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Coexpression cluster:C143: Difference between revisions

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{{Coexpression_clusters
{{Coexpression_clusters
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252058577919365,0.141082552525447,0.28530897907286,0,0,0,0,0,0,0.323868714649035,0.441439887066732,0.403885398680789,0.772771938854328,0.718139497086834,0.686960842452741,0.80480262822629,0.743079280400998,0.677811719420709,0.833193403747721,0.773348614634313,0.701238281507613,0.847667665396804,0.768420042821026,0.695582047763762,0.783082920413564,0.710412423824959,0.772822314968974,0.890796698373783,0.771757248830971,0.721789699717636,0.95221984289076,0.685844553477127,0.82956325105582,0.774354129721908,0.762463071927049,0.754995644261803,0.807558847087115,0.643878012389328,0.675497287323882,0.891186867980104,0.797641890430696,0.650795127684496,0.766650455784811,0.596181413041228,0.662443985218074,0.495231639382133,0.523570541869179,0.453838471516169,0.52394716589884,0.501096956921213,0.450680777971495,0.330424118154027,0.475550145930845,0.391166886134781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.027549189648299,0,0,0.361385850207372,0.409454228967332,0.578881747940152,0.092892723212638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.754204804863376,0.553160249192863,0.74917926160873,0,0,0,0,0,0,0,0.0366482282265911,0,0.0271031519089981,0.0516318862226721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.25593139169027,1.21932171778763,1.30048797408064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242791553592671,0.520328325145468,0.150577011075896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150306889650249,0.399673618657105,0.21494058611927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0813768443325499,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0831827421014,0,0,0,0,0,0,0.0749215657724743,0,0,0,0,0.178242227335072,0.145290817496387,0.33027054911511,0.169222730114762,0.14963850419244,0.130977027813949,0.187529586342753,0.253610608288505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158219072164516,0,0,0,0,0,0,0,0,0,0,0,0.0789089986057754,0,0,0,0,0,0,0,0,0,0.492696922332985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644554282404098,0.0380625695285996,0.185552006688486,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0368115019473605,0,0,0,0,0.0283276594447047,0,0,0,0,0,0,0,0,0.100442890562395,0,0,0,0,0,0,0,0,0,0,0,0.1301578714358,0,0,0,0,0.0402022792589852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0881268324752877,0,0,0,0.0329432353726146,0,0,0,0,0.134780044382252,0,0,0,0,0,0,0,0,0,0.0593938447453515,0,0,0.0539356558948951,0,0,0.164911212366965,0,0.350774507210926,0.299361719979401,0,0,0,0,0,0,0,0,0,0,0,0,0.0456863240084368,0.00674680169097996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.031493427513643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0709257799838506,0,0,0,0,0,0,0,0,0,0,0,0,0.0299826682885844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0322859259446875,0.0858467613960337,0,0,0,0.0778431765528363,0,0,0,0.192644617366899,0.0526615420969484,0,0,0,0,0,0,0.0581752393062885,0,0,0,0.103594832628213,0,0,0,0,0,0,0,0,0,0,0.0317229404497622,0,0,0.0427459664864042,0.0369223107813652,0,0.0271819376754428,0.0261550693490902,0,0,0,0.0107322186783004,0,0.0283076897745917,0.0300822291072195,0,0,0,0,0,0,0,0,0,0.146917605400546,0
|full_id=C143_Monocytederived_CD14_Macrophage_Dendritic_Basophils_CD14CD16_Osteoblast
|full_id=C143_Monocytederived_CD14_Macrophage_Dendritic_Basophils_CD14CD16_Osteoblast
