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MacroAPE 1083:6-YWARCGCN: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;62.25;194.718;47.808;192.726!2;270.414;0.498;0.498;226.59!3;309.258;56.274;115.038;17.43!4;211.65;0.498;157.368;128.982!5;0.498;496.506;0.49...")
 
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133!10717-109I6;0.0809194!10455-106G5;0.00262425!10534-107G3;0.0955187!10429-106D6;0.0108993!10464-106H5;0.0226503!10827-111C8;0.00290834!10789-110H6;0.109032!10828-111C9;0.0953842!10788-110H5;0.276703!10792-110H9;0.0115596!10765-110E9;0.247178!10829-111D1;0.0788587!10830-111D2;0.0318275!10831-111D3;0.229009!10832-111D4;0.0541793!10833-111D5;0.0667488!10764-110E8;0.0265487!10770-110F5;0.0813281!10399-106A3;0.115539!10400-106A4;0.0627572!10405-106A9;0.0733352!10834-111D6;0.0605624!10835-111D7;0.0556884!10836-111D8;0.0337297!10837-111D9;0.083875!10699-109G6;0.0272344!10802-111A1;0.0419169!10796-110I4;0.132377!10010-101C1;0.043187!10810-111A9;0.0450906!10421-106C7;0.122235!10708-109H6;0.0473607!12235-129G3;0.07677!12236-129G4;0.30348!12237-129G5;0.00182931!10167-103B5;0.482112!10151-102I7;0.163721!10428-106D5;0.194479!10795-110I3;0.407114!10805-111A4;0.026889!10052-101G7;0.0270087!10189-103D9;0.0729236!10589-108D4;0.388051!10425-106D2;0.00076433!10427-106D4;0.476595!10702-109G9;0.0162593!10432-106D9;0.03677!10496-107C1;0.0555243!10718-109I7;0.128478!10011-101C2;0.0207386!10053-101G8;0.0719245!10686-109F2;0.688104!10084-102B3;0.785796!10012-101C3;0.109882!10085-102B4;0.109432!10482-107A5;0.490122!10419-106C5;0.0618502!10080-102A8;0.0416728!10760-110E4;0.260829!10709-109H7;0.121925!10710-109H8;0.0308867!10703-109H1;0.00769593!10719-109I8;0.069431!10642-109A3;0.00344149!10177-103C6;0.177195!10164-103B2;0.254135!10173-103C2;0.186557!10166-103B4;0.518129!10083-102B2;0.357474!10188-103D8;0.225823!10552-107I3;0.0921162!10553-107I4;0.00424495!10013-101C4;0.17134!10536-107G5;0.075637!10618-108G6;0.389646!10423-106C9;0.015667!10785-110H2;0.00204501!12238-129G6;0.0666851!12239-129G7;0.112267!12240-129G8;0.328963!10416-106C2;0.160942!10801-110I9;0.00522814!10766-110F1;0.184917!10824-111C5;0.180867!10825-111C6;0.0223571!10826-111C7;0.0292081!10454-106G4;0.0251893!10409-106B4;0.0310666!10638-108I8;0.0753836!10636-108I6;0.0283473!10513-107D9;0.0459876!10420-106C6;0.0609628!10082-102B1;0.0849486!10014-101C5;0.198764!10070-101I7;0.0775789!10452-106G2;0.090619!10453-106G3;0.0745442!10449-106F8;0.0871142!10042-101F6;0.0795367!10069-101I6;0.147437!10193-103E4;0.0970162!10631-108I1;0.170705!10438-106E6;0.0268745!10488-107B2;0.0377738!10196-103E7;0.070148!10071-101I8;0.0433571!10071-101I8;0.272051!10041-101F5;0.642441!10451-106G1;0.140859!10450-106F9;0.0