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MacroAPE 1083:10-YGAGTCHYTD: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;8.822;151.177;80.2;160.801!2;22.055;23.258;332.83;22.857!3;257.843;60.15;25.664;57.343!4;14.436;20.852;311.176;54.536!5;21.654;120.701;14.03...")
 
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464-106H5;0.594757!10827-111C8;0.794447!10789-110H6;0.941149!10828-111C9;0.920799!10788-110H5;0.934333!10792-110H9;0.941503!10765-110E9;0.789319!10829-111D1;0.280882!10830-111D2;0.782222!10831-111D3;0.566479!10832-111D4;0.897482!10833-111D5;0.713184!10764-110E8;0.844005!10770-110F5;0.637421!10399-106A3;0.894927!10400-106A4;0.945785!10405-106A9;0.79303!10834-111D6;0.946466!10835-111D7;0.96646!10836-111D8;0.525296!10837-111D9;0.268801!10699-109G6;0.73629!10802-111A1;0.948864!10796-110I4;0.518652!10010-101C1;0.765212!10810-111A9;0.424!10421-106C7;0.161853!10708-109H6;0.949136!12235-129G3;0.84336!12236-129G4;0.896683!12237-129G5;0.272629!10167-103B5;0.816043!10151-102I7;0.634961!10428-106D5;0.759981!10795-110I3;0.556199!10805-111A4;0.474372!10052-101G7;0.501848!10189-103D9;0.643805!10589-108D4;0.896184!10425-106D2;0.201612!10427-106D4;0.947539!10702-109G9;0.926366!10432-106D9;0.43346!10496-107C1;0.617657!10718-109I7;0.19568!10011-101C2;0.417175!10053-101G8;0.636994!10686-109F2;0.0487098!10084-102B3;0.470665!10012-101C3;0.701091!10085-102B4;0.887515!10482-107A5;0.794209!10419-106C5;0.433769!10080-102A8;0.433843!10760-110E4;0.65262!10709-109H7;0.528387!10710-109H8;0.472998!10703-109H1;0.338278!10719-109I8;0.755844!10642-109A3;0.899277!10177-103C6;0.452004!10164-103B2;0.719336!10173-103C2;0.512089!10166-103B4;0.927535!10083-102B2;0.770785!10188-103D8;0.816675!10552-107I3;0.78593!10553-107I4;0.569993!10013-101C4;0.140538!10536-107G5;0.930127!10618-108G6;0.781283!10423-106C9;0.499946!10785-110H2;0.428852!12238-129G6;0.737461!12239-129G7;0.609488!12240-129G8;0.430138!10416-106C2;0.729221!10801-110I9;0.527784!10766-110F1;0.900159!10824-111C5;0.628182!10825-111C6;0.445407!10826-111C7;0.469899!10454-106G4;0.45905!10409-106B4;0.353414!10638-108I8;0.754252!10636-108I6;0.464898!10513-107D9;0.855352!10420-106C6;0.40949!10082-102B1;0.904367!10014-101C5;0.346509!10070-101I7;0.859713!10452-106G2;0.834771!10453-106G3;0.549867!10449-106F8;0.229731!10042-101F6;0.261186!10069-101I6;0.900341!10193-103E4;0.923582!10631-108I1;0.757167!10438-106E6;0.410277!10488-107B2;0.645581!10196-103E7;0.33309!10071-101I8;0.561577!10071-101I8;0.975514!10041-101F5;0.733509!10451-106G1;0.277091!10450-106F9;0.676825!10604-108F1;0.743763!10605-108F2;0.664682!10606-108F3;0.463912!10603-108E9;0.422232!10497-107C2;0.543543!10448-106F7;0.524527!10643-109A4;0.580039!10426-106D3;0.301178!10431-106