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MacroAPE 1083:9-CGGAAACAA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;47.5;1110.0;43.75;48.75!2;45.0;142.5;1017.5;45.0!3;58.75;103.75;987.5;100.0!4;1052.5;83.75;27.5;86.25!5;1087.5;22.5;78.75;61.25!6;928.75;130...")
 
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80-129A2;0.0808858!12181-129A3;0.0790382!12176-128I7;0.34351!12177-128I8;0.048508!12182-129A4;0.10306!12183-129A5;0.0795099!12184-129A6;0.0772789!10809-111A8;0.155099!10597-108E3;0.254945!10717-109I6;0.0509475!10455-106G5;0.841273!10534-107G3;0.0125807!10429-106D6;0.0074867!10464-106H5;0.000872588!10827-111C8;0.00263022!10789-110H6;0.0233619!10828-111C9;0.0453874!10788-110H5;0.138423!10792-110H9;0.0696609!10765-110E9;0.0200977!10829-111D1;0.0198739!10830-111D2;0.0115009!10831-111D3;0.0121941!10832-111D4;0.0828052!10833-111D5;0.00621726!10764-110E8;0.00500898!10770-110F5;0.020992!10399-106A3;0.0815772!10400-106A4;0.0131507!10405-106A9;0.00763481!10834-111D6;0.00732819!10835-111D7;0.0334469!10836-111D8;0.0261022!10837-111D9;0.062483!10699-109G6;0.0136159!10802-111A1;0.0179993!10796-110I4;0.00247749!10010-101C1;0.0634927!10810-111A9;0.0312136!10421-106C7;0.0398791!10708-109H6;0.0010985!12235-129G3;0.153399!12236-129G4;0.597439!12237-129G5;0.145989!10167-103B5;0.975912!10151-102I7;0.0587131!10428-106D5;0.0304922!10795-110I3;0.00757045!10805-111A4;0.00322568!10052-101G7;0.89302!10189-103D9;0.00457425!10589-108D4;0.00928753!10425-106D2;0.374087!10427-106D4;0.0267072!10702-109G9;0.0541618!10432-106D9;0.0418476!10496-107C1;0.0485212!10718-109I7;0.0102878!10011-101C2;0.00982233!10053-101G8;0.00877224!10686-109F2;0.600336!10084-102B3;0.936169!10012-101C3;0.0172087!10085-102B4;0.0396884!10482-107A5;0.0633954!10419-106C5;0.0945039!10080-102A8;0.0676157!10760-110E4;0.00211368!10709-109H7;0.138786!10710-109H8;0.485414!10703-109H1;0.576466!10719-109I8;0.765922!10642-109A3;0.918675!10177-103C6;0.997932!10164-103B2;0.0479056!10173-103C2;0.0583252!10166-103B4;0.0474982!10083-102B2;0.0267293!10188-103D8;0.0193007!10552-107I3;0.018939!10553-107I4;0.0342566!10013-101C4;0.525275!10536-107G5;0.00902093!10618-108G6;0.00354659!10423-106C9;0.0545306!10785-110H2;0.063418!12238-129G6;0.249537!12239-129G7;0.0434651!12240-129G8;0.01018!10416-106C2;0.138114!10801-110I9;0.0102398!10766-110F1;0.00549046!10824-111C5;0.00594898!10825-111C6;0.0718092!10826-111C7;0.0714938!10454-106G4;0.0553971!10409-106B4;0.0697952!10638-108I8;0.00719977!10636-108I6;0.238012!10513-107D9;0.257137!10420-106C6;0.166171!10082-102B1;0.0563786!10014-101C5;0.00113964!