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MacroAPE 1083:Motif GACNTG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;5968;0!02;5968;0;0;0!03;0;5968;0;0!04;1492;1492;1492;1492!05;0;0;0;5968!06;0;0;5968;0 |macroape_1083_sample_pvalues=11376-118A8;0.1234...")
 
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.933214!10534-107G3;0.517833!10429-106D6;0.673266!10464-106H5;0.229914!10827-111C8;0.614435!10789-110H6;0.772418!10828-111C9;0.633416!10788-110H5;0.445522!10792-110H9;0.94397!10765-110E9;0.552458!10829-111D1;0.431346!10830-111D2;0.885888!10831-111D3;0.127747!10832-111D4;0.270751!10833-111D5;0.461295!10764-110E8;0.56708!10770-110F5;0.295951!10399-106A3;0.597835!10400-106A4;0.854325!10405-106A9;0.818095!10834-111D6;0.728587!10835-111D7;0.513969!10836-111D8;0.47467!10837-111D9;0.134431!10699-109G6;0.703696!10802-111A1;0.493191!10796-110I4;0.186603!10010-101C1;0.897477!10810-111A9;0.855755!10421-106C7;0.369882!10708-109H6;0.78801!12235-129G3;0.424542!12236-129G4;0.000823107!12237-129G5;0.00347041!10167-103B5;0.00908896!10151-102I7;0.092722!10428-106D5;0.113593!10795-110I3;0.660164!10805-111A4;0.965125!10052-101G7;0.0715732!10189-103D9;0.872775!10589-108D4;0.604613!10425-106D2;0.719054!10427-106D4;0.454491!10702-109G9;0.784515!10432-106D9;0.000225889!10496-107C1;0.928923!10718-109I7;0.865284!10011-101C2;0.673987!10053-101G8;0.921634!10686-109F2;0.227633!10084-102B3;0.129647!10012-101C3;0.063364!10085-102B4;0.122977!10482-107A5;0.0846957!10419-106C5;0.904364!10080-102A8;0.577632!10760-110E4;0.960916!10709-109H7;0.910721!10710-109H8;0.646788!10703-109H1;0.9491!10719-109I8;0.767989!10642-109A3;0.304131!10177-103C6;0.249247!10164-103B2;0.247213!10173-103C2;0.113074!10166-103B4;0.0664363!10083-102B2;0.0989343!10188-103D8;0.0585006!10552-107I3;0.178861!10553-107I4;0.533335!10013-101C4;0.752196!10536-107G5;0.875946!10618-108G6;0.803564!10423-106C9;0.656636!10785-110H2;0.187297!12238-129G6;0.242488!12239-129G7;0.000755827!12240-129G8;0.0101602!10416-106C2;0.00556866!10801-110I9;0.87261!10766-110F1;0.992521!10824-111C5;0.610629!10825-111C6;0.798042!10826-111C7;0.834936!10454-106G4;0.718922!10409-106B4;0.578799!10638-108I8;0.363455!10636-108I6;0.758506!10513-107D9;0.836817!10420-106C6;0.962952!10082-102B1;0.476981!10014-101C5;0.96027!10070-101I7;0.993655!10452-106G2;0.892367!10453-106G3;0.893154!10449-106F8;0.768636!10042-101F6;0.756975!10069-101I6;0.0968786!10193-103E4;0.884948!10631-108I1;0.102302!10438-106E6;0.678339!10488-107B2;0.452326!10196-103E7;0.5645!10071-101I8;0.681924!10071-101I8;0.842554!10041-101F5;0.240175!10451-106G1;0.626183!10450-106F9;0.477751!10604-108F1;0.452129!10605-108F2;0.0686878!10606-108F3;0.138856!10603-108E9;0.081326!10497-107C2;0.0498077!10448-106F7;0.794835!10643-109A4;0.0969355!10426-106D3;0.994237!10431-106D8;0.956084!10197-103E8;0.823809!10443-106F2;0.748059!10815-111B5;0.63392!10816-111B6;0.950237!10817-111B7;0.992062!10015-101C6;0.998673!10410-106B5;0.848052!10054-101G9;0.342701!10758-110E2;0.858948!10711-109H9;0.948957!10040-101F4;0.374958!10470-106I2;0.0779609!10415-106C1;0.987062!10198-103E9;0.714936!10614-108G2;0.801485!10612-108F9;0.705462!10549-107H9;0.953342!10615-108G3;0.439129!10487-107B1;0.928643!10433-106E1;0.623765!10688-109F4;0.3306!10444-106F3;0.739079!10444-106F3;0.621853!10485-107A8;0.558275!10413-106B8;0.947053!10175-103C4;0.699269!10161-103A8;0.125151!12131-128D7;0.117729!10624-108H3;0.17833!10712-109I1;0.169259!10205-103F7;0.812674!10206-103F8;0.733567!10207-103F9;0.551118!10050-101G5;0.707785!10051-101G6;0.786334