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MacroAPE 1083:Motif CNGGTA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;1008;0;0!02;252;252;252;252!03;0;0;1008;0!04;0;0;1008;0!05;0;0;0;1008!06;1008;0;0;0 |macroape_1083_sample_pvalues=11376-118A8;0.00924866...")
 
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!11600-120H7;0.000583101!11681-122H7;5.27397e-06!11216-116B1;0.000117482!12179-129A1;1.67771e-05!12180-129A2;0.0382875!12181-129A3;0.0751347!12176-128I7;0.153642!12177-128I8;0.0561662!12182-129A4;0.0330657!12183-129A5;0.087466!12184-129A6;0.0390016!10809-111A8;0.12486!10597-108E3;0.754395!10717-109I6;0.093224!10455-106G5;0.0282732!10534-107G3;0.319217!10429-106D6;0.801677!10464-106H5;0.686889!10827-111C8;0.583722!10789-110H6;0.601988!10828-111C9;0.512843!10788-110H5;0.744586!10792-110H9;0.620334!10765-110E9;0.484938!10829-111D1;0.529267!10830-111D2;0.618958!10831-111D3;0.87029!10832-111D4;0.757285!10833-111D5;0.507775!10764-110E8;0.434587!10770-110F5;0.386878!10399-106A3;0.45278!10400-106A4;0.516208!10405-106A9;0.530025!10834-111D6;0.602459!10835-111D7;0.587551!10836-111D8;0.652173!10837-111D9;0.899255!10699-109G6;0.859087!10802-111A1;0.9152!10796-110I4;0.555822!10010-101C1;0.138954!10810-111A9;0.543014!10421-106C7;0.632974!10708-109H6;0.684643!12235-129G3;0.616288!12236-129G4;0.0710389!12237-129G5;0.076873!10167-103B5;0.0241637!10151-102I7;0.866186!10428-106D5;0.924784!10795-110I3;0.159336!10805-111A4;0.795589!10052-101G7;0.676612!10189-103D9;0.93685!10589-108D4;0.851568!10425-106D2;0.0848402!10427-106D4;0.301516!10702-109G9;0.611917!10432-106D9;0.353412!10496-107C1;0.0191154!10718-109I7;0.0636843!10011-101C2;0.314321!10053-101G8;0.807479!10686-109F2;0.0823938!10084-102B3;0.000532492!10012-101C3;0.928887!10085-102B4;0.974397!10482-107A5;0.556751!10419-106C5;0.133812!10080-102A8;0.124166!10760-110E4;0.517428!10709-109H7;0.055386!10710-109H8;0.210735!10703-109H1;0.279661!10719-109I8;0.777223!10642-109A3;0.281513!10177-103C6;0.188741!10164-103B2;0.956382!10173-103C2;0.928383!10166-103B4;0.815081!10083-102B2;0.617112!10188-103D8;0.872075!10552-107I3;0.984118!10553-107I4;0.963553!10013-101C4;0.00250868!10536-107G5;0.718114!10618-108G6;0.0156778!10423-106C9;0.456879!10785-110H2;0.248039!12238-129G6;0.193449!12239-129G7;0.305988!12240-129G8;0.681385!10416-106C2;0.158638!10801-110I9;0.302344!10766-110F1;0.65451!10824-111C5;0.472828!10825-111C6;0.83455!10826-111C7;0.909108!10454-106G4;0.842098!10409-106B4;0.869424!10638-108I8;0.573954!10636-108I6;0.62495!10513-107D9;0.0433841!10420-106C6;0.0923562!10082-102B1;0.555747!10014-101C5;0.560547!10070-101I7;0.559087!10452-106G2;0.852332!10453-106G3;0.450117!10449-106F8;0.660749!10042-101F6;0.632535!10069-101I6;0.958962!10193-103E4;0.200847!10631-108I1;0.944239!10438-106E6;0.581085!10488-107B2;0.0450962!10196-103E7;0.867151!10071-101I8;0.675962!10071-101I8;0.569183!10041-101F5;0.445783!10451-106G1;0.730494!10450-106F9;0.847049!10604-108F1;0.896076!10605-108F2;0.432329!10606-108F3;0.549543!10603-108E9;0.321396!10497-107C2;0.47067!10448-106F7;0.0981546!10643-109A4;0.114026!10426-106D3;0.026763!10431-106D8;0.00607039!10197-103E8;0.121286!10443-106F2;0.638408!10815-111B5;0.024056!10816-111B6;0.952547!10817-111B7;0.840286!10015-101C6;0.92964!10410-106B5;0.568624!10054-101G9;0.341223!10758-110