|gostat_on_coexpression_clusters=GO:0005764!lysosome!1.02017609261701e-06!5660;1509;1777;3073;968;10437$GO:0000323!lytic vacuole!1.02017609261701e-06!5660;1509;1777;3073;968;10437$GO:0005773!vacuole!1.59528494725119e-06!5660;1509;1777;3073;968;10437$GO:0048770!pigment granule!0.00221597962737036!1509;10211;526$GO:0042470!melanosome!0.00221597962737036!1509;10211;526$GO:0006687!glycosphingolipid metabolic process!0.00520441115129939!5660;3073$GO:0007040!lysosome organization and biogenesis!0.00520441115129939!5660;3073$GO:0007033!vacuole organization and biogenesis!0.00553175778217785!5660;3073$GO:0044444!cytoplasmic part!0.00555041723408132!968;5660;1509;1777;114294;10211;3073;3460;526;1593;10437$GO:0006955!immune response!0.00573924456023113!2495;929;10068;11006;3903;2217$GO:0006664!glycolipid metabolic process!0.00692069824548751!5660;3073$GO:0016894!endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters!0.00692069824548751!6039;1777$GO:0042127!regulation of cell proliferation!0.00940463468647706!2495;2014;199;2896$GO:0002376!immune system process!0.00940463468647706!2495;929;10068;11006;3903;2217$GO:0045121!lipid raft!0.0105707968653924!929;10211$GO:0008285!negative regulation of cell proliferation!0.0105707968653924!2495;2014;199$GO:0006952!defense response!0.0105707968653924!199;6039;929;11006$GO:0017001!antibiotic catabolic process!0.0105707968653924!114294$GO:0042007!interleukin-18 binding!0.0105707968653924!10068$GO:0006051!N-acetylmannosamine metabolic process!0.0105707968653924!55577$GO:0008800!beta-lactamase activity!0.0105707968653924!114294$GO:0030655!beta-lactam antibiotic catabolic process!0.0105707968653924!114294$GO:0006050!mannosamine metabolic process!0.0105707968653924!55577$GO:0047749!cholestanetriol 26-monooxygenase activity!0.0105707968653924!1593$GO:0004192!cathepsin D activity!0.0105707968653924!1509$GO:0030653!beta-lactam antibiotic metabolic process!0.0105707968653924!114294$GO:0045127!N-acetylglucosamine kinase activity!0.0105707968653924!55577$GO:0006665!sphingolipid metabolic process!0.0152799311272439!5660;3073$GO:0009384!N-acylmannosamine kinase activity!0.015422426849066!55577$GO:0004098!cerebroside-sulfatase activity!0.015422426849066!5660$GO:0016889!endodeoxyribonuclease activity, producing 3'-phosphomonoesters!0.015422426849066!1777$GO:0006880!intracellular sequestering of iron ion!0.015422426849066!2495$GO:0004557!alpha-galactosidase activity!0.015422426849066!5660$GO:0004531!deoxyribonuclease II activity!0.015422426849066!1777$GO:0019964!interferon-gamma binding!0.015422426849066!3460$GO:0004906!interferon-gamma receptor activity!0.015422426849066!3460$GO:0008043!ferritin complex!0.015422426849066!2495$GO:0051704!multi-organism process!0.0172391392478423!929;3460;2217$GO:0008283!cell proliferation!0.0178054596596289!2495;2014;199;2896$GO:0016023!cytoplasmic membrane-bound vesicle!0.0184179678797753!1509;10211;526$GO:0031988!membrane-bound vesicle!0.0187157340953274!1509;10211;526$GO:0004322!ferroxidase activity!0.0194467036203606!2495$GO:0004336!galactosylceramidase activity!0.0194467036203606!5660$GO:0016724!oxidoreductase activity, oxidizing metal ions, oxygen as acceptor!0.0194467036203606!2495$GO:0019955!cytokine binding!0.0199777085932645!10068;3460$GO:0050884!neuromuscular process controlling posture!0.0232752477158334!3073$GO:0004563!beta-N-acetylhexosaminidase activity!0.0232752477158334!3073$GO:0016999!antibiotic metabolic process!0.0232752477158334!114294$GO:0006689!ganglioside catabolic process!0.0232752477158334!3073$GO:0031410!cytoplasmic vesicle!0.0254486866919106!1509;10211;526$GO:0031982!vesicle!0.0254486866919106!1509;10211;526$GO:0016019!peptidoglycan