10070-101I7;0.00477664!10452-106G2;0.00477075!10453-106G3;0.0183318!10449-106F8;0.0148141!10042-101F6;0.0207229!10069-101I6;0.0433608!10193-103E4;0.0278837!10631-108I1;0.0433284!10438-106E6;0.0111241!10488-107B2;0.279981!10196-103E7;0.0424127!10071-101I8;0.0375231!10071-101I8;0.00376404!10041-101F5;0.0794386!10451-106G1;0.010384!10450-106F9;0.10821!10604-108F1;0.11348!10605-108F2;0.102435!10606-108F3;0.0663934!10603-108E9;0.124961!10497-107C2;0.0774912!10448-106F7;0.294527!10643-109A4;0.0118479!10426-106D3;0.489602!10431-106D8;0.291965!10197-103E8;0.228672!10443-106F2;0.0231503!10815-111B5;0.595226!10816-111B6;0.131709!10817-111B7;0.15253!10015-101C6;0.128568!10410-106B5;0.00586586!10054-101G9;0.0511941!10758-110E2;0.00961493!10711-109H9;0.00225799!10040-101F4;0.0106172!10470-106I2;0.0562618!10415-106C1;0.543927!10198-103E9;0.00284783!10614-108G2;0.00589029!10612-108F9;0.0173314!10549-107H9;0.0912798!10615-108G3;0.106925!10487-107B1;0.633215!10433-106E1;0.00495567!10688-109F4;0.0359898!10444-106F3;0.647231!10444-106F3;0.72974!10485-107A8;0.790403!10413-106B8;0.39176!10175-103C4;0.04649!10161-103A8;0.0452959!12131-128D7;0.0577858!10624-108H3;0.0656695!10712-109I1;0.117861!10205-103F7;0.0444303!10206-103F8;0.0212284!10207-103F9;0.0308773!10050-101G5;0.171226!10051-101G6;0.00213535!10016-101C7;0.0435038!10046-101G1;0.0651428!10778-110G4;0.0463114!10633-108I3;0.110606!10818-111B8;0.657758!10819-111B9;0.0555367!10820-111C1;0.0563814!10484-107A7;0.0547387!10808-111A7;0.148002!10169-103B7;0.0134393!10153-102I9;0.0426912!13425-144D5;0.0318121!13433-144E4;0.92201!13437-144E8;0.818671!11904-125F5;0.818087!11905-125F6;0.161077!10039-101F3;0.657116!10791-110H8;0.0481706!10017-101C8;0.0930858!10045-101F9;0.0149298!10509-107D5;0.00647918!10839-111E2;0.00171492!10692-109F8;0.0106397!10079-102A7;0.634879!10078-102A6;0.0209527!10721-110A1;0.0597784!10569-108B2;0.0891136!10570-108B3;0.359846!10571-108B4;0.502452!10647-109A8;0.251108!10752-110D5;0.121799!10782-110G8;0.00290772!10726-110A6;0.801906!10018-101C9;0.941563!10086-102B5;0.35254!10182-103D2;0.007898!10165-103B3;0.0323813!10499-107C4;0.0464642!10408-106B3;0.032358!10019-101D1;0.0508551!10068-101I5;0.00862886!10075-102A3;0.0347663!10077-102A5;0.0169497!10727-110A7;0.388059!10775-110G1;0.0209431!10412-106B7;0.00680028!12231-129F8;0.237543!12232-129F9;0.0375653!12233-129G1;0.0644629!12234-129G2;0.0338035!10414-106B9;0.0357942!10170-103B8;0.0276023!10183-103D3;0.069363!10150-102I6;0.0479274!10174-103C3;0.0410512!10155-103A2;0.0256191!10038-101F2;0.0343065!10838-111E1;0.0309242!10759-110E3;0.973559!10514