D8;0.536838!10197-103E8;0.728277!10443-106F2;0.556675!10815-111B5;0.497894!10816-111B6;0.626251!10817-111B7;0.673578!10015-101C6;0.658055!10410-106B5;0.843073!10054-101G9;0.34418!10758-110E2;0.910169!10711-109H9;0.207579!10040-101F4;0.92365!10470-106I2;0.673109!10415-106C1;0.65266!10198-103E9;0.766317!10614-108G2;0.850116!10612-108F9;0.773341!10549-107H9;0.615018!10615-108G3;0.178565!10487-107B1;0.102267!10433-106E1;0.4005!10688-109F4;0.877238!10444-106F3;0.46859!10444-106F3;0.984775!10485-107A8;0.719175!10413-106B8;0.326132!10175-103C4;0.444076!10161-103A8;0.935279!12131-128D7;0.963194!10624-108H3;0.585061!10712-109I1;0.634816!10205-103F7;0.72853!10206-103F8;0.665834!10207-103F9;0.940885!10050-101G5;0.179259!10051-101G6;0.890616!10016-101C7;0.774861!10046-101G1;0.930395!10778-110G4;0.628074!10633-108I3;0.417472!10818-111B8;0.983213!10819-111B9;0.107963!10820-111C1;0.119804!10484-107A7;0.107839!10808-111A7;0.291079!10169-103B7;0.689661!10153-102I9;0.833439!13425-144D5;0.882689!13433-144E4;0.530276!13437-144E8;0.639492!11904-125F5;0.64018!11905-125F6;0.0899611!10039-101F3;0.0161437!10791-110H8;0.682269!10017-101C8;0.201423!10045-101F9;0.645223!10509-107D5;0.877682!10839-111E2;0.97853!10692-109F8;0.962908!10079-102A7;0.794292!10078-102A6;0.997642!10721-110A1;0.920572!10569-108B2;0.630246!10570-108B3;0.845137!10571-108B4;0.709403!10647-109A8;0.72774!10752-110D5;0.152321!10782-110G8;0.220806!10726-110A6;0.836177!10018-101C9;0.637562!10086-102B5;0.697416!10182-103D2;0.996499!10165-103B3;0.657776!10499-107C4;0.927736!10408-106B3;0.519801!10019-101D1;0.600192!10068-101I5;0.422846!10075-102A3;0.728847!10077-102A5;0.659972!10727-110A7;0.728762!10775-110G1;0.792099!10412-106B7;0.0397798!12231-129F8;0.499828!12232-129F9;0.293716!12233-129G1;0.498384!12234-129G2;0.371931!10414-106B9;0.70016!10170-103B8;0.186907!10183-103D3;0.656363!10150-102I6;0.764145!10174-103C3;0.877118!10155-103A2;0.739751!10038-101F2;0.890714!10838-111E1;0.668177!10759-110E3;0.953501!10514-107E1;0.0883474!10465-106H6;0.570884!10691-109F7;0.585618!10843-111E6;0.404076!10844-111E7;0.712983!11747-123G1;0.953814!11748-123G2;0.688537!11749-123G3;0.178284!11750-123G4;0.458611!11751-123G5;0.438464!11840-124H4;0.34305!11752-123G6;0.529077!11753-123G7;0.520258!11754-123G8;0.45407!11755-123G9;0.342201!11756-123H1;0.391569!11833-124G6;0.697471!11760-123H5;0.178954!11836-124G9;0.726334!11758-123H3;0.548133!11835-124G8;0.419998!11762-123H7;0.613582!11838-124H2;0.470494!11757-123H2;0.228993!11759-123H4;0.666362!11761-123H6;0.701528!11842-124H6;0.52075!11837-124H1;0.974551!10568-108B1;0.463834!13230-141I8;0.88706!13231-141I9;0.938708!10696-109G3;0.777215!10493-107B7;0.934837!10494-107B8;0.332397!10850-111F4;0.00443948!10851-111F5;