receptor activity!0.0254486866919106!929$GO:0046479!glycosphingolipid catabolic process!0.0254486866919106!3073$GO:0019961!interferon binding!0.0254486866919106!3460$GO:0004904!interferon receptor activity!0.0254486866919106!3460$GO:0004348!glucosylceramidase activity!0.0254486866919106!5660$GO:0017144!drug metabolic process!0.0299925093723461!114294$GO:0016722!oxidoreductase activity, oxidizing metal ions!0.0337936779888668!2495$GO:0019377!glycolipid catabolic process!0.0337936779888668!3073$GO:0004519!endonuclease activity!0.0342058332122311!6039;1777$GO:0019915!sequestering of lipid!0.0350444381671572!3073$GO:0001573!ganglioside metabolic process!0.0350444381671572!3073$GO:0007628!adult walking behavior!0.0350444381671572!3073$GO:0019864!IgG binding!0.0350444381671572!2217$GO:0016600!flotillin complex!0.0350444381671572!10211$GO:0042834!peptidoglycan binding!0.0371269217025048!929$GO:0004767!sphingomyelin phosphodiesterase activity!0.0371269217025048!5660$GO:0030547!receptor inhibitor activity!0.0371269217025048!10068$GO:0048019!receptor antagonist activity!0.0371269217025048!10068$GO:0015988!energy coupled proton transport, against electrochemical gradient!0.0395199232746048!526$GO:0046677!response to antibiotic!0.0395199232746048!114294$GO:0002237!response to molecule of bacterial origin!0.0395199232746048!929$GO:0016810!hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds!0.0417189232038694!5660;114294$GO:0030545!receptor regulator activity!0.0417189232038694!10068$GO:0004565!beta-galactosidase activity!0.0417189232038694!5660$GO:0004553!hydrolase activity, hydrolyzing O-glycosyl compounds!0.0421027854628203!5660;3073$GO:0042088!T-helper 1 type immune response!0.0426526501935049!10068$GO:0008329!pattern recognition receptor activity!0.0426526501935049!929$GO:0017040!ceramidase activity!0.0426526501935049!5660$GO:0015925!galactosidase activity!0.0426526501935049!5660$GO:0016812!hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides!0.0450267385812422!114294$GO:0051238!sequestering of metal ion!0.0450267385812422!2495$GO:0051707!response to other organism!0.0450267385812422!929;3460$GO:0008344!adult locomotory behavior!0.0468836779009948!3073$GO:0009308!amine metabolic process!0.0468836779009948!55577;114294;3073$GO:0005737!cytoplasm!0.0478754189442239!968;5660;1509;1777;114294;10211;3073;3460;526;1593;10437$GO:0016798!hydrolase activity, acting on glycosyl bonds!0.0478757263869966!5660;3073$GO:0008395!steroid hydroxylase activity!0.0478757263869966!1593$GO:0030149!sphingolipid catabolic process!0.0478757263869966!3073
|gostat_on_coexpression_clusters=GO:0005764!lysosome!1.02017609261701e-06!5660;1509;1777;3073;968;10437$GO:0000323!lytic vacuole!1.02017609261701e-06!5660;1509;1777;3073;968;10437$GO:0005773!vacuole!1.59528494725119e-06!5660;1509;1777;3073;968;10437$GO:0048770!pigment granule!0.00221597962737036!1509;10211;526$GO:0042470!melanosome!0.00221597962737036!1509;10211;526$GO:0006687!glycosphingolipid metabolic process!0.00520441115129939!5660;3073$GO:0007040!lysosome organization and biogenesis!0.00520441115129939!5660;3073$GO:0007033!vacuole organization and biogenesis!0.00553175778217785!5660;3073$GO:0044444!cytoplasmic part!0.00555041723408132!968;5660;1509;1777;114294;10211;3073;3460;526;1593;10437$GO:0006955!immune response!0.00573924456023113!2495;929;10068;11006;3903;2217$GO:0006664!glycolipid metabolic process!0.00692069824548751!5660;3073$GO:0016894!endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters!0.00692069824548751!6039;1777$GO:0042127!regulation of cell