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MacroAPE 1083:2-GATYGSAS: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;159.25;0.49;274.89;55.37!2;423.36;0.49;0.49;65.66!3;68.6;73.5;22.05;325.85!4;66.15;210.21;2.45;211.19!5;106.82;70.56;274.89;37.73!6;43.61;12...")
 
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0827-111C8;0.90831!10789-110H6;0.538514!10828-111C9;0.395462!10788-110H5;0.426393!10792-110H9;0.405547!10765-110E9;0.180192!10829-111D1;0.437856!10830-111D2;0.755857!10831-111D3;0.41467!10832-111D4;0.331472!10833-111D5;0.613857!10764-110E8;0.584234!10770-110F5;0.259365!10399-106A3;0.313498!10400-106A4;0.648772!10405-106A9;0.669062!10834-111D6;0.624913!10835-111D7;0.201942!10836-111D8;0.961049!10837-111D9;0.905317!10699-109G6;0.682683!10802-111A1;0.887176!10796-110I4;0.453573!10010-101C1;0.525396!10810-111A9;0.031682!10421-106C7;0.437458!10708-109H6;0.372285!12235-129G3;0.481341!12236-129G4;0.176203!12237-129G5;0.224451!10167-103B5;0.232289!10151-102I7;0.237451!10428-106D5;0.630536!10795-110I3;0.642416!10805-111A4;0.43936!10052-101G7;0.866961!10189-103D9;0.945116!10589-108D4;0.800842!10425-106D2;0.369651!10427-106D4;0.0102469!10702-109G9;0.414849!10432-106D9;0.271502!10496-107C1;0.244862!10718-109I7;0.0827222!10011-101C2;0.975348!10053-101G8;0.716827!10686-109F2;0.600732!10084-102B3;0.334146!10012-101C3;0.568445!10085-102B4;0.567728!10482-107A5;0.511346!10419-106C5;0.414811!10080-102A8;0.276136!10760-110E4;0.280547!10709-109H7;0.358714!10710-109H8;0.372835!10703-109H1;0.0744437!10719-109I8;0.228919!10642-109A3;0.46922!10177-103C6;0.636877!10164-103B2;0.753292!10173-103C2;0.718499!10166-103B4;0.682853!10083-102B2;0.949643!10188-103D8;0.816194!10552-107I3;0.426965!10553-107I4;0.546118!10013-101C4;0.228939!10536-107G5;0.465576!10618-108G6;0.264604!10423-106C9;0.424368!10785-110H2;0.533948!12238-129G6;0.224258!12239-129G7;0.425582!12240-129G8;0.470879!10416-106C2;0.338919!10801-110I9;0.910819!10766-110F1;0.337905!10824-111C5;0.329071!10825-111C6;0.349079!10826-111C7;0.287914!10454-106G4;0.267115!10409-106B4;0.522997!10638-108I8;0.511516!10636-108I6;0.722388!10513-107D9;0.0306308!10420-106C6;0.0308194!10082-102B1;0.030241!10014-101C5;0.97127!10070-101I7;0.731489!10452-106G2;0.884704!10453-106G3;0.243246!10449-106F8;0.192965!10042-101F6;0.121169!10069-101I6;0.799368!10193-103E4;0.080234!10631-108I1;0.611416!10438-106E6;0.79932!10488-107B2;0.146978!10196-103E7;0.89765!10071-101I8;0.589156!10071-101I8;0.827852!10041-101F5;0.721107!10451-106G1;0.80739!10450-106F9;0.277749!10604-108F1;0.148348!10605-108F2;0.454357!10606-108F3;0.954345!10603-108E9;0.706141!10497-107C2;0.118246!10448-106F7;0.0395522!10643-109A4;0.501472!10426-106D3;0.276009!10431-106D8;0.576192!10197-103E8;0.506803!10443-106F2;0.21684!10815-111B5;0.155462!10816-111B6;0.757873!10817-111B7;0.626348!10015-101C6;0.739637!10410-106B5;0.5294!10054-101G9;0.617845!10758-110E2;0.758436!10711-109H9;0.230754!10040-101F4;0.363214!10470-106I2;0.593102!10415-106C1;0.0216271!10198-103E9;0.033252!10614-108G2;0.542339!10612-108F9;0.951864!10549-107H9;0.187637!10615-108G3;0.212992!10487-107B1;0.678686!10433-106E1;0.631583!10688-109F4;0.693989!10444-106F3;0.291125!10444-106F3;0.301421!10485-107A8;0.233582!10413-106B8;0.474974!10175-103C4;0.643549!10161-103A8;0.642901!12131-128D7;0.809041!10624-108H3;0.81637!10712-109I1;0.920189!10205-103F7;0.701395!10206-103F8;0.177348!10207-103F9;0.264403!10050-101G