0.0643443!10852-111F6;0.159761!10853-111F7;0.025168!10854-111F8;0.0104096!10855-111F9;0.262665!10856-111G1;0.753207!10847-111F1;0.01652!10846-111E9;0.026662!10848-111F2;0.312933!10845-111E8;0.341975!10857-111G2;0.205317!10858-111G3;0.142288!10156-103A3;0.106319!11901-125F2;0.798775!11902-125F3;0.537297!11903-125F4;0.768417!10689-109F5;0.645204!10648-109A9;0.158156!10784-110H1;0.692386!10744-110C6;0.592602!10772-110F7;0.859463!10474-106I6;0.403755!10600-108E6;0.53164!10684-109E9;0.302578!12226-129F3;0.0580876!12227-129F4;0.93694!10508-107D4;0.153405!10539-107G8;0.46734!10607-108F4;0.78688!10555-107I6;0.127553!10774-110F9;0.495096!10637-108I7;0.257441!10663-109C6;0.227635!10728-110A8;0.419509!10729-110A9;0.76291!10430-106D7;0.464212!10730-110B1;0.631005!10813-111B3;0.532116!10812-111B2;0.84166!10037-101F1;0.0073141!10172-103C1;0.744054!10163-103B1;0.73971!10076-102A4;0.903174!10073-102A1;0.718009!10036-101E9;0.787579!10195-103E6;0.891205!10277-104E7;0.69252!10434-106E2;0.993628!10550-107I1;0.799533!10545-107H5;0.880059!10544-107H4;0.679301!10704-109H2;0.86807!10510-107D6;0.343691!10558-107I9;0.898544!10020-101D2;0.509406!10732-110B3;0.903482!10049-101G4;0.654316!10698-109G5;0.625592!10437-106E5;0.567806!10417-106C3;0.893319!10035-101E8;0.606624!10171-103B9;0.859915!10157-103A4;0.825118!10034-101E7;0.842799!10072-101I9;0.879247!10199-103F1;0.951804!10200-103F2;0.884331!10697-109G4;0.804335!10723-110A3;0.41508!10179-103C8;0.615459!10160-103A7;0.694764!10180-103C9;0.360994!10162-103A9;0.371953!10021-101D3;0.283326!10840-111E3;0.476002!10706-109H4;0.198369!10033-101E6;0.221988!10032-101E5;0.861717!10490-107B4;0.895783!10439-106E7;0.80593!10022-101D4;0.931105!10176-103C5;0.94882!10469-106I1;0.762603!10067-101I4;0.827548!10411-106B6;0.922697!10471-106I3;0.0208806!10030-101E3;0.205212!10475-106I7;0.730684!10787-110H4;0.72128!10477-106I9;0.819317!10695-109G2;0.710803!11771-123I7;0.685908!11772-123I8;0.884484!11773-123I9;0.215105!10093-102C3;0.562395!10442-106F1;0.678008!10442-106F1;0.0217513!10201-103F3;0.0313906!10639-108I9;0.779279!11843-124H7;0.288331!11841-124H5;0.723593!10693-109F9;0.375476!10436-106E4;0.725652!10483-107A6;0.798627!10282-104F3;0.19674!10023-101D5;0.529791!10066-101I3;0.288289!10065-101I2;0.855457!10800-110I8;0.969205!10610-108F7;0.136585!10841-111E4;0.363307!10541-107H1;0.861013!10842-111E5;0.974566!10562-108A4;0.955144!10024-101D6;0.0786936!10064-101I1;0.986646!10609-108F6;0.794329!10048-101G3;0.0498038!10781-110G7;0.724571!10181-103D1;0.133571!10159-103A6;0.689626!10056-101H2;0.784928!10737-110B8;0.959603!10025-101D7;0.851866!10044-101F8;0.51224!10424-106D1;0.400271!10463-106H4;0.845448!10616-108G4;0.746166!10486-107A9;0.464983!10062-101H8;0.463958!10202-103F4;