proliferation!0.00940463468647706!2495;2014;199;2896$GO:0002376!immune system process!0.00940463468647706!2495;929;10068;11006;3903;2217$GO:0045121!lipid raft!0.0105707968653924!929;10211$GO:0008285!negative regulation of cell proliferation!0.0105707968653924!2495;2014;199$GO:0006952!defense response!0.0105707968653924!199;6039;929;11006$GO:0017001!antibiotic catabolic process!0.0105707968653924!114294$GO:0042007!interleukin-18 binding!0.0105707968653924!10068$GO:0006051!N-acetylmannosamine metabolic process!0.0105707968653924!55577$GO:0008800!beta-lactamase activity!0.0105707968653924!114294$GO:0030655!beta-lactam antibiotic catabolic process!0.0105707968653924!114294$GO:0006050!mannosamine metabolic process!0.0105707968653924!55577$GO:0047749!cholestanetriol 26-monooxygenase activity!0.0105707968653924!1593$GO:0004192!cathepsin D activity!0.0105707968653924!1509$GO:0030653!beta-lactam antibiotic metabolic process!0.0105707968653924!114294$GO:0045127!N-acetylglucosamine kinase activity!0.0105707968653924!55577$GO:0006665!sphingolipid metabolic process!0.0152799311272439!5660;3073$GO:0009384!N-acylmannosamine kinase activity!0.015422426849066!55577$GO:0004098!cerebroside-sulfatase activity!0.015422426849066!5660$GO:0016889!endodeoxyribonuclease activity, producing 3'-phosphomonoesters!0.015422426849066!1777$GO:0006880!intracellular sequestering of iron ion!0.015422426849066!2495$GO:0004557!alpha-galactosidase activity!0.015422426849066!5660$GO:0004531!deoxyribonuclease II activity!0.015422426849066!1777$GO:0019964!interferon-gamma binding!0.015422426849066!3460$GO:0004906!interferon-gamma receptor activity!0.015422426849066!3460$GO:0008043!ferritin complex!0.015422426849066!2495$GO:0051704!multi-organism process!0.0172391392478423!929;3460;2217$GO:0008283!cell proliferation!0.0178054596596289!2495;2014;199;2896$GO:0016023!cytoplasmic membrane-bound vesicle!0.0184179678797753!1509;10211;526$GO:0031988!membrane-bound vesicle!0.0187157340953274!1509;10211;526$GO:0004322!ferroxidase activity!0.0194467036203606!2495$GO:0004336!galactosylceramidase activity!0.0194467036203606!5660$GO:0016724!oxidoreductase activity, oxidizing metal ions, oxygen as acceptor!0.0194467036203606!2495$GO:0019955!cytokine binding!0.0199777085932645!10068;3460$GO:0050884!neuromuscular process controlling posture!0.0232752477158334!3073$GO:0004563!beta-N-acetylhexosaminidase activity!0.0232752477158334!3073$GO:0016999!antibiotic metabolic process!0.0232752477158334!114294$GO:0006689!ganglioside catabolic process!0.0232752477158334!3073$GO:0031410!cytoplasmic vesicle!0.0254486866919106!1509;10211;526$GO:0031982!vesicle!0.0254486866919106!1509;10211;526$GO:0016019!peptidoglycan receptor activity!0.0254486866919106!929$GO:0046479!glycosphingolipid catabolic process!0.0254486866919106!3073$GO:0019961!interferon binding!0.0254486866919106!3460$GO:0004904!interferon receptor activity!0.0254486866919106!3460$GO:0004348!glucosylceramidase activity!0.0254486866919106!5660$GO:0017144!drug metabolic process!0.0299925093723461!114294$GO:0016722!oxidoreductase activity, oxidizing metal ions!0.0337936779888668!2495$GO:0019377!glycolipid catabolic process!0.0337936779888668!3073$GO:0004519!endonuclease activity!0.0342058332122311!6039;1777$GO:0019915!sequestering of lipid!0.0350444381671572!3073$GO:0001573!ganglioside metabolic process!0.0350444381671572!3073$GO:0007628!adult walking behavior!0.0350444381671572!3073$GO:0019864!IgG binding!0.0350444381671572!2217$GO:0016600!flotillin complex!0.0350444381671572!10211$GO:0042834!peptidoglycan binding!0.0371269217025048!929$GO:0004767!sphingomyelin phosphodiesterase