-107E1;0.0894054!10465-106H6;0.0361518!10691-109F7;0.0779103!10843-111E6;0.0908483!10844-111E7;0.468042!11747-123G1;0.426134!11748-123G2;0.88539!11749-123G3;0.144135!11750-123G4;0.282775!11751-123G5;0.259739!11840-124H4;0.122397!11752-123G6;0.0255391!11753-123G7;0.615905!11754-123G8;0.149565!11755-123G9;0.41687!11756-123H1;0.132147!11833-124G6;0.773133!11760-123H5;0.964245!11836-124G9;0.91335!11758-123H3;0.167295!11835-124G8;0.0717283!11762-123H7;0.00783101!11838-124H2;0.0699889!11757-123H2;0.00715023!11759-123H4;0.800115!11761-123H6;0.332606!11842-124H6;0.137193!11837-124H1;0.100968!10568-108B1;0.00133954!13230-141I8;0.965705!13231-141I9;0.0224304!10696-109G3;0.00745836!10493-107B7;0.729586!10494-107B8;0.0700552!10850-111F4;0.510298!10851-111F5;0.339501!10852-111F6;0.52995!10853-111F7;0.170816!10854-111F8;0.574772!10855-111F9;0.408649!10856-111G1;0.558275!10847-111F1;0.562824!10846-111E9;0.746717!10848-111F2;0.498587!10845-111E8;0.461037!10857-111G2;0.0857887!10858-111G3;0.302619!10156-103A3;0.418384!11901-125F2;0.0485926!11902-125F3;0.171411!11903-125F4;0.0272008!10689-109F5;0.00883829!10648-109A9;0.523224!10784-110H1;0.442226!10744-110C6;0.0358429!10772-110F7;0.0135886!10474-106I6;0.0342142!10600-108E6;0.000363916!10684-109E9;0.41425!12226-129F3;0.124253!12227-129F4;0.105507!10508-107D4;0.0224665!10539-107G8;0.237278!10607-108F4;0.515798!10555-107I6;0.0164666!10774-110F9;0.316522!10637-108I7;0.0547272!10663-109C6;0.00600369!10728-110A8;0.301311!10729-110A9;0.209685!10430-106D7;0.0328123!10730-110B1;0.00495237!10813-111B3;0.283053!10812-111B2;0.133045!10037-101F1;0.24774!10172-103C1;0.0487778!10163-103B1;0.0767979!10076-102A4;0.0512273!10073-102A1;0.0452369!10036-101E9;0.130556!10195-103E6;0.0422858!10277-104E7;0.0281069!10434-106E2;0.0573517!10550-107I1;0.00858384!10545-107H5;0.217525!10544-107H4;0.0653409!10704-109H2;0.253538!10510-107D6;0.877057!10558-107I9;0.0175667!10020-101D2;0.237201!10732-110B3;0.0435938!10049-101G4;0.182548!10698-109G5;0.316524!10437-106E5;0.0482797!10417-106C3;0.382057!10035-101E8;0.129329!10171-103B9;0.0526955!10157-103A4;0.0583585!10034-101E7;0.0416888!10072-101I9;0.0537778!10199-103F1;0.123392!10200-103F2;0.210837!10697-109G4;0.0158763!10723-110A3;0.174267!10179-103C8;0.918995!10160-103A7;0.0595238!10180-103C9;0.104231!10162-103A9;0.248356!10021-101D3;0.29221!10840-111E3;0.0154573!10706-109H4;0.0215138!10033-101E6;0.839717!10032-101E5;0.0603728!10490-107B4;0.0450752!10439-106E7;0.234632!10022-101D4;0.0725247!10176-103C5;0.0122614!10469-106I1;0.0664021!10067-101I4;0.142281!10411-106B6;0.00218553!10471-106