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MacroAPE 1083:8-SGAAATGACA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;26.875;321.425;463.325;262.3!2;1.075;442.9;629.95;1.075!3;1071.775;1.075;1.075;1.075!4;562.225;119.325;79.55;313.9!5;704.125;1.075;368.725;1...")
 
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7048!11681-122H7;0.637952!11216-116B1;0.482013!12179-129A1;0.771953!12180-129A2;0.058884!12181-129A3;0.132845!12176-128I7;0.112904!12177-128I8;0.122225!12182-129A4;0.119901!12183-129A5;0.0482023!12184-129A6;0.037008!10809-111A8;0.190986!10597-108E3;0.598805!10717-109I6;0.409945!10455-106G5;0.669746!10534-107G3;0.109596!10429-106D6;0.977326!10464-106H5;0.513155!10827-111C8;0.163723!10789-110H6;0.155438!10828-111C9;0.279348!10788-110H5;0.265501!10792-110H9;0.980945!10765-110E9;0.164645!10829-111D1;0.710729!10830-111D2;0.29212!10831-111D3;0.587079!10832-111D4;0.571979!10833-111D5;0.283836!10764-110E8;0.704664!10770-110F5;0.64101!10399-106A3;0.431814!10400-106A4;0.513435!10405-106A9;0.63498!10834-111D6;0.274235!10835-111D7;0.271016!10836-111D8;0.328354!10837-111D9;0.0706297!10699-109G6;0.350752!10802-111A1;0.147773!10796-110I4;0.051339!10010-101C1;0.499929!10810-111A9;0.0225222!10421-106C7;0.956244!10708-109H6;0.12526!12235-129G3;0.364756!12236-129G4;0.696125!12237-129G5;0.00856525!10167-103B5;0.406974!10151-102I7;0.803967!10428-106D5;0.328515!10795-110I3;0.236722!10805-111A4;0.0943705!10052-101G7;0.72023!10189-103D9;0.0478045!10589-108D4;0.596393!10425-106D2;0.454146!10427-106D4;0.658674!10702-109G9;0.00396608!10432-106D9;0.0739219!10496-107C1;0.280669!10718-109I7;0.0211818!10011-101C2;0.956597!10053-101G8;0.0960146!10686-109F2;0.161615!10084-102B3;0.203363!10012-101C3;0.417632!10085-102B4;0.387528!10482-107A5;0.369009!10419-106C5;0.250468!10080-102A8;0.589195!10760-110E4;0.192277!10709-109H7;0.966051!10710-109H8;0.605642!10703-109H1;0.965426!10719-109I8;0.0868361!10642-109A3;0.115884!10177-103C6;0.766694!10164-103B2;0.438579!10173-103C2;0.285825!10166-103B4;0.521412!10083-102B2;0.313197!10188-103D8;0.452402!10552-107I3;0.374565!10553-107I4;0.931747!10013-101C4;0.280855!10536-107G5;0.00915168!10618-108G6;0.0620772!10423-106C9;0.296546!10785-110H2;0.532308!12238-129G6;0.846874!12239-129G7;0.973372!12240-129G8;0.0878799!10416-106C2;0.887827!10801-110I9;0.18611!10766-110F1;0.497161!10824-111C5;0.107144!10825-111C6;0.618427!10826-111C7;0.590239!10454-106G4;0.446394!10409-106B4;0.538785!10638-108I8;0.156135!10636-108I6;0.655128!10513-107D9;0.36338!10420-106C6;0.362505!10082-102B1;0.876875!10014-101C5;0.0431849!10070-101I7;0.269953!10452-106G2;0.342854!10453-106G3;0.105691!10449-106F8;0.159594!10042-101F6;0.23371!10069-101I6;0.175771!10193-103E4;0.0511417!10631-108I1;0.374165!10438-106E6;0.347984!10488-107B2;0.183009!10196-103E7;0.191526!10071-101I8;0.168144!10071-101I8;0.0692472!10041-101F5;0.165429!10451