,9.41319e-08,0.0697989,0.35234,0.644643,0.525923,0.291917,0.421082,0.25441,0.202782,0.000163656,0.517933,0.219758,0.517001,0.0746589,0.73448,0.419676,0.188259,0.189182,0.477589,0.46699,0.546448,0.198922,0.321282,0.198207,0.0616078,0.178485,0.329745,0.00103807,0.129238,0.651295,0.370995,0.360161,0.429696,0.386216,0.385297,0.00845714,0.606408,0.259338,0.360203,0.333725,0.447838,0.289666,0.153861,0.16264,3.98431e-05,0.00168732,0.00014407,0.265037,0.000575107,0.754776,0.179179,0.341771,0.424526,0.000847093,0.356381,0.184395,0.194887,0.256884,0.206945,0.304719,0.462531,0.296994,0.0326312,0.117049,0.0786167,0.629381,0.729876,0.111753,0.276604,0.436806,0.0115435,0.0330909,0.00283311,0.0115505,0.397546,0.0919254,0.0735469,0.248103,0.102621,0.0760107,0.0188226,0.286156,0.00372182,0.0445868,0.540322,0.247151,0.146385,0.0112321,0.0576261,0.0130551,0.164977,0.0164151,0.139918,0.34669,0.0828344,0.4729,0.0238089,0.0851202,0.354433,0.48311,0.0614918,0.219485,0.149782,0.136923,0.118103,0.113892,0.207214,0.140201,0.0580534,0.00518407,0.161297,0.168389,0.270152,0.249506,0.432751,0.0660736,0.108971,0.0879235,0.235214,0.0111468,0.28124,0.0175667,0.0347823,0.172263,0.0323461,4.52769e-05,0.257309,0.00075872,0.166608,0.227224,0.238082,0.0259579,0.115115,0.00814887,0.0149794,0.28498,0.140114,0.348988,0.00641248,0.000142533,0.183585,0.271662,0.03989,0.171436,0.05892,0.0691994,0.268299,0.198844,0.104946,0.127738,0.207615,0.161213,0.118999,0.0737069,0.357807,0.254051,0.178782,0.019419,0.0866228,0.0408454,0.282657,0.105411,0.0997542,0.209692,0.248936,0.0725263,0.102587,0.0742013,0.0552936,0.0457886,0.0514927,0.324236,0.220368,0.258624,0.064656,0.226143,0.460406,0.0438521,0.435508,0.281453,0.0522771,0.0787278,0.0372041,0.159873,0.142462,0.143935,0.332403,0.0379537,0.000812168,0.187953,0.051459,0.114868,0.0726892,0.18732,0.32305,0.278397,0.000207818,0.170848,0.144756,0.302909,0.363016,0.100188,0.223102,0.107653,0.235857,0.419621,0.191914,0.0180783,0.216557,0.182956,0.116818,0.0883765,0.36316,0.0625685,0.124464,0.544477,0.173134,0.101893,0.142875,0.167635,0.171311,0.787798,0.189107,0.0685131,0.130287,0.0661526,0.0815772,0.0993937,0.122878,0.187329,0.0451012,0.0976639,0.351199,0.833813,0.0150607,0.278645,0.0769795,0.155708,0.248017,0.22995,0.091341,0.0760151,0.0629459,0.486024,0.0803251,0.226641,0.0832234,0.0939463,0.286748,0.0114526,0.0471607,0.163865,0.226359,0.0464703,0.709625,0.265324,0.043404,0.141699,0.0887743,0.142302,0.0653269,0.125712,0.264432,0.0994829,0.0604041,0.144185,0.0925862,0.0466818,0.199201,0.049937,0.172796,0.0595495,0.071232,0.149346,0.121978,0.0269564,0.137423,0.0448074,0.0754883,0.299492,0.100006,0.0756617,0.197817,0.0345492,0.00462092,0.133127,0.410303,0.223717,0.426452,0.0207859,0.0826805,0.246601,0.0199582,0.608002,4.05918e-06,0.0946865,0.120618,0.079499,0.18762,0.195618,0.127688,0.201169,0.0262879,0.24948,0.178639,0.291976,0.320355,0.364334,0.15547,0.110256,0.415419,0.14794,0.147307,0.240761,0.225961,0.00808241,0.335582,0.317428,0.182843,0.130771,0.00777449,0.135777,0.147842,0.0339286,0.217363,0.119015,0.32805,