activity!0.0371269217025048!5660$GO:0030547!receptor inhibitor activity!0.0371269217025048!10068$GO:0048019!receptor antagonist activity!0.0371269217025048!10068$GO:0015988!energy coupled proton transport, against electrochemical gradient!0.0395199232746048!526$GO:0046677!response to antibiotic!0.0395199232746048!114294$GO:0002237!response to molecule of bacterial origin!0.0395199232746048!929$GO:0016810!hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds!0.0417189232038694!5660;114294$GO:0030545!receptor regulator activity!0.0417189232038694!10068$GO:0004565!beta-galactosidase activity!0.0417189232038694!5660$GO:0004553!hydrolase activity, hydrolyzing O-glycosyl compounds!0.0421027854628203!5660;3073$GO:0042088!T-helper 1 type immune response!0.0426526501935049!10068$GO:0008329!pattern recognition receptor activity!0.0426526501935049!929$GO:0017040!ceramidase activity!0.0426526501935049!5660$GO:0015925!galactosidase activity!0.0426526501935049!5660$GO:0016812!hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides!0.0450267385812422!114294$GO:0051238!sequestering of metal ion!0.0450267385812422!2495$GO:0051707!response to other organism!0.0450267385812422!929;3460$GO:0008344!adult locomotory behavior!0.0468836779009948!3073$GO:0009308!amine metabolic process!0.0468836779009948!55577;114294;3073$GO:0005737!cytoplasm!0.0478754189442239!968;5660;1509;1777;114294;10211;3073;3460;526;1593;10437$GO:0016798!hydrolase activity, acting on glycosyl bonds!0.0478757263869966!5660;3073$GO:0008395!steroid hydroxylase activity!0.0478757263869966!1593$GO:0030149!sphingolipid catabolic process!0.0478757263869966!3073

Revision as of 13:59, 12 September 2012


Full id: C143_Monocytederived_CD14_Macrophage_Dendritic_Basophils_CD14CD16_Osteoblast



Phase1 CAGE Peaks

Hg19::chr10:73576710..73576740,+p1@CU678651
Hg19::chr10:73577061..73577104,-p@chr10:73577061..73577104
-
Hg19::chr10:73579309..73579331,-p5@PSAP
Hg19::chr10:73579559..73579597,+p@chr10:73579559..73579597
+
Hg19::chr10:73581627..73581654,+p@chr10:73581627..73581654
+
Hg19::chr10:73581681..73581767,-p4@PSAP
Hg19::chr10:73581705..73581729,+p@chr10:73581705..73581729
+
Hg19::chr10:73587798..73587813,-p6@PSAP
Hg19::chr10:73587830..73587856,+p@chr10:73587830..73587856
+
Hg19::chr10:73588656..73588715,-p@chr10:73588656..73588715
-
Hg19::chr10:73588784..73588799,-p@chr10:73588784..73588799
-
Hg19::chr10:73588807..73588828,-p@chr10:73588807..73588828
-
Hg19::chr10:73590916..73590954,-p@chr10:73590916..73590954
-
Hg19::chr10:73591593..73591618,+p@chr10:73591593..73591618
+
Hg19::chr10:73591637..73591683,-p@chr10:73591637..73591683
-
Hg19::chr10:73594155..73594181,-p@chr10:73594155..73594181
-
Hg19::chr10:73610996..73611015,-p1@PSAP
Hg19::chr11:117712954..117712981,-p@chr11:117712954..117712981
-
Hg19::chr11:118571152..118571171,+p@chr11:118571152..118571171
+
Hg19::chr11:124933168..124933179,+p4@SLC37A2
Hg19::chr11:124933191..124933208,+p1@SLC37A2
Hg19::chr11:1785100..1785113,-p2@CTSD
Hg19::chr11:58977278..58977289,-p@chr11:58977278..58977289
-
Hg19::chr11:58977419..58977436,-p@chr11:58977419..58977436
-
Hg19::chr11:58977483..58977488,-p@chr11:58977483..58977488
-
Hg19::chr11:58977583..58977594,-p@chr11:58977583..58977594
-
Hg19::chr11:58977674..58977688,-p1@AK024358
Hg19::chr11:58977802..58977807,-p4@AK024358
Hg19::chr11:58977815..58977826,-p3@AK024358
Hg19::chr11:58978340..58978355,-p2@AK024358
Hg19::chr11:58979630..58979649,-p6@MPEG1
Hg19::chr11:58979924..58979941,-p4@MPEG1
Hg19::chr11:61732595..61732605,-p7@FTH1
Hg19::chr11:71709940..71710001,+p1@IL18BP
Hg19::chr14:21249146..21249155,+p4@RNASE6
