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MacroAPE 1083:TTGGCTCGGC,motif500: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;76.293;124.733;67.816;942.158!2;96.88;96.88;36.33;980.91!3;49.651;100.513;977.277;83.559!4;83.559;85.981;978.488;62.972!5;23.009;1049.937;60...")
 
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5;0.21554!10827-111C8;0.26634!10789-110H6;0.0667019!10828-111C9;0.0586408!10788-110H5;0.0778303!10792-110H9;0.112719!10765-110E9;0.0348636!10829-111D1;0.302984!10830-111D2;0.135961!10831-111D3;0.137266!10832-111D4;0.079527!10833-111D5;0.289067!10764-110E8;0.177703!10770-110F5;0.309431!10399-106A3;0.0980499!10400-106A4;0.338697!10405-106A9;0.395207!10834-111D6;0.32258!10835-111D7;0.207592!10836-111D8;0.242093!10837-111D9;0.448628!10699-109G6;0.0810068!10802-111A1;0.102251!10796-110I4;0.334621!10010-101C1;0.269274!10810-111A9;0.485995!10421-106C7;0.600992!10708-109H6;0.192338!12235-129G3;0.417959!12236-129G4;0.731906!12237-129G5;0.108918!10167-103B5;0.127186!10151-102I7;0.420989!10428-106D5;0.340631!10795-110I3;0.789875!10805-111A4;0.108623!10052-101G7;0.994166!10189-103D9;0.214248!10589-108D4;0.706756!10425-106D2;0.487535!10427-106D4;0.72466!10702-109G9;0.101611!10432-106D9;0.520903!10496-107C1;0.536267!10718-109I7;0.0874171!10011-101C2;0.264532!10053-101G8;0.663667!10686-109F2;0.409671!10084-102B3;0.426823!10012-101C3;0.243698!10085-102B4;0.346704!10482-107A5;0.317746!10419-106C5;0.656786!10080-102A8;0.595211!10760-110E4;0.227443!10709-109H7;0.0509063!10710-109H8;0.244153!10703-109H1;0.532066!10719-109I8;0.85575!10642-109A3;0.489784!10177-103C6;0.407497!10164-103B2;0.387895!10173-103C2;0.458726!10166-103B4;0.54561!10083-102B2;0.323954!10188-103D8;0.239228!10552-107I3;0.411837!10553-107I4;0.105303!10013-101C4;0.466278!10536-107G5;0.423228!10618-108G6;0.807563!10423-106C9;0.866464!10785-110H2;0.77322!12238-129G6;0.834051!12239-129G7;0.565954!12240-129G8;0.176551!10416-106C2;0.966846!10801-110I9;0.0765402!10766-110F1;0.0951427!10824-111C5;0.0968995!10825-111C6;0.102738!10826-111C7;0.112542!10454-106G4;0.106487!10409-106B4;0.0519554!10638-108I8;0.0888881!10636-108I6;0.28282!10513-107D9;0.360164!10420-106C6;0.247305!10082-102B1;0.545914!10014-101C5;0.47128!10070-101I7;0.662631!10452-106G2;0.495984!10453-106G3;0.314304!10449-106F8;0.27155!10042-101F6;0.30507!10069-101I6;0.188603!10193-103E4;0.379641!10631-108I1;0.360072!10438-106E6;0.128617!10488-107B2;0.0262406!10196-103E7;0.224724!10071-101I8;0.567521!10071-101I8;0.595501!10041-101F5;0.443449!10451-106G1;0.415495!10450-106F9;0.279211!10604-108F1;0.66819!10605-108F2;0.88344!10606-108F3;0.469925!10603-108E9;0.910454!10497-107C2;0.905179!10448-106F7;0.593157!10643-109A4;0.721604!10426-106D3;0.622851!10431-106D8;0.483531!10197-103E8;0.734582!10443-106F2;0.614846!10815-111B5;0.39944!10816-111B6;0.331199!10817-111B7;0.418635!10015-101C6;0.362687!10410-106B5;0.620998!10054-101G9;0.895596!10758-110E2;0.404147!10711-109H9;0.647