5;0.487528!10051-101G6;0.3317!10016-101C7;0.292451!10046-101G1;0.755091!10778-110G4;0.38648!10633-108I3;0.573106!10818-111B8;0.123304!10819-111B9;0.299692!10820-111C1;0.328203!10484-107A7;0.270915!10808-111A7;0.0606879!10169-103B7;0.855399!10153-102I9;0.304934!13425-144D5;0.488529!13433-144E4;0.0122487!13437-144E8;0.0120124!11904-125F5;0.0284327!11905-125F6;0.715471!10039-101F3;0.719894!10791-110H8;0.611439!10017-101C8;0.22466!10045-101F9;0.946139!10509-107D5;0.365686!10839-111E2;0.919556!10692-109F8;0.671264!10079-102A7;0.112322!10078-102A6;0.292951!10721-110A1;0.540776!10569-108B2;0.915203!10570-108B3;0.0672402!10571-108B4;0.0428119!10647-109A8;0.0604675!10752-110D5;0.26114!10782-110G8;0.281505!10726-110A6;0.733855!10018-101C9;0.321458!10086-102B5;0.896422!10182-103D2;0.732126!10165-103B3;0.887485!10499-107C4;0.830177!10408-106B3;0.0836914!10019-101D1;0.232673!10068-101I5;0.861092!10075-102A3;0.655025!10077-102A5;0.300482!10727-110A7;0.33612!10775-110G1;0.770699!10412-106B7;0.972473!12231-129F8;0.156333!12232-129F9;0.36063!12233-129G1;0.335277!12234-129G2;0.106451!10414-106B9;0.483316!10170-103B8;0.0241371!10183-103D3;0.309043!10150-102I6;0.341931!10174-103C3;0.737547!10155-103A2;0.907218!10038-101F2;0.996158!10838-111E1;0.861088!10759-110E3;0.0406519!10514-107E1;0.640519!10465-106H6;0.60004!10691-109F7;0.805636!10843-111E6;0.417575!10844-111E7;0.334287!11747-123G1;0.111139!11748-123G2;0.822955!11749-123G3;0.632601!11750-123G4;0.170342!11751-123G5;0.524573!11840-124H4;0.220235!11752-123G6;0.118325!11753-123G7;0.400009!11754-123G8;0.686436!11755-123G9;0.745946!11756-123H1;0.155308!11833-124G6;0.964572!11760-123H5;0.879389!11836-124G9;0.846602!11758-123H3;0.447982!11835-124G8;0.396184!11762-123H7;0.931156!11838-124H2;0.559955!11757-123H2;0.476057!11759-123H4;0.793633!11761-123H6;0.917462!11842-124H6;0.376831!11837-124H1;0.558473!10568-108B1;0.357219!13230-141I8;0.398015!13231-141I9;0.843194!10696-109G3;0.5921!10493-107B7;0.633052!10494-107B8;0.362726!10850-111F4;4.57725e-05!10851-111F5;0.522333!10852-111F6;0.817444!10853-111F7;0.235646!10854-111F8;0.106229!10855-111F9;0.217019!10856-111G1;0.0318233!10847-111F1;0.426483!10846-111E9;0.187158!10848-111F2;0.436214!10845-111E8;0.245933!10857-111G2;0.645054!10858-111G3;0.553803!10156-103A3;0.518334!11901-125F2;0.724983!11902-125F3;0.420456!11903-125F4;0.386488!10689-109F5;0.516456!10648-109A9;0.995888!10784-110H1;0.00163668!10744-110C6;0.458491!10772-110F7;0.832186!10474-106I6;0.667552!10600-108E6;0.871499!10684-109E9;0.148923!12226-129F3;0.433641!12227-129F4;0.215581!10508-107D4;0.688633!10539-107G8;0.474161!10607-108F4;0.0191693!10555-107I6;0.451931!10774-110F9;0.399773!10637-108I7;0.623088!10663-109C6;0.394459!10728-110A8;0.395747!10729-110A9;0.358266!10430-106D7;0.511695!10730-110B1;0.74334!10813-111B3;0.0306137!10812-111B2;0.790081!10037-101F1;0.332938!10172-103C1;0.793893!10163-103B1;0.515158!10076-102A4;0.861274!10073-102A1;0.454948!10036-101E9;0.832557!10195-103E6;0.757682!10277-104E7;0.333077!10434-106E2;0.467895!10550-107I1;0.143627!10545-107H5;0.425442!10544-107H4;0.278879!10704-109H2;0.505039!10510-107D6;0.245949!10558-107I9;0.147055!10020-101D2;0.5023!10732-110B3;0.914162!10049-101G4;0.125497!10698-109G5;0.496837!10437-106E5;0.470024!10417-106C3;0.346519!10035-101E8;0.246869!10171-103B9;0.586817!10157-103A4;0.693428!10034-101E7;0.43861!10072-101I9;0.62552!10199-103F1;0.932488!10200-103F2;0.589567!10697-109