739908!10604-108F1;0.110106!10605-108F2;0.0324571!10606-108F3;0.100551!10603-108E9;0.0302781!10497-107C2;0.0492135!10448-106F7;0.30785!10643-109A4;0.103779!10426-106D3;0.196037!10431-106D8;0.00841614!10197-103E8;0.0319968!10443-106F2;0.0526811!10815-111B5;0.248586!10816-111B6;0.00487664!10817-111B7;0.00186397!10015-101C6;0.00683541!10410-106B5;0.104756!10054-101G9;0.282602!10758-110E2;0.100992!10711-109H9;0.236492!10040-101F4;0.0132749!10470-106I2;0.131485!10415-106C1;0.00370499!10198-103E9;0.106643!10614-108G2;0.0965944!10612-108F9;0.105452!10549-107H9;0.228426!10615-108G3;0.343915!10487-107B1;0.113745!10433-106E1;0.110897!10688-109F4;0.150266!10444-106F3;0.0171775!10444-106F3;0.369074!10485-107A8;0.376551!10413-106B8;0.061523!10175-103C4;0.0277797!10161-103A8;0.191802!12131-128D7;0.175826!10624-108H3;0.0538023!10712-109I1;0.668108!10205-103F7;0.00435458!10206-103F8;0.0527691!10207-103F9;0.0639031!10050-101G5;0.0949651!10051-101G6;0.234025!10016-101C7;0.0377213!10046-101G1;0.0169422!10778-110G4;0.0969761!10633-108I3;0.0713345!10818-111B8;0.139553!10819-111B9;0.0306801!10820-111C1;0.0384762!10484-107A7;0.0261367!10808-111A7;0.510185!10169-103B7;0.0119261!10153-102I9;0.258537!13425-144D5;0.186845!13433-144E4;0.0351744!13437-144E8;0.0294885!11904-125F5;0.012113!11905-125F6;0.0318081!10039-101F3;0.0406711!10791-110H8;0.138821!10017-101C8;0.0821965!10045-101F9;0.00189404!10509-107D5;0.0134642!10839-111E2;0.195418!10692-109F8;0.926488!10079-102A7;0.029549!10078-102A6;0.12145!10721-110A1;0.0624023!10569-108B2;0.0172451!10570-108B3;0.0277632!10571-108B4;0.00279864!10647-109A8;0.0311296!10752-110D5;0.114366!10782-110G8;0.14126!10726-110A6;0.0679343!10018-101C9;0.305791!10086-102B5;0.0751882!10182-103D2;0.98856!10165-103B3;0.243561!10499-107C4;0.195563!10408-106B3;0.115779!10019-101D1;0.0169169!10068-101I5;0.23308!10075-102A3;0.187561!10077-102A5;0.189328!10727-110A7;0.488687!10775-110G1;0.0715406!10412-106B7;0.130203!12231-129F8;0.182483!12232-129F9;0.0667102!12233-129G1;0.0761659!12234-129G2;0.0467346!10414-106B9;0.125665!10170-103B8;0.242886!10183-103D3;0.252028!10150-102I6;0.207189!10174-103C3;0.153998!10155-103A2;0.18389!10038-101F2;0.137583!10838-111E1;0.109062!10759-110E3;0.00586648!10514-107E1;0.0413858!10465-106H6;0.143116!10691-109F7;0.384298!10843-111E6;0.695583!10844-111E7;0.07102!11747-123G1;0.0571586!11748-123G2;0.244533!11749-123G3;0.157412!11750-123G4;0.169428!11751-123G5;0.0446059!11840-124H4;0.0412692!11752-123G6;0.0373673!11753-123G7;0.00145039!11754-123G8;0.0667!11755-123G9;0.280353!11756-123H1;0.548621!11833-124G6;0.105642!11760-123H5;0.00244003!11836-124G9;0.0446778!11758-123H3;0.388275!11835-124G8;0.00913663!11762-123H7;0.0314672!11838-124H2