!10016-101C7;0.760306!10046-101G1;0.520569!10778-110G4;0.675527!10633-108I3;0.0470503!10818-111B8;0.613896!10819-111B9;0.285496!10820-111C1;0.312172!10484-107A7;0.308938!10808-111A7;0.185238!10169-103B7;0.538655!10153-102I9;0.143666!13425-144D5;0.121527!13433-144E4;0.393513!13437-144E8;0.611474!11904-125F5;0.560925!11905-125F6;0.692737!10039-101F3;0.590244!10791-110H8;0.0876322!10017-101C8;0.84089!10045-101F9;0.962122!10509-107D5;0.815181!10839-111E2;0.311333!10692-109F8;0.972581!10079-102A7;0.76596!10078-102A6;0.870289!10721-110A1;0.790238!10569-108B2;0.887606!10570-108B3;0.0400749!10571-108B4;0.0117636!10647-109A8;0.148318!10752-110D5;0.465806!10782-110G8;0.21506!10726-110A6;0.180324!10018-101C9;0.597448!10086-102B5;0.1549!10182-103D2;0.0537051!10165-103B3;0.137038!10499-107C4;0.14769!10408-106B3;0.951081!10019-101D1;0.544502!10068-101I5;0.916422!10075-102A3;0.893395!10077-102A5;0.76949!10727-110A7;0.819308!10775-110G1;0.473331!10412-106B7;0.77914!12231-129F8;0.252704!12232-129F9;0.921331!12233-129G1;0.876475!12234-129G2;0.900854!10414-106B9;0.928609!10170-103B8;0.974188!10183-103D3;0.0904359!10150-102I6;0.112738!10174-103C3;0.149658!10155-103A2;0.276638!10038-101F2;0.189499!10838-111E1;0.154713!10759-110E3;0.392368!10514-107E1;0.401468!10465-106H6;0.264913!10691-109F7;0.235583!10843-111E6;0.242449!10844-111E7;0.231127!11747-123G1;0.280895!11748-123G2;0.0211304!11749-123G3;0.0355464!11750-123G4;0.0294075!11751-123G5;0.100899!11840-124H4;0.129071!11752-123G6;0.00400334!11753-123G7;0.000578831!11754-123G8;0.0789581!11755-123G9;0.175271!11756-123H1;0.022545!11833-124G6;0.042179!11760-123H5;0.0079552!11836-124G9;0.0398543!11758-123H3;0.0611993!11835-124G8;0.00613513!11762-123H7;0.00255923!11838-124H2;0.0151422!11757-123H2;0.0083797!11759-123H4;0.0445769!11761-123H6;0.0132113!11842-124H6;0.0516262!11837-124H1;0.036644!10568-108B1;0.0315678!13230-141I8;0.315313!13231-141I9;0.0694908!10696-109G3;0.0674828!10493-107B7;0.997043!10494-107B8;0.779957!10850-111F4;0.516795!10851-111F5;0.537078!10852-111F6;0.216032!10853-111F7;0.547839!10854-111F8;0.776616!10855-111F9;0.552853!10856-111G1;0.690823!10847-111F1;0.460048!10846-111E9;0.397663!10848-111F2;0.4496!10845-111E8;0.38233!10857-111G2;0.48988!10858-111G3;0.949773!10156-103A3;0.708065!11901-125F2;0.124582!11902-125F3;0.120043!11903-125F4;0.179982!10689-109F5;0.0876532!10648-109A9;0.819839!10784-110H1;0.401086!10744-110C6;0.72102!10772-110F7;0.906675!10474-106I6;0.717702!10600-108E6;0.962214!10684-109E9;0.518897!12226-129F3;0.388255!12227-129F4;0.459784!10508-107D4;0.567688!10539-107G8;0.590714!10607-108F4;0.159968!10555-107I6;0.732547!10774-110F9;0.314728!10637-108I7;0.782058!10663-109C6;0.351059!10728-110A8;0.552008!10729-110A9;0.196947!10430-106D7;0.0106692!10730-110B1;0.451018!10813-111B3;0.0673041!10812-111B2;0.084295!10037-101F1;0.115102!10172-103C1;0.107571!10163-103B1;0.0879264!10076-102A4;0.131244!10073-102A1;0.100207!10036-101E9;0.13087!10195-103E6;0.0637329!10277-104E7;0.0994672!10434-106E2;0.218823!10550-107I1;0.557901!10545-107H5;0.74309!10544-107H4;0.961799!10704-109H2;0.931823!10510-107D6;0.00972967!10558-107I9;0.651609!10020-101D2;0.935703!10732-110B3;0.734402!10049-101G4;0.120966!10698-109G5;0.095389!10437-106E5;0.434137!10417-106C3;0.978766!10035-101E8;0.844294!10171-103B9;0.0838783!10157-103A4;0.0911!10034-101E7;0.131733!10072-101I9;0.0900352!10199-103F1;0.215822!10200-103F2;0.0696612!10697-109G4;0.901536!10723-110A3;0.478779!10179-103C8;0.56612!10160-103A7;0.306718!10180-103C9;0.174912!10162-103A9;0.554154!10021