E2;0.981023!10711-109H9;0.179271!10040-101F4;0.408309!10470-106I2;0.978225!10415-106C1;0.0013189!10198-103E9;0.0638797!10614-108G2;0.752189!10612-108F9;0.26861!10549-107H9;0.0601054!10615-108G3;0.502222!10487-107B1;0.750093!10433-106E1;0.331022!10688-109F4;0.98165!10444-106F3;0.00659241!10444-106F3;0.166841!10485-107A8;0.128868!10413-106B8;0.0508942!10175-103C4;0.0116103!10161-103A8;0.865591!12131-128D7;0.76281!10624-108H3;0.228227!10712-109I1;0.00451902!10205-103F7;0.79204!10206-103F8;0.29636!10207-103F9;0.397165!10050-101G5;0.202862!10051-101G6;0.547982!10016-101C7;0.666886!10046-101G1;0.307103!10778-110G4;0.219068!10633-108I3;0.00847255!10818-111B8;0.29743!10819-111B9;0.396036!10820-111C1;0.393913!10484-107A7;0.382676!10808-111A7;0.209496!10169-103B7;0.738362!10153-102I9;0.950767!13425-144D5;0.952613!13433-144E4;0.49359!13437-144E8;0.585137!11904-125F5;0.426321!11905-125F6;0.0238059!10039-101F3;0.0169334!10791-110H8;0.971522!10017-101C8;0.072304!10045-101F9;0.131782!10509-107D5;0.920951!10839-111E2;0.526193!10692-109F8;0.550111!10079-102A7;0.198864!10078-102A6;0.524762!10721-110A1;0.515418!10569-108B2;0.399508!10570-108B3;0.512849!10571-108B4;0.808215!10647-109A8;0.216672!10752-110D5;0.355041!10782-110G8;0.918134!10726-110A6;0.000516407!10018-101C9;0.161745!10086-102B5;0.00796847!10182-103D2;0.387426!10165-103B3;0.81929!10499-107C4;0.857297!10408-106B3;0.758886!10019-101D1;0.0150992!10068-101I5;0.591642!10075-102A3;0.958503!10077-102A5;0.540019!10727-110A7;0.446101!10775-110G1;0.439073!10412-106B7;0.247161!12231-129F8;0.00274134!12232-129F9;0.00203127!12233-129G1;0.0532956!12234-129G2;0.0736659!10414-106B9;0.00768859!10170-103B8;0.288939!10183-103D3;0.833854!10150-102I6;0.872861!10174-103C3;0.979505!10155-103A2;0.754369!10038-101F2;0.984945!10838-111E1;0.982749!10759-110E3;0.356581!10514-107E1;0.685096!10465-106H6;0.377357!10691-109F7;0.874646!10843-111E6;0.172261!10844-111E7;0.61837!11747-123G1;0.917766!11748-123G2;0.000554638!11749-123G3;0.000401504!11750-123G4;0.0162268!11751-123G5;0.0571271!11840-124H4;0.079088!11752-123G6;0.0861197!11753-123G7;0.130478!11754-123G8;0.00417332!11755-123G9;7.65274e-05!11756-123H1;0.00538675!11833-124G6;0.00777375!11760-123H5;0.135758!11836-124G9;0.00996957!11758-123H3;0.00101356!11835-124G8;0.0427614!11762-123H7;0.0899557!11838-124H2;0.290191!11757-123H2;0.516597!11759-123H4;0.127723!11761-123H6;0.00725562!11842-124H6;0.190532!11837-124H1;0.0353855!10568-108B1;0.0881983!13230-141I8;0.0024328!13231-141I9;0.0053659!10696-109G3;0.00214818!10493-107B7;3.9989e-05!10494-107B8;0.662382!10850-111F4;0.647553!10851-111F5;0.977324!10852-111F6;0.666043!10853-111F7;0.420274!10854-111F8;0.801324!10855-111F9;0.418604!10856-111G1;0.0455399!10847-111F1;0.860169!10846-111E9;0.715831!10848-111F2;0.59445!10845-111E8;0.789696!10857-111G2;0.510851!10858-111G3;0.698316!10156-103A3;0.810678!11901-125F2;0.994938!11902-125F3;0.00839791!11903-125F4;0.0894158!10689-109F5;0.0490563!10648-109A9;0.330409!10784-110H1;0.215256!10744-110C6;0.0521945!10772-110F7;0.460312!10474-106I6;0.403569!10600-108E6;0.234685!10684-109E9;0.102856!12226-129F3;0.00222734!12227-129F4;0.00052317!10508-107D4;0.56595!10539-107G8;0.250291!10607-108F4;0.08172!10555-107I6;0.580514!10774-110F9;0.0764798!10637-108I7;0.815853!10663-109C6;0.28219!10728-110A8;0.244