Hg19::chr15:63414832..63414860,+p6@LACTB
Hg19::chr15:72668733..72668748,-p5@HEXA
Hg19::chr15:72668750..72668798,-p3@HEXA
Hg19::chr16:31393381..31393393,+p@chr16:31393381..31393393
+
Hg19::chr17:21195625..21195644,+p@chr17:21195625..21195644
+
Hg19::chr17:42422662..42422678,+p1@GRN
Hg19::chr17:42427043..42427062,+p@chr17:42427043..42427062
+
Hg19::chr17:42427826..42427839,+p5@GRN
Hg19::chr17:42428048..42428067,+p@chr17:42428048..42428067
+
Hg19::chr17:4638750..4638769,-p@chr17:4638750..4638769
-
Hg19::chr17:7482899..7482979,+p1@CD68
Hg19::chr17:7483236..7483258,-p@chr17:7483236..7483258
-
Hg19::chr17:7483266..7483402,-p@chr17:7483266..7483402
-
Hg19::chr17:7483418..7483445,-p@chr17:7483418..7483445
-
Hg19::chr17:7483451..7483494,-p@chr17:7483451..7483494
-
Hg19::chr17:7483531..7483548,-p@chr17:7483531..7483548
-
Hg19::chr17:7483761..7483825,+p@chr17:7483761..7483825
+
Hg19::chr17:7483828..7483845,-p@chr17:7483828..7483845
-
Hg19::chr18:2890629..2890633,+p@chr18:2890629..2890633
+
Hg19::chr19:10222364..10222370,+p1@P2RY11
Hg19::chr19:12992212..12992237,-p3@DNASE2
Hg19::chr19:18284716..18284723,+p2@IFI30
Hg19::chr19:18285845..18285861,+p@chr19:18285845..18285861
+
Hg19::chr19:18285866..18285913,+p@chr19:18285866..18285913
+
Hg19::chr19:18285955..18285972,+p@chr19:18285955..18285972
+
Hg19::chr19:18285973..18285996,+p@chr19:18285973..18285996
+
Hg19::chr19:18286116..18286156,+p@chr19:18286116..18286156
+
Hg19::chr19:18286406..18286470,+p@chr19:18286406..18286470
+
Hg19::chr19:18287936..18287989,+p@chr19:18287936..18287989
+
Hg19::chr19:18288001..18288020,-p@chr19:18288001..18288020
-
Hg19::chr19:18288651..18288682,+p5@IFI30
Hg19::chr19:18288727..18288790,-p1@CU676849
p1@CU689079
Hg19::chr19:18288828..18288861,+p7@IFI30
Hg19::chr19:18288839..18288881,-p2@CU676849
p2@CU689079
Hg19::chr19:36395335..36395392,+p@chr19:36395335..36395392
+
Hg19::chr19:36395378..36395433,-p@chr19:36395378..36395433
-
Hg19::chr19:36395478..36395489,-p@chr19:36395478..36395489
-
Hg19::chr19:36395505..36395529,-p@chr19:36395505..36395529
-
Hg19::chr19:36398154..36398173,-p@chr19:36398154..36398173
-
Hg19::chr19:36398391..36398405,-p@chr19:36398391..36398405
-
Hg19::chr19:36398412..36398445,-p@chr19:36398412..36398445
-
Hg19::chr19:48828539..48828550,+p4@EMP3
Hg19::chr19:49469949..49469978,+p@chr19:49469949..49469978
+
Hg19::chr19:50015936..50015981,+p3@FCGRT
Hg19::chr19:54872562..54872573,-p12@LAIR1
Hg19::chr19:55174400..55174461,+p1@LILRB4
Hg19::chr19:55177293..55177307,+p2@LILRB4
Hg19::chr1:111434009..111434022,+p1@AB529033
Hg19::chr1:161187774..161187799,+p@chr1:161187774..161187799
+
Hg19::chr1:161187824..161187847,+p@chr1:161187824..161187847
+
Hg19::chr1:161188022..161188042,+p@chr1:161188022..161188042
+
Hg19::chr1:161188686..161188721,+p@chr1:161188686..161188721
+
Hg19::chr1:161188746..161188758,+p@chr1:161188746..161188758
+
Hg19::chr1:161188763..161188824,+p@chr1:161188763..161188824
+
Hg19::chr1:161188826..161188842,+p@chr1:161188826..161188842
+
Hg19::chr1:161188869..161188889,+p@chr1:161188869..161188889
+
Hg19::chr1:31211779..31211826,+p@chr1:31211779..31211826
+
Hg19::chr1:31215379..31215390,-p@chr1:31215379..31215390
-
Hg19::chr1:36767139..36767159,+p@chr1:36767139..36767159
+
Hg19::chr20:39317067..39317115,-p1@AB464740
Hg19::chr21:34804479..34804505,+p7@IFNGR2
Hg19::chr21:46323305..46323316,-p@chr21:46323305..46323316
-
Hg19::chr21:46323370..46323382,-p@chr21:46323370..46323382
-
Hg19::chr2:219646666..219646681,+p5@CYP27A1
Hg19::chr2:71295766..71295788,+p1@NAGK
Hg19::chr3:112269078..112269100,-p@chr3:112269078..112269100
-
Hg19::chr3:126675882..126675901,+p2@CHCHD6