0.625595!10158-103A5;0.447021!10441-106E9;0.690897!10031-101E4;0.97139!10063-101H9;0.904833!10063-101H9;0.826875!11763-123H8;0.959856!11765-123I1;0.840456!11768-123I4;0.766324!10807-111A6;0.460658!10790-110H7;0.105833!10798-110I6;0.293319!10786-110H3;0.765386!10591-108D6;0.99853!10593-108D8;0.756259!10590-108D5;0.979954!10026-101D8;0.904483!10096-102C6;0.611925!10168-103B6;0.226297!10154-103A1;0.787112!10209-103G2;0.999139!10061-101H7;0.97266!10027-101D9;0.822666!10043-101F7;0.623924!10783-110G9;0.463793!10028-101E1;0.845545!10060-101H6;0.906494!10203-103F5;0.768392!10059-101H5;0.842468!10047-101G2;0.569885!10029-101E2;0.71375!10058-101H4;0.681604!10418-106C4;0.801532!10492-107B6;0.950757!10694-109G1;0.719946!10797-110I5;0.35497!10057-101H3;0.675562!10100-102D1;0.796946!10055-101H1;0.849726!10204-103F6;0.694369!10191-103E2;0.924191!10563-108A5;0.869358
|name=10-YGAGTCHYTD,CNhs13471,BestGuess:SMRC1_f1_HM09(0.728242935500498),T:401.0(5.09%),B:775.8(1.89%),P:1e-66
|name=10-YGAGTCHYTD,CNhs13471,BestGuess:SMRC1_f1_HM09(0.728242935500498),T:401.0(5.09%),B:775.8(1.89%),P:1e-66
|tomtom_result=ARG80#MA0271.1;-1;0.00151887;0.722983;0.82486;6;TGAGTCACTT;GCGTCT;-!ARG81#MA0272.1;0;0.00178563;0.849961;0.82486;8;TGAGTCACTT;AGAGTCAC;-!z#MA0255.1;1;0.00259935;1.23729;0.82486;9;TGAGTCACTT;TTGAGTGATT;+!AP1#MA0099.2;0;0.00347246;1.65289;0.826446;7;TGAGTCACTT;TGAGTCA;-!GSM1#MA0308.1;8;0.00601159;2.86152;0.990497;10;TGAGTCACTT;TATACTCCGGAGTTTTTTAAT;-!NFE2L2#MA0150.1;3;0.00624263;2.97149;0.990497;8;TGAGTCACTT;TGCTGAGTCAT;-!GCN4#MA0303.1;7;0.00841721;4.00659;1;10;TGAGTCACTT;CAAGGGATGAGTCATACTTCA;+!Fos#MA0099.1;0;0.0138765;6.60521;1;8;TGAGTCACTT;TGACTCAC;-
}}
}}

Latest revision as of 15:00, 7 September 2012

Full Name: 10-YGAGTCHYTD,CNhs13471,BestGuess:SMRC1_f1_HM09(0.728242935500498),T:401.0(5.09%),B:775.8(1.89%),P:1e-66

Motif matrix
POACGT
18.822151.17780.2160.801
222.05523.258332.8322.857
3257.84360.1525.66457.343
414.43620.852311.17654.536
521.654120.70114.035244.61
611.228221.35216.04152.38
7139.949113.88419.649127.518
813.634210.52522.857153.984
976.59122.45620.852281.101
10119.49812.431105.062164.009

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
ARG80#MA0271.1-10.001518870.7229830.824866TGAGTCACTTGCGTCT-
ARG81#MA0272.100.001785630.8499610.824868TGAGTCACTTAGAGTCAC-
z#MA0255.110.002599351.237290.824869TGAGTCACTTTTGAGTGATT+
AP1#MA0099.200.003472461.652890.8264467TGAGTCACTTTGAGTCA-
GSM1#MA0308.180.006011592.861520.99049710TGAGTCACTTTATACTCCGGAGTTTTTTAAT-
NFE2L2#MA0150.130.006242632.971490.9904978TGAGTCACTTTGCTGAGTCAT-
GCN4#MA0303.170.008417214.00659110TGAGTCACTTCAAGGGATGAGTCATACTTCA+
Fos#MA0099.100.01387656.6052118TGAGTCACTTTGACTCAC-
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