;0.00799842!11757-123H2;0.00463092!11759-123H4;0.280933!11761-123H6;0.0929539!11842-124H6;0.0185729!11837-124H1;0.120013!10568-108B1;0.0314342!13230-141I8;0.834563!13231-141I9;0.263477!10696-109G3;0.204017!10493-107B7;0.0518256!10494-107B8;0.00845082!10850-111F4;0.183255!10851-111F5;0.0653176!10852-111F6;0.45066!10853-111F7;0.553837!10854-111F8;0.0393609!10855-111F9;0.300704!10856-111G1;0.4101!10847-111F1;0.147898!10846-111E9;0.447453!10848-111F2;0.615961!10845-111E8;0.0752678!10857-111G2;0.202338!10858-111G3;0.0850289!10156-103A3;0.609366!11901-125F2;0.211377!11902-125F3;0.0225913!11903-125F4;0.0219601!10689-109F5;0.0486123!10648-109A9;0.239462!10784-110H1;0.232577!10744-110C6;0.163113!10772-110F7;0.117644!10474-106I6;0.0302242!10600-108E6;0.643973!10684-109E9;0.060339!12226-129F3;0.747768!12227-129F4;0.623038!10508-107D4;0.461841!10539-107G8;0.01212!10607-108F4;0.00650053!10555-107I6;0.0061072!10774-110F9;0.00550516!10637-108I7;0.00456265!10663-109C6;0.121785!10728-110A8;0.00566568!10729-110A9;0.0104314!10430-106D7;0.2316!10730-110B1;0.0346337!10813-111B3;0.000503573!10812-111B2;0.6123!10037-101F1;0.107816!10172-103C1;0.136509!10163-103B1;0.374684!10076-102A4;0.234167!10073-102A1;0.127114!10036-101E9;0.708745!10195-103E6;0.153202!10277-104E7;0.169361!10434-106E2;0.106914!10550-107I1;0.173116!10545-107H5;0.00835841!10544-107H4;0.0780908!10704-109H2;0.0738791!10510-107D6;0.0111313!10558-107I9;0.0546762!10020-101D2;0.272763!10732-110B3;0.270248!10049-101G4;0.263738!10698-109G5;0.0704354!10437-106E5;0.010098!10417-106C3;3.93321e-05!10035-101E8;0.10603!10171-103B9;0.127825!10157-103A4;0.19288!10034-101E7;0.192509!10072-101I9;0.117048!10199-103F1;0.956966!10200-103F2;0.0378475!10697-109G4;0.0617171!10723-110A3;0.0319392!10179-103C8;0.169827!10160-103A7;0.185889!10180-103C9;0.288384!10162-103A9;0.637261!10021-101D3;0.494242!10840-111E3;0.272567!10706-109H4;0.0576002!10033-101E6;0.627391!10032-101E5;0.126392!10490-107B4;0.136246!10439-106E7;0.0313542!10022-101D4;0.18718!10176-103C5;0.031253!10469-106I1;0.207657!10067-101I4;0.0755915!10411-106B6;0.419417!10471-106I3;0.799565!10030-101E3;0.15944!10475-106I7;0.0933083!10787-110H4;0.00493211!10477-106I9;0.0100173!10695-109G2;0.536269!11771-123I7;0.188014!11772-123I8;0.304161!11773-123I9;0.296673!10093-102C3;0.361739!10442-106F1;0.0531862!10442-106F1;0.349646!10201-103F3;0.208093!10639-108I9;0.176254!11843-124H7;0.123902!11841-124H5;0.707861!10693-109F9;0.188116!10436-106E4;0.081406!10483-107A6;0.0136293!10282-104F3;0.088804!10023-101D5;0.143235!10066-101I3;0.0365376!10065-101I2;0.0557024!10800-110I8;0.139536!10610-108F7;0.0970575!10841-111E4;0.121715!10541-107H1;0.0376412!10842-111E5;0.4807!10562-108A4;0.00877026!10