Hg19::chr3:136651075..136651077,+p@chr3:136651075..136651077
+
Hg19::chr3:46243584..46243605,-p@chr3:46243584..46243605
-
Hg19::chr3:46243618..46243632,-p@chr3:46243618..46243632
-
Hg19::chr3:46244481..46244493,-p@chr3:46244481..46244493
-
Hg19::chr3:46244558..46244569,-p@chr3:46244558..46244569
-
Hg19::chr5:119593640..119593641,+p@chr5:119593640..119593641
+
Hg19::chr5:139976080..139976122,+p@chr5:139976080..139976122
+
Hg19::chr5:140011978..140011999,-p@chr5:140011978..140011999
-
Hg19::chr5:140012086..140012110,-p6@CD14
Hg19::chr5:65017887..65017901,-p2@SGTB
Hg19::chr6:30710968..30710978,-p22@FLOT1
Hg19::chr6:31322987..31323005,-p13@HLA-B
Hg19::chr6:31584212..31584228,+p6@AIF1
Hg19::chr8:11721825..11721827,-p@chr8:11721825..11721827
-
Hg19::chr8:11723522..11723526,-p@chr8:11723522..11723526
-
Hg19::chr8:15997253..15997257,-p@chr8:15997253..15997257
-
Hg19::chr8:20067907..20067920,+p2@ATP6V1B2
Hg19::chrX:37664265..37664282,+p@chrX:37664265..37664282
+
Hg19::chrX:37664331..37664352,+p@chrX:37664331..37664352
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

p.valueFDRnGenesnPathwayName
1.14448180130357e-077.24456980225158e-055121Lysosome (KEGG):04142
0.0001260282790224710.0398879503106125511Signaling in Immune system (Reactome):REACT_6900



Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005764lysosome1.02017609261701e-06
GO:0000323lytic vacuole1.02017609261701e-06
GO:0005773vacuole1.59528494725119e-06
GO:0048770pigment granule0.00221597962737036
GO:0042470melanosome0.00221597962737036
GO:0006687glycosphingolipid metabolic process0.00520441115129939
GO:0007040lysosome organization and biogenesis0.00520441115129939
GO:0007033vacuole organization and biogenesis0.00553175778217785
GO:0044444cytoplasmic part0.00555041723408132
GO:0006955immune response0.00573924456023113
GO:0006664glycolipid metabolic process0.00692069824548751
GO:0016894endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters0.00692069824548751
GO:0042127regulation of cell proliferation0.00940463468647706
GO:0002376immune system process0.00940463468647706
GO:0045121lipid raft0.0105707968653924
GO:0008285negative regulation of cell proliferation0.0105707968653924
GO:0006952defense response0.0105707968653924
GO:0017001antibiotic catabolic process0.0105707968653924
GO:0042007interleukin-18 binding0.0105707968653924
GO:0006051N-acetylmannosamine metabolic process0.0105707968653924
GO:0008800beta-lactamase activity0.0105707968653924
GO:0030655beta-lactam antibiotic catabolic process0.0105707968653924
GO:0006050mannosamine metabolic process0.0105707968653924
GO:0047749cholestanetriol 26-monooxygenase activity0.0105707968653924
GO:0004192cathepsin D activity0.0105707968653924
GO:0030653beta-lactam antibiotic metabolic process0.0105707968653924
GO:0045127N-acetylglucosamine kinase activity0.0105707968653924
GO:0006665sphingolipid metabolic process0.0152799311272439
GO:0009384N-acylmannosamine kinase activity0.015422426849066
GO:0004098cerebroside-sulfatase activity0.015422426849066
GO:0016889endodeoxyribonuclease activity, producing 3'-phosphomonoesters0.015422426849066
GO:0006880intracellular sequestering of iron ion0.015422426849066
GO:0004557alpha-galactosidase activity0.015422426849066
GO:0004531deoxyribonuclease II activity0.015422426849066
GO:0019964interferon-gamma binding0.015422426849066
GO:0004906interferon-gamma receptor activity0.015422426849066
GO:0008043ferritin complex0.015422426849066
GO:0051704multi-organism process0.0172391392478423
GO:0008283cell proliferation0.0178054596596289
GO:0016023cytoplasmic membrane-bound vesicle0.0184179678797753
GO:0031988membrane-bound vesicle0.0187157340953274