-106G1;0.068048!10450-106F9;0.138441!10604-108F1;0.191858!10605-108F2;0.202902!10606-108F3;0.219837!10603-108E9;0.141835!10497-107C2;0.301764!10448-106F7;0.342322!10643-109A4;0.540075!10426-106D3;0.147816!10431-106D8;0.976112!10197-103E8;0.787566!10443-106F2;0.333416!10815-111B5;0.241578!10816-111B6;0.526522!10817-111B7;0.49356!10015-101C6;0.572278!10410-106B5;0.0101955!10054-101G9;0.0212558!10758-110E2;0.035924!10711-109H9;0.335791!10040-101F4;0.0745678!10470-106I2;0.550258!10415-106C1;0.423506!10198-103E9;0.775116!10614-108G2;0.188146!10612-108F9;0.160515!10549-107H9;0.109948!10615-108G3;0.185779!10487-107B1;0.0122576!10433-106E1;0.0143891!10688-109F4;0.157848!10444-106F3;0.888645!10444-106F3;0.904744!10485-107A8;0.974164!10413-106B8;0.201983!10175-103C4;0.226734!10161-103A8;0.361771!12131-128D7;0.173161!10624-108H3;0.0596457!10712-109I1;0.568541!10205-103F7;0.00734549!10206-103F8;0.0583839!10207-103F9;0.0138918!10050-101G5;0.475556!10051-101G6;0.00976794!10016-101C7;0.0178566!10046-101G1;0.0362973!10778-110G4;0.0119623!10633-108I3;0.153241!10818-111B8;0.142271!10819-111B9;0.511852!10820-111C1;0.461703!10484-107A7;0.422514!10808-111A7;0.0133189!10169-103B7;0.000683271!10153-102I9;0.684167!13425-144D5;0.227726!13433-144E4;0.857057!13437-144E8;0.899784!11904-125F5;0.911157!11905-125F6;0.00591615!10039-101F3;5.98408e-05!10791-110H8;0.493476!10017-101C8;0.817962!10045-101F9;0.658684!10509-107D5;0.310866!10839-111E2;0.694553!10692-109F8;0.704361!10079-102A7;0.992466!10078-102A6;0.0204939!10721-110A1;0.0451556!10569-108B2;0.716811!10570-108B3;0.230345!10571-108B4;0.412374!10647-109A8;0.249519!10752-110D5;0.830262!10782-110G8;0.0577361!10726-110A6;0.921199!10018-101C9;0.0834098!10086-102B5;0.892188!10182-103D2;0.27512!10165-103B3;0.370772!10499-107C4;0.25064!10408-106B3;0.185099!10019-101D1;0.818172!10068-101I5;0.157095!10075-102A3;0.249809!10077-102A5;0.258485!10727-110A7;0.996745!10775-110G1;0.0114344!10412-106B7;0.137492!12231-129F8;0.754949!12232-129F9;0.435561!12233-129G1;0.32415!12234-129G2;0.384113!10414-106B9;0.521202!10170-103B8;0.164659!10183-103D3;0.902802!10150-102I6;0.539998!10174-103C3;0.413466!10155-103A2;0.240591!10038-101F2;0.270463!10838-111E1;0.302443!10759-110E3;0.472624!10514-107E1;0.925297!10465-106H6;0.951871!10691-109F7;0.490631!10843-111E6;0.625972!10844-111E7;0.395047!11747-123G1;0.214528!11748-123G2;0.667402!11749-123G3;0.38087!11750-123G4;0.59073!11751-123G5;0.844102!11840-124H4;0.739063!11752-123G6;0.774376!11753-123G7;0.284679!11754-123G8;0.320298!11755-123G9;0.610509!11756-123H1;0.997146!11833-124G6;0.921922!11760-123H5;0.556124!11836-124G9;0.624475!11758-123H3;0.832458!11835-124G8;0.653485!11762-123H7;0.586573!11838-124H2;0.315712!11757-123H2;0.695145!11759-123H4;0.738813!11761-123H6;0.804696!11842-124H6;0.868175!11837-124H1;0.620357!10568-108B1;0.286574!13230-141I8;0.0591588!13231-141I9;0.224845!10