024-101D6;0.000327372!10064-101I1;0.13297!10609-108F6;0.352584!10048-101G3;0.135478!10781-110G7;0.0619554!10181-103D1;0.139666!10159-103A6;0.177353!10056-101H2;0.0933657!10737-110B8;0.120877!10025-101D7;0.286539!10044-101F8;0.142536!10424-106D1;0.0938023!10463-106H4;0.0873326!10616-108G4;0.420783!10486-107A9;0.665709!10062-101H8;0.364371!10202-103F4;0.322335!10158-103A5;0.0326553!10441-106E9;0.140597!10031-101E4;0.0577604!10063-101H9;0.115267!10063-101H9;0.840562!11763-123H8;0.190521!11765-123I1;0.136987!11768-123I4;0.0383498!10807-111A6;0.214363!10790-110H7;0.276982!10798-110I6;0.161629!10786-110H3;0.242932!10591-108D6;0.156724!10593-108D8;0.0855994!10590-108D5;0.396585!10026-101D8;0.0259969!10096-102C6;0.560913!10168-103B6;0.0161874!10154-103A1;0.204256!10209-103G2;0.21948!10061-101H7;0.0832798!10027-101D9;0.26379!10043-101F7;0.0307827!10783-110G9;0.688841!10028-101E1;0.00687674!10060-101H6;0.586785!10203-103F5;0.673861!10059-101H5;0.111372!10047-101G2;0.089612!10029-101E2;0.150224!10058-101H4;0.101886!10418-106C4;0.0938205!10492-107B6;0.141232!10694-109G1;0.0145583!10797-110I5;0.212295!10057-101H3;0.406186!10100-102D1;0.384813!10055-101H1;0.0357144!10204-103F6;0.148531!10191-103E2;0.0502092!10563-108A5;0.134376
|name=6-YWARCGCN,CNhs13552,BestGuess:CXXC1_si_HM09(0.671466377623115),T:498.0(34.42%),B:9694.8(21.38%),P:1e-29
|name=6-YWARCGCN,CNhs13552,BestGuess:CXXC1_si_HM09(0.671466377623115),T:498.0(34.42%),B:9694.8(21.38%),P:1e-29
|tomtom_result=STP3#MA0396.1;1;0.00175449;0.835138;1;8;CAAACGCC;GCTAGCGCA;+!MBP1::SWI6#MA0330.1;-2;0.00828985;3.94597;1;6;CAAACGCC;AACGCGT;-!TOD6#MA0350.1;0;0.0107426;5.11347;1;8;CAAACGCC;AAAACGCGATGAGCTGTGCCT;-!STP4#MA0397.1;1;0.0152151;7.24238;1;8;CAAACGCC;GATAGCGCA;+!YAP6#MA0418.1;12;0.0169639;8.07482;1;8;CAAACGCC;GGTCTGATTACGTAAGCGAC;+!MBP1#MA0329.1;-2;0.0180453;8.58958;1;6;CAAACGCC;TACGCGT;-
}}
}}

Latest revision as of 13:29, 7 September 2012

Full Name: 6-YWARCGCN,CNhs13552,BestGuess:CXXC1_si_HM09(0.671466377623115),T:498.0(34.42%),B:9694.8(21.38%),P:1e-29

Motif matrix
POACGT
162.25194.71847.808192.726
2270.4140.4980.498226.59
3309.25856.274115.03817.43
4211.650.498157.368128.982
50.498496.5060.4980.498
60.4980.498496.5060.498
7100.098217.62678.186102.09
8102.588148.902147.90698.604

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
STP3#MA0396.110.001754490.83513818CAAACGCCGCTAGCGCA+
MBP1::SWI6#MA0330.1-20.008289853.9459716CAAACGCCAACGCGT-
TOD6#MA0350.100.01074265.1134718CAAACGCCAAAACGCGATGAGCTGTGCCT-
STP4#MA0397.110.01521517.2423818CAAACGCCGATAGCGCA+
YAP6#MA0418.1120.01696398.0748218CAAACGCCGGTCTGATTACGTAAGCGAC+
MBP1#MA0329.1-20.01804538.5895816CAAACGCCTACGCGT-
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