751!10040-101F4;0.790131!10470-106I2;0.329888!10415-106C1;0.793863!10198-103E9;0.182569!10614-108G2;0.429132!10612-108F9;0.188948!10549-107H9;0.143847!10615-108G3;0.516307!10487-107B1;0.726888!10433-106E1;0.0517836!10688-109F4;0.380422!10444-106F3;0.522003!10444-106F3;0.0164722!10485-107A8;0.0438558!10413-106B8;0.826206!10175-103C4;0.685768!10161-103A8;0.397693!12131-128D7;0.239706!10624-108H3;0.732091!10712-109I1;0.0461965!10205-103F7;0.176498!10206-103F8;0.5433!10207-103F9;0.422216!10050-101G5;0.593268!10051-101G6;0.126092!10016-101C7;0.34758!10046-101G1;0.363835!10778-110G4;0.17172!10633-108I3;0.26807!10818-111B8;0.98351!10819-111B9;0.575233!10820-111C1;0.570699!10484-107A7;0.606759!10808-111A7;0.59625!10169-103B7;0.124962!10153-102I9;0.502806!13425-144D5;0.324976!13433-144E4;0.524024!13437-144E8;0.486797!11904-125F5;0.763112!11905-125F6;0.437121!10039-101F3;0.81398!10791-110H8;0.338384!10017-101C8;0.461716!10045-101F9;0.83689!10509-107D5;0.183825!10839-111E2;0.32552!10692-109F8;0.106881!10079-102A7;0.795381!10078-102A6;0.450198!10721-110A1;0.624062!10569-108B2;0.571713!10570-108B3;0.754228!10571-108B4;0.813618!10647-109A8;0.64884!10752-110D5;0.0669198!10782-110G8;0.3097!10726-110A6;0.459615!10018-101C9;0.420564!10086-102B5;0.818737!10182-103D2;0.482876!10165-103B3;0.236702!10499-107C4;0.293667!10408-106B3;0.125235!10019-101D1;0.156899!10068-101I5;0.436403!10075-102A3;0.518897!10077-102A5;0.538982!10727-110A7;0.595624!10775-110G1;0.187661!10412-106B7;0.192336!12231-129F8;0.183346!12232-129F9;0.802115!12233-129G1;0.447415!12234-129G2;0.634844!10414-106B9;0.92875!10170-103B8;0.437639!10183-103D3;0.471413!10150-102I6;0.398969!10174-103C3;0.360981!10155-103A2;0.270295!10038-101F2;0.301121!10838-111E1;0.224986!10759-110E3;0.870181!10514-107E1;0.550841!10465-106H6;0.795036!10691-109F7;0.836191!10843-111E6;0.148307!10844-111E7;0.956068!11747-123G1;0.614242!11748-123G2;0.993811!11749-123G3;0.820118!11750-123G4;0.974942!11751-123G5;0.430142!11840-124H4;0.697878!11752-123G6;0.752727!11753-123G7;0.999376!11754-123G8;0.180133!11755-123G9;0.767224!11756-123H1;0.730013!11833-124G6;0.841964!11760-123H5;0.96204!11836-124G9;0.521885!11758-123H3;0.723927!11835-124G8;0.580977!11762-123H7;0.298283!11838-124H2;0.437272!11757-123H2;0.464214!11759-123H4;0.378263!11761-123H6;0.576137!11842-124H6;0.331824!11837-124H1;0.30809!10568-108B1;0.327573!13230-141I8;0.591082!13231-141I9;0.715061!10696-109G3;0.783805!10493-107B7;0.137928!10494-107B8;0.591705!10850-111F4;0.86453!10851-111F5;0.340077!10852-111F6;0.583025!10853-111F7;0.806169!10854-111F8;0.17147!10855-111F9;0.897167!10856-111G1;0.350978!10847-111F1;0.556219!10846-111E9;0.635366!10848-111F2;0.844234!10845-111E8;0.384259!10857-111G2;0.993295!10858-111G3;0.842096!10156-103A3;0.44847!11901-125F2;0.344439!11902-125F3;0.319661!11903-125F4;0.49383!10689-109F5;0.206671!10648-109A9;0.479387!10784-110H1;0.28554!10744-110C6;0.581397!10772-110F7;0.133347!10474-106I6;0.469774!10