696-109G3;0.141938!10493-107B7;0.203777!10494-107B8;0.180127!10850-111F4;0.423013!10851-111F5;0.74329!10852-111F6;0.624813!10853-111F7;0.837605!10854-111F8;0.697347!10855-111F9;0.558456!10856-111G1;0.00363174!10847-111F1;0.0234211!10846-111E9;0.265319!10848-111F2;0.0116419!10845-111E8;0.154961!10857-111G2;0.0311279!10858-111G3;0.757498!10156-103A3;0.601237!11901-125F2;0.326693!11902-125F3;0.31762!11903-125F4;0.186888!10689-109F5;0.236329!10648-109A9;0.298121!10784-110H1;0.714881!10744-110C6;0.158448!10772-110F7;0.0831122!10474-106I6;0.508829!10600-108E6;0.00947998!10684-109E9;0.887299!12226-129F3;0.671297!12227-129F4;0.0613516!10508-107D4;0.510585!10539-107G8;0.718909!10607-108F4;0.971345!10555-107I6;0.672646!10774-110F9;0.84832!10637-108I7;0.240538!10663-109C6;0.69594!10728-110A8;0.944554!10729-110A9;0.583558!10430-106D7;0.197289!10730-110B1;0.625184!10813-111B3;0.443342!10812-111B2;0.0184867!10037-101F1;0.00175748!10172-103C1;0.509055!10163-103B1;0.649784!10076-102A4;0.291222!10073-102A1;0.466892!10036-101E9;0.220809!10195-103E6;0.457685!10277-104E7;0.31391!10434-106E2;0.251817!10550-107I1;0.990681!10545-107H5;0.868301!10544-107H4;0.939069!10704-109H2;0.665625!10510-107D6;0.525725!10558-107I9;0.253918!10020-101D2;0.863209!10732-110B3;0.0577045!10049-101G4;0.677148!10698-109G5;0.352922!10437-106E5;0.329726!10417-106C3;0.897848!10035-101E8;0.547672!10171-103B9;0.567849!10157-103A4;0.562623!10034-101E7;0.439319!10072-101I9;0.477897!10199-103F1;0.0782127!10200-103F2;0.303561!10697-109G4;0.081999!10723-110A3;0.38505!10179-103C8;0.586792!10160-103A7;0.826827!10180-103C9;0.593725!10162-103A9;0.685273!10021-101D3;0.87622!10840-111E3;0.333019!10706-109H4;0.0800034!10033-101E6;0.592564!10032-101E5;0.638265!10490-107B4;0.493724!10439-106E7;0.731018!10022-101D4;0.115295!10176-103C5;0.0661798!10469-106I1;0.589367!10067-101I4;0.128855!10411-106B6;0.0104739!10471-106I3;0.122432!10030-101E3;0.194771!10475-106I7;0.0713466!10787-110H4;0.922!10477-106I9;0.675682!10695-109G2;0.809699!11771-123I7;0.152839!11772-123I8;0.292247!11773-123I9;0.00730523!10093-102C3;0.487938!10442-106F1;0.573007!10442-106F1;0.0500628!10201-103F3;0.0558898!10639-108I9;0.145072!11843-124H7;0.379345!11841-124H5;0.968569!10693-109F9;0.955481!10436-106E4;0.84993!10483-107A6;0.704349!10282-104F3;0.107489!10023-101D5;0.211437!10066-101I3;0.0559098!10065-101I2;0.0189721!10800-110I8;0.0427682!10610-108F7;0.321729!10841-111E4;0.161343!10541-107H1;0.465931!10842-111E5;0.343623!10562-108A4;0.367224!10024-101D6;0.173257!10064-101I1;0.753128!10609-108F6;0.0603765!10048-101G3;0.0301998!10781-110G7;0.00506223!10181-103D1;0.00950067!10159-103A6;0.304577!10056-101H2;0.445852!10737-110B8;0.0158027!10025-101D7;0.488858!10044-101F8;0.54291!10424-106D1;0.288595!10463-106H4;0.139238!10616-108G4;0.805935!10486-107A9;0.0648324!10062-101H8;0.0228372!10202-103F4;0.268327!10158-103A5;0.160708