I3;0.589618!10030-101E3;0.463242!10475-106I7;0.010483!10787-110H4;0.262056!10477-106I9;0.156345!10695-109G2;0.844332!11771-123I7;0.542607!11772-123I8;0.565393!11773-123I9;0.265923!10093-102C3;0.486673!10442-106F1;0.0733609!10442-106F1;0.0105854!10201-103F3;0.0137558!10639-108I9;0.0181753!11843-124H7;0.976942!11841-124H5;0.757328!10693-109F9;0.340794!10436-106E4;0.227504!10483-107A6;0.0173444!10282-104F3;0.0392627!10023-101D5;0.407372!10066-101I3;0.150925!10065-101I2;0.0280967!10800-110I8;0.00988957!10610-108F7;0.359034!10841-111E4;0.510717!10541-107H1;0.0745388!10842-111E5;0.045512!10562-108A4;0.661255!10024-101D6;0.974791!10064-101I1;0.0110786!10609-108F6;0.00179633!10048-101G3;0.283294!10781-110G7;0.0342622!10181-103D1;0.0399732!10159-103A6;0.0174067!10056-101H2;0.0596759!10737-110B8;0.0105893!10025-101D7;0.0127267!10044-101F8;0.483417!10424-106D1;0.0415612!10463-106H4;0.00869009!10616-108G4;0.0834954!10486-107A9;0.000412046!10062-101H8;9.57547e-05!10202-103F4;0.00655721!10158-103A5;0.0699117!10441-106E9;0.0758721!10031-101E4;0.328043!10063-101H9;0.0338594!10063-101H9;0.0994105!11763-123H8;0.00221464!11765-123I1;0.00402036!11768-123I4;0.00265706!10807-111A6;0.00509401!10790-110H7;0.367443!10798-110I6;0.23521!10786-110H3;0.0504475!10591-108D6;0.880704!10593-108D8;0.324978!10590-108D5;0.521723!10026-101D8;0.254766!10096-102C6;0.0416652!10168-103B6;0.212219!10154-103A1;0.0299638!10209-103G2;0.0481778!10061-101H7;0.0132396!10027-101D9;0.00958081!10043-101F7;0.0545323!10783-110G9;0.304429!10028-101E1;0.129062!10060-101H6;0.140772!10203-103F5;0.0361634!10059-101H5;0.0125045!10047-101G2;0.0275508!10029-101E2;0.0782338!10058-101H4;0.0168749!10418-106C4;0.00382289!10492-107B6;0.150632!10694-109G1;0.378734!10797-110I5;0.0638614!10057-101H3;0.00698416!10100-102D1;0.0045585!10055-101H1;0.0179879!10204-103F6;0.00548177!10191-103E2;0.00832252!10563-108A5;0.0383127
|name=9-CGGAAACAA,CNhs11957,BestGuess:FOXO1,3,4.p2.SwissRegulon.nucfreq(0.721285301542419),T:1250.0(25.22%),B:6798.2(16.04%),P:1e-60
|name=9-CGGAAACAA,CNhs11957,BestGuess:FOXO1,3,4.p2.SwissRegulon.nucfreq(0.721285301542419),T:1250.0(25.22%),B:6798.2(16.04%),P:1e-60
|tomtom_result=HAL9#MA0311.1;0;0.000331387;0.15774;0.302526;5;CGGAAACAA;CGGAA;+!YRR1#MA0439.1;1;0.000769765;0.366408;0.302526;9;CGGAAACAA;GCGGAGATAAG;-!FOXF2#MA0030.1;4;0.00105887;0.504023;0.302526;9;CGGAAACAA;CAAACGTAAACAAT;+!EDS1#MA0294.1;0;0.00162749;0.774687;0.302526;9;CGGAAACAA;CGGAAAAAT;+!ETS1#MA0098.1;0;0.00180599;0.859652;0.302526;6;CGGAAACAA;CGGAAA;-!slp1#MA0458.1;2;0.00203375;0.968064;0.302526;9;CGGAAACAA;AATGTAAACAA;-!FOXD1#MA0031.1;-1;0.0022913;1.09066;0.302526;8;CGGAAACAA;GTAAACAT;+!YRM1#MA0438.1;1;0.00299363;1.42497;0.302526;7;CGGAAACAA;ACGGAAAT;+!RGT1#MA0367.1;1;0.0031928;1.51977;0.302526;9;CGGAAACAA;CCGGAAAAACT;-!CEP3#MA0282.1;2;0.00326364;1.55349;0.302526;6;CGGAAACAA;CTCGGAAA;+!YDR520C#MA0422.1;1;0.00356678;1.69779;0.302526;9;CGGAAACAA;CCGGAGATAA;+!SRY#MA0084.1;-1;0.00422722;2.01216;0.316031;8;CGGAAACAA;GTAAACAAT;+!FKH2#MA0297.1;-1;0.00444153;2.11417;0.316031;7;CGGAAACAA;GTAAACA;+!dl_1#MA0022.1;0;0.0049968;2.37848;0.316031;9;CGGAAACAA;CGGAAAAACCCC;-!Eip74EF#MA0026.1;1;0.00508092;2.41852;0.316031;6;CGGAAACAA;CCGGAAG;+!STE12#MA0393.1;-1;0.00581514;2.76801;0.339094;7;CGGAAACAA;TGAAACA;+!HCM1#MA0317.1;-1;0.00662331;3.15269;0.363501;8;CGGAAACAA;ATAAACAA;+!ASG1#MA0275.1;1;0.00772363;3.67645;0.396318;5;CGGAAACAA;CCGGAA;+!STAT1#MA0137.2;7;0.00828502;3.94367;0.396318;8;CGGAAACAA;CATTTCCCGGAAACC;+!id1#MA0120.1;0;0.00928243;4.41844;0.396318;9;CGGAAACAA;CGAAAAGGAAAA;-!RDR1#MA0360.1;2;0.00975881;4.64519;0.396318;6;CGGAAACAA;TGCGGAAC;+!YKL222C#MA0428.1;2;0.00976995;4.6505;0.396318;7;CGGAAACAA;AACGGAAAT;+!YPR196W#MA0437.1;0;0.00976995;4.6505;0.396318;9;CGGAAACAA;CGGAGAAAT;-!ELF5#MA0136.1;1;0.0112931;5.3755;0.4014;8;CGGAAACAA;AAGGAAGTA;-!NDT80#MA0343.1;4;0.0113353;5.39561;0.4014;9;CGGAAACAA;TTTCCGGCCACAAAAACGCAA;+!FOXO3#MA0157.1;0;0.0113446;5.40002;0.4014;8;CGGAAACAA;TGTAAACA;+!SPI1#MA0080.1;0;0.0119188;5.67335;0.4014;6;CGGAAACAA;CGGAAG;+!STB4#MA0391.1;2;0.0121731;5.79439;0.4014;5;CGGAAACAA;CTCGGAA;+!CAT8#MA0280.1;1;0.0124766;5.93887;0.4014;5;CGGAAACAA;CCGGAA;+!HAP1#MA0312.1;0;0.0136601;6.50223;0.41164;8;CGGAAACAA;CGGAGATA;+!FKH1#MA0296.1;5;0.0137412;6.54083;0.41164;9;CGGAAACAA;TGAATTGTAAACAAAGAGGA;+!mirr#MA0233.1;-3;0.0141185;6.7204;0.41164;5;CGGAAACAA;AAACA;+!br_Z4#MA0013.1;1;0.0147055;6.99981;0.415762;9;CGGAAACAA;TAGTAAACAAA;+!GABPA#MA0062.2;1;0.0169088;8.04859;0.451023;9;CGGAAACAA;CCGGAAGTGGC;+!ELK4#MA0076.1;2;0.0171873;8.18114;0.451023;7;CGGAAACAA;ACCGGAAGT;+!Sox5#MA0087.1;-3;0.0174029;8.28379;0.451023;6;CGGAAACAA;AAACAAT;+!ELK1#MA0028.1;4;0.0183626;8.74059;0.454175;6;CGGAAACAA;GAGCCGGAAG;+!Su(H)#MA0085.1;4;0.0184981;8.80511;0.454175;9;CGGAAACAA;CTGTGGGAAACGAGAT;+!ARO80#MA0273.1;9;0.0208069;9.90408;0.497762;9;CGGAAACAA;GATAATTCTCGGCAAGTATGT;+
}}
}}

Latest revision as of 13:40, 7 September 2012

Full Name: 9-CGGAAACAA,CNhs11957,BestGuess:FOXO1,3,4.p2.SwissRegulon.nucfreq(0.721285301542419),T:1250.0(25.22%),B:6798.2(16.04%),P:1e-60

Motif matrix
POACGT
147.51110.043.7548.75
245.0142.51017.545.0
358.75103.75987.5100.0
41052.583.7527.586.25
51087.522.578.7561.25