-101D3;0.716679!10840-111E3;0.219449!10706-109H4;0.741185!10033-101E6;0.212783!10032-101E5;0.100402!10490-107B4;0.0577057!10439-106E7;0.931643!10022-101D4;0.680764!10176-103C5;0.927679!10469-106I1;0.108404!10067-101I4;0.320958!10411-106B6;0.553839!10471-106I3;0.83815!10030-101E3;0.473467!10475-106I7;0.262229!10787-110H4;0.144552!10477-106I9;0.652199!10695-109G2;0.198965!11771-123I7;0.844131!11772-123I8;0.765111!11773-123I9;0.90888!10093-102C3;0.425801!10442-106F1;0.260076!10442-106F1;0.691984!10201-103F3;0.639133!10639-108I9;0.629005!11843-124H7;0.323314!11841-124H5;0.672183!10693-109F9;0.62245!10436-106E4;0.920907!10483-107A6;0.993771!10282-104F3;0.641075!10023-101D5;0.476101!10066-101I3;0.514075!10065-101I2;0.897418!10800-110I8;0.90266!10610-108F7;0.455946!10841-111E4;0.15336!10541-107H1;0.417474!10842-111E5;0.674868!10562-108A4;0.651679!10024-101D6;0.300343!10064-101I1;0.810248!10609-108F6;0.779675!10048-101G3;0.903768!10781-110G7;0.646602!10181-103D1;0.959907!10159-103A6;0.294871!10056-101H2;0.132142!10737-110B8;0.413367!10025-101D7;0.0175059!10044-101F8;0.598234!10424-106D1;0.671903!10463-106H4;0.429933!10616-108G4;0.953971!10486-107A9;0.518217!10062-101H8;0.891219!10202-103F4;0.794135!10158-103A5;0.480674!10441-106E9;0.12319!10031-101E4;0.481272!10063-101H9;0.0665376!10063-101H9;0.168846!11763-123H8;0.90646!11765-123I1;0.0760014!11768-123I4;0.106874!10807-111A6;0.0153499!10790-110H7;0.15525!10798-110I6;0.154346!10786-110H3;0.274183!10591-108D6;0.737134!10593-108D8;0.157258!10590-108D5;0.280747!10026-101D8;0.894885!10096-102C6;0.262989!10168-103B6;0.12295!10154-103A1;0.144624!10209-103G2;0.119578!10061-101H7;0.904655!10027-101D9;0.995544!10043-101F7;0.130906!10783-110G9;0.217379!10028-101E1;0.809588!10060-101H6;0.851294!10203-103F5;0.79633!10059-101H5;0.875527!10047-101G2;0.598046!10029-101E2;0.960415!10058-101H4;0.790046!10418-106C4;0.684007!10492-107B6;0.990697!10694-109G1;0.900056!10797-110I5;0.982979!10057-101H3;0.425648!10100-102D1;0.685189!10055-101H1;0.683296!10204-103F6;0.515797!10191-103E2;0.695193!10563-108A5;0.786583
|name=motif_GACNTG
|name=motif_GACNTG
|tomtom_result=bZIP911#MA0097.1;3;0.00230998;1.09955;1;6;GACATG;GATGACGTGGCC;+!ESR1#MA0112.2;11;0.00554196;2.63797;1;6;GACATG;GGGGTCACGGTGACCTGG;-!HIF1A::ARNT#MA0259.1;1;0.00625844;2.97902;1;6;GACATG;GGACGTGC;+!TGA1A#MA0129.1;1;0.00642542;3.0585;1;6;GACATG;TGACGTA;-!EmBP-1#MA0128.1;1;0.00831807;3.9594;1;6;GACATG;ACACGTGG;+!TP53#MA0106.1;3;0.00923828;4.39742;1;6;GACATG;CCGGACATGCCCGGGCATGT;+!ESR1#MA0112.2;10;0.0116514;5.54607;1;6;GACATG;AGGTCAGGGTGACCTGGGCC;-!HAC1#MA0310.1;0;0.015868;7.55317;1;6;GACATG;CACGTGTC;-!sna#MA0086.1;0;0.0187642;8.93177;1;6;GACATG;CACCTG;-!Mycn#MA0104.1;0;0.0187642;8.93177;1;6;GACATG;CACGTG;+
}}
}}

Latest revision as of 13:40, 7 September 2012

Full Name: motif_GACNTG

Motif matrix
POACGT
010059680
025968000
030596800
041492149214921492
050005968
060059680

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
bZIP911#MA0097.130.002309981.0995516GACATGGATGACGTGGCC+
ESR1#MA0112.2110.005541962.6379716GACATGGGGGTCACGGTGACCTGG-
HIF1A::ARNT#MA0259.110.006258442.9790216GACATGGGACGTGC+
TGA1A#MA0129.110.006425423.058516GACATGTGACGTA-
EmBP-1#MA0128.110.008318073.959416GACATGACACGTGG+
TP53#MA0106.130.009238284.3974216GACATGCCGGACATGCCCGGGCATGT+
ESR1#MA0112.2100.01165145.5460716GACATGAGGTCAGGGTGACCTGGGCC-
HAC1#MA0310.100.0158687.5531716GACATGCACGTGTC-
sna#MA0086.100.01876428.9317716GACATGCACCTG-
Mycn#MA0104.100.01876428.9317716GACATGCACGTG+
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