0.21618,0.0323312,0.107021,0.238657,0.20272,0.392453,0.0724243,0.0780061,0.315336,0.230477,0.279823,0.295555,0.154895,0.0103352,0.0478217,0.158752,0.170854,0.0575231,0.174063,0.0368787,0.0245723,0.54832,0.502211,0.296013,0.282366,0.000152471,0.459994,0.00698686,0.548059,0.25423,0.490559,0.45013,0.00559995,0.0272171,0.111549,0.747471,0.529642,0.244786,0.483077,0.224887,0.603763,0.541914,0.0778742,0.00784768,0.0217959,0.0470729,0.0757071,5.85899e-05,0.0284983,0.360199,0.241059,1.9925e-08,0.00893555,0.365494,0.212703,0.0515679,0.364079,0.680099,0.579886,0.421038,0.0537414,6.0015e-05,0.0458249,0.310552,0.324103,0.142433,0.261345,0.000195845,0.209437,0.0404917,0.000572229,0.598945,0.0221843,0.464001,0.152018,0.0118057,1.00678e-05,0.00283087,0.0500888,0.261575,0.257956,1.75737e-05,0.379063,0.326516,0.16985,0.436016,0.136753,0.0220519,0.183837,0.507324,0.126097,0.0146433,0.0215868,0.212239,0.00548706,0.156999,0.0106153,0.025886,0.39549,0.234254,0.357409,0.599068,0.365184,0.034133,0.0746831,0.404625,0.172147,0.0187136,6.99283e-06,0.139684,0.077723,8.71675e-05,0.274432,0.284496,0.512545,0.162017,0.563206,0.034169,0.110875,0.263302,0.192292,0.180735,0.0182207,0.216102,0.0355932,0.109605,0.0149457,0.582542,0.02784,0.417131,0.0038466,0.0183052,0.156131,0.454761,0.271678,0.00471559,0.122467,0.301581,0.261657,0.346776,0.0260085,0.545655,0.438176,0.349112,0.0124698,0.0134085,0.307816,0.461541,0.000154397,0.382854,0.598787,0.0285097,0.07062,0.0576521,0.0277333,2.35715e-05,0.0690544,0.282281,0.612712,0.2536,0.246827,0.564333,0.00849832,0.387134,0.559969,0.0738474,2.08494e-05,0.574252,0.493455,0.346636,0.457747,0.348802,0.137708,0.0118751,0.022473,0.42505,0.00339873,0.131374,0.0286377,0.416962,0.0806585,0.0125878,0.387805,0.000288393,0.22798,0.102495,6.26089e-06,0.263896,0.0446972,0.24452,0.329284,0.242783,0.0947248,0.0643357,0.210656,0.246234,0.02408,0.281295,0.00397584,0.118257,0.125087,0.215123,0.321224,0.0265924,0.325254,0.0392149,0.0460393,0.231754,0.249415,0.283107,0.285648,0.0191181,0.391071,0.0433305,0.000250206,0.0316941,0.160955,0.256687,0.0432189,0.122439,0.16188,0.23235,0.00521493,0.353147,0.112422,0.170886,0.267687,0.315656,0.284866,0.0887542,9.7616e-07,0.338547,0.147872,0.0191872,0.293546,0.210125,0.00536668,0.218414,0.0509944,0.0871471,0.0689852,0.0602698,0.341188,0.259328,0.113839,0.201057,0.15696,0.129351,0.141936,0.0786166,0.276997,0.205513,0.282389,0.0346487,0.162089,0.0617695,0.0016375,0.233244,0.207281,0.327401,7.88771e-05,0.27845,0.161712,0.237871,0.239139,0.000155126,0.328852,0.332769,0.262022,0.274403,0.266687,0.184534,0.248707,8.01031e-09,0.15156,1.58085e-06,0.313858,0.223773,0.036547,0.00116104,1.40447e-05,0.0528669,4.14804e-06,0.170837,0.327002,0.00492748,0.222656,0.028353,0.127111,0.259989,0.0888526,0.355805,0.0433915,0.108118,0.259901,0.139723,0.0708274,0.0710478,0.196248,0.102645,0.0539258,0.0709978,0.401939,0.332746,0.271338,0.242121,0.298673,0.244395,0.106889,0.128632,0.0845989,0.159153,0.0842401,0.13698,0.0874421,0.100355,0.167854,0.142846,0.0583767,0.088258,0.117657,0.0486914,0.175784,0.262