600-108E6;0.0200243!10684-109E9;0.260945!12226-129F3;0.732128!12227-129F4;0.223724!10508-107D4;0.773335!10539-107G8;0.803658!10607-108F4;0.535962!10555-107I6;0.157556!10774-110F9;0.745497!10637-108I7;0.427859!10663-109C6;0.48743!10728-110A8;0.247258!10729-110A9;0.399277!10430-106D7;0.356608!10730-110B1;0.432605!10813-111B3;0.387684!10812-111B2;0.201823!10037-101F1;0.54854!10172-103C1;0.318369!10163-103B1;0.475636!10076-102A4;0.276423!10073-102A1;0.358309!10036-101E9;0.373545!10195-103E6;0.26948!10277-104E7;0.327013!10434-106E2;0.175388!10550-107I1;0.384897!10545-107H5;0.403099!10544-107H4;0.0821929!10704-109H2;0.353163!10510-107D6;0.214527!10558-107I9;0.569672!10020-101D2;0.788279!10732-110B3;0.553989!10049-101G4;0.113731!10698-109G5;0.399637!10437-106E5;0.753467!10417-106C3;0.137476!10035-101E8;0.537818!10171-103B9;0.329038!10157-103A4;0.437194!10034-101E7;0.347669!10072-101I9;0.295127!10199-103F1;0.548974!10200-103F2;0.606438!10697-109G4;0.545109!10723-110A3;0.0152973!10179-103C8;0.0705056!10160-103A7;0.483924!10180-103C9;0.576722!10162-103A9;0.854394!10021-101D3;0.939916!10840-111E3;0.806365!10706-109H4;0.0449316!10033-101E6;0.662622!10032-101E5;0.306366!10490-107B4;0.286002!10439-106E7;0.494632!10022-101D4;0.362882!10176-103C5;0.698487!10469-106I1;0.371524!10067-101I4;0.621503!10411-106B6;0.373457!10471-106I3;0.421822!10030-101E3;0.169125!10475-106I7;0.428673!10787-110H4;0.484236!10477-106I9;0.352528!10695-109G2;0.582079!11771-123I7;0.038165!11772-123I8;0.347012!11773-123I9;0.400588!10093-102C3;0.101268!10442-106F1;0.708099!10442-106F1;0.531901!10201-103F3;0.54541!10639-108I9;0.754601!11843-124H7;0.823263!11841-124H5;0.923925!10693-109F9;0.502499!10436-106E4;0.868374!10483-107A6;0.449956!10282-104F3;0.311542!10023-101D5;0.835765!10066-101I3;0.592386!10065-101I2;0.40441!10800-110I8;0.303785!10610-108F7;0.947369!10841-111E4;0.22417!10541-107H1;0.457251!10842-111E5;0.420074!10562-108A4;0.416867!10024-101D6;0.418791!10064-101I1;0.977458!10609-108F6;0.719149!10048-101G3;0.821141!10781-110G7;0.604347!10181-103D1;0.966331!10159-103A6;0.249498!10056-101H2;0.25591!10737-110B8;0.169153!10025-101D7;0.175216!10044-101F8;0.406192!10424-106D1;0.469089!10463-106H4;0.114579!10616-108G4;0.302598!10486-107A9;0.214007!10062-101H8;0.11467!10202-103F4;0.272256!10158-103A5;0.735438!10441-106E9;0.216566!10031-101E4;0.790878!10063-101H9;0.25903!10063-101H9;0.376781!11763-123H8;0.831974!11765-123I1;0.548039!11768-123I4;0.848415!10807-111A6;0.458124!10790-110H7;0.506118!10798-110I6;0.806473!10786-110H3;0.497988!10591-108D6;0.537963!10593-108D8;0.804454!10590-108D5;0.905614!10026-101D8;0.659438!10096-102C6;0.911974!10168-103B6;0.462769!10154-103A1;0.371572!10209-103G2;0.284133!10061-101H7;0.623332!10027-101D9;0.357351!10043-101F7;0.331094!10783-110G9;0.988221!10028-101E1;0.652536!10060-101H6;0.892414!10203-103F5;0.181077!10059-101H5;0.634732!10047-101G2;0.450703!10029-101E2;0.801855!10058-101H4;0.755114!10418-106C4;0.439694!10492-107B6;0.889536!10694-109G1;0.451901!10797-110I5;0.00533288!10057-101H3;0.11619!10100-102D1;0.306072!10055-101H1;0.546976!10204-103F6;0.277209!10191-103E2;0.640471!10563-108A5;0.898867
