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== TomTom analysis ==
 
{{#info:  <br>Analyst: Michiel de Hoon and Hiroko Ohmiya}}  
== Median expression values in each samples ==
{{#info:  <br>Analyst: }}  


{{#if: {{#pos:;;|;}} |
{{#if: {{#pos:;;|;}} |
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<script type="text/javascript">
<script type="text/javascript">
$(document).ready(function() {
$(document).ready(function() {
     $('#tomtom_results').dataTable({
     $('#tf_chipseq_enrich').dataTable({
"sScrollY": "300px",
"sScrollY": "300px",
"bPaginate": false,
"bPaginate": false,
"bScrollCollapse": true,
"bScrollCollapse": true,
"iDisplayLength": -1,
"iDisplayLength": -1,
"aaSorting": [[2,'asc']],
// "aaSorting": [[4,'asc']],   {{#set:median_tpm_forsample={{#explode:$|#|1}}}}
"aoColumnDefs": [{"fnRender": function ( o, val ) {var elem = o.aData[0].split("#"); return "<a href=\"http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?ID="+elem[1]+"&rm=present&collection=CORE\">"+elem[0]+"</a>";}, "aTargets": [ 0 ]}, { "sWidth": "150px", "sType": "numeric", "aTargets": [2,3,4] }]
"aoColumnDefs": [{"fnRender": function ( o, val ) {var elem = o.aData[0].split("#"); return "<a href=\"/resource_browser/FF:"+elem[0]+"\">"+elem[0]+"</a>";}, "aTargets": [ 0 ]}, { "sWidth": "150px", "sType": "numeric", "aTargets": [1] }]
});
});
$('#tomtom_results_wrapper .dataTables_scrollHeadInner tr').css("height", "100px").css("vertical-align", "bottom").css("text-align","left");
});
});
</script>
</script>
</html>
</html>
 
<table id="tf_chipseq_enrich"><html><thead></html><tr><th>FF sample</th><th>Median TPM</th></tr><html></thead><tbody></html>
 
{{#arraymap:11376-118A8#CNhs11051;0.300414226311855!11327-117E4#CNhs11969;0.654063583000557!11473-119C6#CNhs11054;0.361621799925516!11474-119C7#CNhs12067;0.539816048554334!11475-119C8#CNhs12068;0.515551047822759|!|$
 
|<tr><td>{{#replace:{{#replace:$|;|</td><td>}}|:|</td><td>}}</td></tr>
<table id="tomtom_results"><html><thead></html>
<tr><th><div class="rotate90"><p>Target_ID</p></div></th><th><div class="rotate90"><p style="width:1px;">Optimal_offset</p></div></th><th><div class="rotate90"><p>p-value</p></div></th><th><div class="rotate90"><p>E-value</p></div></th><th><div class="rotate90"><p>q-value</p></div></th><th><div  class="rotate90"><p style="width:1px;">Overlap</p></div></th><th><div class="rotate90_2">Query consensus</div></th><th ><div class="rotate90_2">Target consensus</div></th><th><div  class="rotate90"><p style="width:1px;">Orientation</p></div></th></tr><html></thead><tbody></html>
{{#arraymap:sna#MA0086.1;0;0.000269781;0.128416;0.256495;6;CAACTG;CACCTG;-!TAL1::TCF3#MA0091.1;4;0.00138284;0.658233;0.318381;6;CAACTG;CGACCATCTGTT;+!
ZEB1#MA0103.1;0;0.00141154;0.671892;0.318381;6;CAACTG;CACCTG;+!Myf#MA0055.1;3;0.00156538;0.745122;0.318381;6;CAACTG;CAGCAGCTGCTG;+!NHLH1#MA0048.1;3;0.00177224;0.843587;0.318381;6;CAACTG;ACGCAGCTGCGC;-!
Myb#MA0100.1;0;0.00601429;2.8628;0.816872;6;CAACTG;CAACGGCC;-!MET4#MA0335.1;-1;0.013997;6.66255;0.998691;5;CAACTG;AACTGTGG;+!Mycn#MA0104.1;0;0.0187642;8.93177;0.998691;6;CAACTG;CACGTG;+|!|$
|<tr><td>{{#replace:$|;|</td><td>}}</td></tr>
|}}
|}}
<html></tbody></html></table>
<html></tbody></html></table>
 
|No analysis results for this cluster
}}
}}

Revision as of 17:38, 11 September 2012


Median expression values in each samples

<br>Analyst:

FF sampleMedian TPM
11376-118A8#CNhs110510.300414226311855
11327-117E4#CNhs119690.654063583000557
11473-119C6#CNhs110540.361621799925516
11474-119C7#CNhs120670.539816048554334
11475-119C8#CNhs120680.515551047822759
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