!10441-106E9;0.22566!10031-101E4;0.669985!10063-101H9;0.441687!10063-101H9;0.115269!11763-123H8;0.0442483!11765-123I1;0.0114859!11768-123I4;0.0022884!10807-111A6;0.0359166!10790-110H7;0.92037!10798-110I6;0.862178!10786-110H3;0.61826!10591-108D6;0.326848!10593-108D8;0.477438!10590-108D5;0.297533!10026-101D8;0.545086!10096-102C6;0.622765!10168-103B6;0.593931!10154-103A1;0.310407!10209-103G2;0.256388!10061-101H7;0.0386744!10027-101D9;0.0109077!10043-101F7;0.591683!10783-110G9;0.518486!10028-101E1;0.200222!10060-101H6;0.178938!10203-103F5;0.0492751!10059-101H5;0.0276879!10047-101G2;0.0314649!10029-101E2;0.460139!10058-101H4;0.191429!10418-106C4;0.0166146!10492-107B6;0.218336!10694-109G1;0.973682!10797-110I5;0.133689!10057-101H3;0.647227!10100-102D1;0.0051286!10055-101H1;0.0337478!10204-103F6;0.000249036!10191-103E2;0.202989!10563-108A5;0.106491
|name=8-SGAAATGACA,CNhs13224,BestGuess:PU.1-IRF/Bcell-PU.1-ChIP-Seq/Homer(0.658197342095465),T:1075.0(41.75%),B:13625.1(29.46%),P:1e-39
|name=8-SGAAATGACA,CNhs13224,BestGuess:PU.1-IRF/Bcell-PU.1-ChIP-Seq/Homer(0.658197342095465),T:1075.0(41.75%),B:13625.1(29.46%),P:1e-39
|tomtom_result=ABF1#MA0265.1;5;0.00126513;0.602202;1;10;GGAAATGACA;TCGTATAAAGTGATAA;+!caup#MA0217.1;-5;0.00429369;2.0438;1;5;GGAAATGACA;TAACA;+!achi#MA0207.1;-5;0.00703614;3.3492;1;5;GGAAATGACA;TGACAG;+!hth#MA0227.1;-5;0.00759621;3.6158;1;5;GGAAATGACA;TGACAG;+!vis#MA0252.1;-5;0.00759621;3.6158;1;5;GGAAATGACA;TGACAG;+!Pax2#MA0067.1;-2;0.00849782;4.04496;1;8;GGAAATGACA;GCGTGACT;-!NFE2L1::MafG#MA0089.1;-3;0.0107676;5.12539;1;6;GGAAATGACA;CATGAC;+!Gfi#MA0038.1;-1;0.0126549;6.02372;1;9;GGAAATGACA;CAAATCACTG;+!RUNX1#MA0002.2;-2;0.0137123;6.52706;1;8;GGAAATGACA;AAACCACAGAC;-!Six4#MA0204.1;-5;0.0194001;9.23446;1;5;GGAAATGACA;TGATAC;+
}}
}}

Latest revision as of 14:09, 7 September 2012

Full Name: 8-SGAAATGACA,CNhs13224,BestGuess:PU.1-IRF/Bcell-PU.1-ChIP-Seq/Homer(0.658197342095465),T:1075.0(41.75%),B:13625.1(29.46%),P:1e-39

Motif matrix
POACGT
126.875321.425463.325262.3
21.075442.9629.951.075
31071.7751.0751.0751.075
4562.225119.32579.55313.9
5704.1251.075368.7251.075
61.075396.6751.075676.175
7290.25204.25469.775110.725
81071.7751.0751.0751.075
91.075829.91.075242.95
10896.5599.97577.41.075

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
ABF1#MA0265.150.001265130.602202110GGAAATGACATCGTATAAAGTGATAA+
caup#MA0217.1-50.004293692.043815GGAAATGACATAACA+
achi#MA0207.1-50.007036143.349215GGAAATGACATGACAG+
hth#MA0227.1-50.007596213.615815GGAAATGACATGACAG+
vis#MA0252.1-50.007596213.615815GGAAATGACATGACAG+
Pax2#MA0067.1-20.008497824.0449618GGAAATGACAGCGTGACT-
NFE2L1::MafG#MA0089.1-30.01076765.1253916GGAAATGACACATGAC+
Gfi#MA0038.1-10.01265496.0237219GGAAATGACACAAATCACTG+
RUNX1#MA0002.2-20.01371236.5270618GGAAATGACAAAACCACAGAC-
Six4#MA0204.1-50.01940019.2344615GGAAATGACATGATAC+
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