6928.75130.0135.056.25
7100.0872.5160.0117.5
8845.0116.25167.5121.25
9855.0126.25153.75115.0

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
HAL9#MA0311.100.0003313870.157740.3025265CGGAAACAACGGAA+
YRR1#MA0439.110.0007697650.3664080.3025269CGGAAACAAGCGGAGATAAG-
FOXF2#MA0030.140.001058870.5040230.3025269CGGAAACAACAAACGTAAACAAT+
EDS1#MA0294.100.001627490.7746870.3025269CGGAAACAACGGAAAAAT+
ETS1#MA0098.100.001805990.8596520.3025266CGGAAACAACGGAAA-
slp1#MA0458.120.002033750.9680640.3025269CGGAAACAAAATGTAAACAA-
FOXD1#MA0031.1-10.00229131.090660.3025268CGGAAACAAGTAAACAT+
YRM1#MA0438.110.002993631.424970.3025267CGGAAACAAACGGAAAT+
RGT1#MA0367.110.00319281.519770.3025269CGGAAACAACCGGAAAAACT-
CEP3#MA0282.120.003263641.553490.3025266CGGAAACAACTCGGAAA+
YDR520C#MA0422.110.003566781.697790.3025269CGGAAACAACCGGAGATAA+
SRY#MA0084.1-10.004227222.012160.3160318CGGAAACAAGTAAACAAT+
FKH2#MA0297.1-10.004441532.114170.3160317CGGAAACAAGTAAACA+
dl_1#MA0022.100.00499682.378480.3160319CGGAAACAACGGAAAAACCCC-
Eip74EF#MA0026.110.005080922.418520.3160316CGGAAACAACCGGAAG+
STE12#MA0393.1-10.005815142.768010.3390947CGGAAACAATGAAACA+
HCM1#MA0317.1-10.006623313.152690.3635018CGGAAACAAATAAACAA+
ASG1#MA0275.110.007723633.676450.3963185CGGAAACAACCGGAA+
STAT1#MA0137.270.008285023.943670.3963188CGGAAACAACATTTCCCGGAAACC+
id1#MA0120.100.009282434.418440.3963189CGGAAACAACGAAAAGGAAAA-
RDR1#MA0360.120.009758814.645190.3963186CGGAAACAATGCGGAAC+
YKL222C#MA0428.120.009769954.65050.3963187CGGAAACAAAACGGAAAT+
YPR196W#MA0437.100.009769954.65050.3963189CGGAAACAACGGAGAAAT-
ELF5#MA0136.110.01129315.37550.40148CGGAAACAAAAGGAAGTA-
NDT80#MA0343.140.01133535.395610.40149CGGAAACAATTTCCGGCCACAAAAACGCAA+
FOXO3#MA0157.100.01134465.400020.40148CGGAAACAATGTAAACA+
SPI1#MA0080.100.01191885.673350.40146CGGAAACAACGGAAG+
STB4#MA0391.120.01217315.794390.40145CGGAAACAACTCGGAA+
CAT8#MA0280.110.01247665.938870.40145CGGAAACAACCGGAA+
HAP1#MA0312.100.01366016.502230.411648CGGAAACAACGGAGATA+
FKH1#MA0296.150.01374126.540830.411649CGGAAACAATGAATTGTAAACAAAGAGGA+
mirr#MA0233.1-30.01411856.72040.411645CGGAAACAAAAACA+
br_Z4#MA0013.110.01470556.999810.4157629CGGAAACAATAGTAAACAAA+
GABPA#MA0062.210.01690888.048590.4510239CGGAAACAACCGGAAGTGGC+
ELK4#MA0076.120.01718738.181140.4510237CGGAAACAAACCGGAAGT+
Sox5#MA0087.1-30.01740298.283790.4510236CGGAAACAAAAACAAT+
ELK1#MA0028.140.01836268.740590.4541756CGGAAACAAGAGCCGGAAG+
Su(H)#MA0085.140.01849818.805110.4541759CGGAAACAACTGTGGGAAACGAGAT+
ARO80#MA0273.190.02080699.904080.4977629CGGAAACAAGATAATTCTCGGCAAGTATGT+
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