778,0.0805224,0.0755696,0.0201006,0.00121144,0.00831677,0.325785,0.257476,0.291176,0.376537,0.00739196,0.229571,0.359036,0.335984,0.171704,4.76577e-06,0.0387226,0.256405,0.0109327,0.302133,0.00207843,0.151361,0.279606,0.286696,0.150674,0.00325002,0.246177,0.35674,0.35852,0.00707033,0.213257,0.287217,0.122782,0.410951,0.000430266,0.266974,0.00825997,0.112897,0.398354,0.222091,0.0228412,0.0675312,0.0936726,0.343425,0.132374,0.285122,0.22741,0.203996,0.276721,0.321965,0.264707,0.450113 | ||
}} | }} | ||
Revision as of 14:26, 19 October 2012
Full id: C2800_pineal_teratocarcinoma_hepatoblastoma_optic_testicular_spinal_H9
Phase1 CAGE Peaks
| Hg19::chr5:115808548..115808552,- | p@chr5:115808548..115808552 - |
| Hg19::chr5:115910459..115910474,- | p2@SEMA6A |
| Hg19::chr5:115910475..115910491,- | p3@SEMA6A |
| Hg19::chr5:115910498..115910536,- | p1@SEMA6A |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
No results for this coexpression
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
No GOStat results
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
| Ontology term | p-value | n |
|---|---|---|
| melanocyte | 1.99e-07 | 10 |
| melanoblast | 1.99e-07 | 10 |
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
{{{tfbs_overrepresentation_jaspar}}} |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)
| TF | #promoters | Enrichment | p-value | q-value |
|---|---|---|---|---|
| BCLAF1#9774 | 3 | 16.2394857075914 | 0.00038025670676648 | 0.00376718176797423 |
| CTBP2#1488 | 3 | 47.0377502544961 | 1.60047699357395e-05 | 0.000370379385623466 |
| EBF1#1879 | 3 | 6.67985013492675 | 0.00518429411827891 | 0.0240598335148832 |
| EP300#2033 | 3 | 5.0804562946674 | 0.0114429840539824 | 0.041912527586935 |
| IRF4#3662 | 3 | 16.4358845150581 | 0.000366943139555461 | 0.00365993453844263 |
| JUND#3727 | 3 | 5.24599795640327 | 0.0104343275174842 | 0.0387109065965164 |
| NANOG#79923 | 3 | 21.9335838607595 | 0.000155753581638277 | 0.00196529519303129 |
| PAX5#5079 | 3 | 5.00217414838337 | 0.0119653317478641 | 0.0435174565543661 |
| POU2F2#5452 | 3 | 6.82959304330689 | 0.00486047377520374 | 0.0227725548700598 |
| RAD21#5885 | 3 | 7.76627542159225 | 0.003341119385872 | 0.0172735591080187 |
| REST#5978 | 3 | 7.23752153709602 | 0.00410469730419261 | 0.0195892196011959 |
| RFX5#5993 | 3 | 9.03593312039632 | 0.00214456119132407 | 0.0123880434878703 |
| TAF7#6879 | 3 | 8.57480205369294 | 0.0025005543351524 | 0.0140383483421481 |
| TCF12#6938 | 3 | 7.97584867663982 | 0.00309092039601307 | 0.0162872167123718 |
| TCF7L2#6934 | 3 | 8.07763242235301 | 0.00297838168583462 | 0.0158671294065947 |
| TRIM28#10155 | 3 | 13.9428937839469 | 0.000597285818425842 | 0.00499639035567292 |
| USF1#7391 | 3 | 4.77112445790597 | 0.0137046588718802 | 0.0483270036776274 |
| ZEB1#6935 | 3 | 12.6663240131579 | 0.00079333607591285 | 0.00613515190168546 |
| ZNF263#10127 | 3 | 6.16638122775801 | 0.00653981434797598 | 0.0279876934391191 |
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data
This analysis result is provided for C0 - C305 clusters.