G4;0.022693!10723-110A3;0.740352!10179-103C8;0.0921997!10160-103A7;0.449871!10180-103C9;0.491428!10162-103A9;0.161392!10021-101D3;0.529472!10840-111E3;0.751747!10706-109H4;0.41449!10033-101E6;0.873654!10032-101E5;0.835775!10490-107B4;0.632278!10439-106E7;0.125596!10022-101D4;0.511578!10176-103C5;0.337572!10469-106I1;0.769816!10067-101I4;0.0613592!10411-106B6;0.542474!10471-106I3;0.993571!10030-101E3;0.795686!10475-106I7;0.656339!10787-110H4;0.464073!10477-106I9;0.968691!10695-109G2;0.00124851!11771-123I7;0.7636!11772-123I8;0.495227!11773-123I9;0.278592!10093-102C3;0.1313!10442-106F1;0.515922!10442-106F1;0.97744!10201-103F3;0.849804!10639-108I9;0.304795!11843-124H7;0.496038!11841-124H5;0.784892!10693-109F9;0.748554!10436-106E4;0.353565!10483-107A6;0.259467!10282-104F3;0.21855!10023-101D5;0.200524!10066-101I3;0.213683!10065-101I2;0.169852!10800-110I8;0.386712!10610-108F7;0.015287!10841-111E4;0.431556!10541-107H1;0.903683!10842-111E5;0.00012942!10562-108A4;0.0930466!10024-101D6;0.0213512!10064-101I1;0.646325!10609-108F6;0.810018!10048-101G3;0.837376!10781-110G7;0.208912!10181-103D1;0.26504!10159-103A6;0.940613!10056-101H2;0.592027!10737-110B8;0.852244!10025-101D7;0.491171!10044-101F8;0.522379!10424-106D1;0.838802!10463-106H4;0.712155!10616-108G4;0.0751994!10486-107A9;0.997307!10062-101H8;0.802989!10202-103F4;0.380312!10158-103A5;0.100188!10441-106E9;0.850527!10031-101E4;0.223802!10063-101H9;0.65396!10063-101H9;0.714459!11763-123H8;0.447232!11765-123I1;0.810899!11768-123I4;0.585417!10807-111A6;0.572232!10790-110H7;0.148928!10798-110I6;0.0401398!10786-110H3;0.0156643!10591-108D6;0.0962214!10593-108D8;0.166668!10590-108D5;0.520497!10026-101D8;0.17684!10096-102C6;0.608322!10168-103B6;0.43578!10154-103A1;0.562379!10209-103G2;0.853609!10061-101H7;0.406387!10027-101D9;0.895988!10043-101F7;0.858165!10783-110G9;0.639799!10028-101E1;0.539077!10060-101H6;0.999983!10203-103F5;0.898556!10059-101H5;0.254341!10047-101G2;0.419586!10029-101E2;0.714121!10058-101H4;0.992581!10418-106C4;0.5206!10492-107B6;0.0604868!10694-109G1;0.749276!10797-110I5;0.909051!10057-101H3;0.601215!10100-102D1;0.473177!10055-101H1;0.230994!10204-103F6;0.911082!10191-103E2;0.0990264!10563-108A5;0.150071
|name=2-GATYGSAS,CNhs12124,BestGuess:DDIT3_f1_HM09(0.677019515102138),T:490.0(42.50%),B:12794.1(26.72%),P:1e-30
|name=2-GATYGSAS,CNhs12124,BestGuess:DDIT3_f1_HM09(0.677019515102138),T:490.0(42.50%),B:12794.1(26.72%),P:1e-30
|tomtom_result=ECM23#MA0293.1;3;0.00976599;4.64861;1;8;GATTGGAC;AAAGATCTAAA;+!Ddit3::Cebpa#MA0019.1;2;0.0157408;7.49261;1;8;GATTGGAC;GGGATTGCATCT;-!HAP5#MA0316.1;8;0.0184748;8.79401;1;7;GATTGGAC;ACCAATCAGATCCCA;-!USV1#MA0413.1;12;0.0209176;9.9568;1;8;GATTGGAC;AAATTCCCCCTGAATTTGTG;+
}}
}}

Latest revision as of 14:32, 7 September 2012

Full Name: 2-GATYGSAS,CNhs12124,BestGuess:DDIT3_f1_HM09(0.677019515102138),T:490.0(42.50%),B:12794.1(26.72%),P:1e-30

Motif matrix
POACGT
1159.250.49274.8955.37
2423.360.490.4965.66
368.673.522.05325.85
466.15210.212.45211.19
5106.8270.56274.8937.73
643.61129.36200.9116.13
7257.7460.2726.46145.53
80.49203.35175.91110.25

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
ECM23#MA0293.130.009765994.6486118GATTGGACAAAGATCTAAA+
Ddit3::Cebpa#MA0019.120.01574087.4926118GATTGGACGGGATTGCATCT-
HAP5#MA0316.180.01847488.7940117GATTGGACACCAATCAGATCCCA-
USV1#MA0413.1120.02091769.956818GATTGGACAAATTCCCCCTGAATTTGTG+
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