GO:0004322ferroxidase activity0.0194467036203606
GO:0004336galactosylceramidase activity0.0194467036203606
GO:0016724oxidoreductase activity, oxidizing metal ions, oxygen as acceptor0.0194467036203606
GO:0019955cytokine binding0.0199777085932645
GO:0050884neuromuscular process controlling posture0.0232752477158334
GO:0004563beta-N-acetylhexosaminidase activity0.0232752477158334
GO:0016999antibiotic metabolic process0.0232752477158334
GO:0006689ganglioside catabolic process0.0232752477158334
GO:0031410cytoplasmic vesicle0.0254486866919106
GO:0031982vesicle0.0254486866919106
GO:0016019peptidoglycan receptor activity0.0254486866919106
GO:0046479glycosphingolipid catabolic process0.0254486866919106
GO:0019961interferon binding0.0254486866919106
GO:0004904interferon receptor activity0.0254486866919106
GO:0004348glucosylceramidase activity0.0254486866919106
GO:0017144drug metabolic process0.0299925093723461
GO:0016722oxidoreductase activity, oxidizing metal ions0.0337936779888668
GO:0019377glycolipid catabolic process0.0337936779888668
GO:0004519endonuclease activity0.0342058332122311
GO:0019915sequestering of lipid0.0350444381671572
GO:0001573ganglioside metabolic process0.0350444381671572
GO:0007628adult walking behavior0.0350444381671572
GO:0019864IgG binding0.0350444381671572
GO:0016600flotillin complex0.0350444381671572
GO:0042834peptidoglycan binding0.0371269217025048
GO:0004767sphingomyelin phosphodiesterase activity0.0371269217025048
GO:0030547receptor inhibitor activity0.0371269217025048
GO:0048019receptor antagonist activity0.0371269217025048
GO:0015988energy coupled proton transport, against electrochemical gradient0.0395199232746048
GO:0046677response to antibiotic0.0395199232746048
GO:0002237response to molecule of bacterial origin0.0395199232746048
GO:0016810hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds0.0417189232038694
GO:0030545receptor regulator activity0.0417189232038694
GO:0004565beta-galactosidase activity0.0417189232038694
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds0.0421027854628203
GO:0042088T-helper 1 type immune response0.0426526501935049
GO:0008329pattern recognition receptor activity0.0426526501935049
GO:0017040ceramidase activity0.0426526501935049
GO:0015925galactosidase activity0.0426526501935049
GO:0016812hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides0.0450267385812422
GO:0051238sequestering of metal ion0.0450267385812422
GO:0051707response to other organism0.0450267385812422
GO:0008344adult locomotory behavior0.0468836779009948
GO:0009308amine metabolic process0.0468836779009948
GO:0005737cytoplasm0.0478754189442239
GO:0016798hydrolase activity, acting on glycosyl bonds0.0478757263869966
GO:0008395steroid hydroxylase activity0.0478757263869966
GO:0030149sphingolipid catabolic process0.0478757263869966



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
hemolymphoid system3.74e-32112
hematopoietic system4.49e-31102
blood island4.49e-31102
bone marrow9.17e-2980
immune system7.54e-27115
bone element7.79e-2486
lateral plate mesoderm2.52e-21216
skeletal element2.13e-19101
skeletal system2.13e-19101
musculoskeletal system1.98e-13167
adult organism5.99e-12115
mesoderm5.53e-11448
mesoderm-derived structure5.53e-11448
presumptive mesoderm5.53e-11448
anatomical system1.15e-08625
anatomical group1.34e-08626
organ1.27e-07511
multi-cellular organism1.56e-07659


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
BCL11A#53335102.344583066413810.01075108582752360.0396788696282684



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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