|name=TTGGCTCGGC,motif500,CNhs11766,T:1211.0(28.66%),B:15218.3(20.93%),P:1e-32
|name=TTGGCTCGGC,motif500,CNhs11766,T:1211.0(28.66%),B:15218.3(20.93%),P:1e-32
|tomtom_result=HAP3#MA0314.1;5;0.00159999;0.761595;0.738371;10;TTGGCTCGGC;TCTGATTGGTTCAGA;+!TLX1::NFIC#MA0119.1;0;0.00193089;0.919103;0.738371;10;TTGGCTCGGC;TTGGCATGGTGCCA;-!MAC1#MA0326.1;0;0.00260753;1.24118;0.738371;8;TTGGCTCGGC;TTTGCTCA;+!NFIC#MA0161.1;0;0.00421659;2.0071;0.738371;6;TTGGCTCGGC;TTGGCA;+!BAS1#MA0278.1;5;0.00471571;2.24468;0.738371;10;TTGGCTCGGC;TTGACTTGACTCTGGCTGTGC;-!CRZ1#MA0285.1;0;0.00532883;2.53653;0.738371;9;TTGGCTCGGC;GTGGCTTAG;-!IME1#MA0320.1;-4;0.00543057;2.58495;0.738371;6;TTGGCTCGGC;CTCGGCGG;-!HAP2#MA0313.1;0;0.0063883;3.04083;0.760016;5;TTGGCTCGGC;TTGGT;+!NFYA#MA0060.1;7;0.00727726;3.46398;0.769578;9;TTGGCTCGGC;GCGCTGATTGGCTGAG;-!Zfx#MA0146.1;1;0.0128277;6.106;0.999747;10;TTGGCTCGGC;GGGGCCGAGGCCTG;+!NFE2L2#MA0150.1;0;0.0132443;6.30428;0.999747;10;TTGGCTCGGC;ATGACTCAGCA;+!YDR026C#MA0421.1;0;0.0161688;7.69635;0.999747;10;TTGGCTCGGC;TTTACCCGGC;+!OPI1#MA0349.1;-1;0.0184824;8.7976;0.999747;7;TTGGCTCGGC;CGGTTCG;-!E2F1#MA0024.1;1;0.018982;9.03545;0.999747;7;TTGGCTCGGC;TTTGGCGC;+!ARO80#MA0273.1;3;0.0191143;9.09839;0.999747;10;TTGGCTCGGC;GATAATTCTCGGCAAGTATGT;+
}}
}}

Latest revision as of 12:16, 7 September 2012

Full Name: TTGGCTCGGC,motif500,CNhs11766,T:1211.0(28.66%),B:15218.3(20.93%),P:1e-32

Motif matrix
POACGT
176.293124.73367.816942.158
296.8896.8836.33980.91
349.651100.513977.27783.559
483.55985.981978.48862.972
523.0091049.93760.5577.504
652.07387.19272.66999.075
787.192880.397144.10999.302
8104.14696.88943.36966.605
932.69788.4031022.08467.816
1085.981919.149155.00850.862

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
HAP3#MA0314.150.001599990.7615950.73837110TTGGCTCGGCTCTGATTGGTTCAGA+
TLX1::NFIC#MA0119.100.001930890.9191030.73837110TTGGCTCGGCTTGGCATGGTGCCA-
MAC1#MA0326.100.002607531.241180.7383718TTGGCTCGGCTTTGCTCA+
NFIC#MA0161.100.004216592.00710.7383716TTGGCTCGGCTTGGCA+
BAS1#MA0278.150.004715712.244680.73837110TTGGCTCGGCTTGACTTGACTCTGGCTGTGC-
CRZ1#MA0285.100.005328832.536530.7383719TTGGCTCGGCGTGGCTTAG-
IME1#MA0320.1-40.005430572.584950.7383716TTGGCTCGGCCTCGGCGG-
HAP2#MA0313.100.00638833.040830.7600165TTGGCTCGGCTTGGT+
NFYA#MA0060.170.007277263.463980.7695789TTGGCTCGGCGCGCTGATTGGCTGAG-
Zfx#MA0146.110.01282776.1060.99974710TTGGCTCGGCGGGGCCGAGGCCTG+
NFE2L2#MA0150.100.01324436.304280.99974710TTGGCTCGGCATGACTCAGCA+
YDR026C#MA0421.100.01616887.696350.99974710TTGGCTCGGCTTTACCCGGC+
OPI1#MA0349.1-10.01848248.79760.9997477TTGGCTCGGCCGGTTCG-
E2F1#MA0024.110.0189829.035450.9997477TTGGCTCGGCTTTGGCGC+
ARO80#MA0273.130.01911439.098390.99974710TTGGCTCGGCGATAATTCTCGGCAAGTATGT+
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