528!10729-110A9;0.167682!10430-106D7;0.0026563!10730-110B1;0.876013!10813-111B3;0.578337!10812-111B2;0.000328792!10037-101F1;0.0119657!10172-103C1;0.930727!10163-103B1;0.805574!10076-102A4;0.956269!10073-102A1;0.99897!10036-101E9;0.311497!10195-103E6;0.989753!10277-104E7;0.968524!10434-106E2;0.61095!10550-107I1;0.101285!10545-107H5;0.295287!10544-107H4;0.00141135!10704-109H2;0.0477796!10510-107D6;0.0040075!10558-107I9;0.00416738!10020-101D2;0.000958104!10732-110B3;0.482832!10049-101G4;0.101707!10698-109G5;3.8332e-14!10437-106E5;0.292037!10417-106C3;0.562447!10035-101E8;0.00201706!10171-103B9;0.962852!10157-103A4;0.950681!10034-101E7;0.980667!10072-101I9;0.990667!10199-103F1;0.341222!10200-103F2;0.0806227!10697-109G4;0.848205!10723-110A3;0.903714!10179-103C8;0.000138411!10160-103A7;0.773274!10180-103C9;0.840367!10162-103A9;0.729118!10021-101D3;0.482388!10840-111E3;0.708567!10706-109H4;0.531716!10033-101E6;0.585267!10032-101E5;0.950649!10490-107B4;0.964157!10439-106E7;0.396753!10022-101D4;0.112419!10176-103C5;0.946113!10469-106I1;0.897495!10067-101I4;0.145576!10411-106B6;0.400584!10471-106I3;0.194043!10030-101E3;0.451113!10475-106I7;0.987048!10787-110H4;0.884573!10477-106I9;0.416786!10695-109G2;0.00332273!11771-123I7;1.42766e-05!11772-123I8;0.27543!11773-123I9;0.405251!10093-102C3;0.513446!10442-106F1;0.0222529!10442-106F1;0.230416!10201-103F3;0.0808776!10639-108I9;0.629137!11843-124H7;6.48652e-05!11841-124H5;0.348025!10693-109F9;0.285163!10436-106E4;0.0615247!10483-107A6;0.00725549!10282-104F3;0.00423257!10023-101D5;0.844235!10066-101I3;0.515208!10065-101I2;0.172901!10800-110I8;0.767204!10610-108F7;0.448552!10841-111E4;0.645672!10541-107H1;0.541837!10842-111E5;0.624192!10562-108A4;0.439867!10024-101D6;0.114371!10064-101I1;0.279926!10609-108F6;0.55113!10048-101G3;0.00472517!10781-110G7;0.364767!10181-103D1;0.276088!10159-103A6;0.761542!10056-101H2;0.79231!10737-110B8;0.475562!10025-101D7;0.00165461!10044-101F8;0.822087!10424-106D1;0.546409!10463-106H4;0.685475!10616-108G4;0.0181484!10486-107A9;0.00112414!10062-101H8;0.0407583!10202-103F4;0.922115!10158-103A5;0.247857!10441-106E9;0.733435!10031-101E4;0.30748!10063-101H9;0.96947!10063-101H9;0.284487!11763-123H8;0.543009!11765-123I1;0.0260557!11768-123I4;0.062099!10807-111A6;0.0512665!10790-110H7;0.433404!10798-110I6;0.856697!10786-110H3;0.169715!10591-108D6;0.282796!10593-108D8;0.250286!10590-108D5;0.184095!10026-101D8;0.471523!10096-102C6;0.971019!10168-103B6;0.672804!10154-103A1;0.959368!10209-103G2;0.796587!10061-101H7;0.579617!10027-101D9;0.822808!10043-101F7;0.0545045!10783-110G9;0.354008!10028-101E1;0.362569!10060-101H6;0.09046!10203-103F5;0.794132!10059-101H5;0.663279!10047-101G2;0.823873!10029-101E2;0.147651!10058-101H4;0.303441!10418-106C4;0.830754!10492-107B6;0.0359323!10694-109G1;0.693476!10797-110I5;3.36369e-08!10057-101H3;0.797224!10100-102D1;0.786011!10055-101H1;0.66668!10204-103F6;0.302998!10191-103E2;0.353794!10563-108A5;0.893733
|name=motif_CNGGTA
|name=motif_CNGGTA
|tomtom_result=YDR026C#MA0421.1;2;0.00134818;0.641732;1;6;CAGGTA;GCCGGGTAAA;-!REB1#MA0363.1;1;0.0031204;1.48531;1;6;CAGGTA;CCGGGTAAC;-!MOT3#MA0340.1;0;0.00731664;3.48272;1;6;CAGGTA;TAGGCA;+!Ar#MA0007.1;2;0.00810216;3.85663;1;6;CAGGTA;GGCGGGTACACGATGTTCTTAT;-!SWI5#MA0402.1;2;0.0135425;6.44623;1;6;CAGGTA;TGCTGGTT;+!ovo#MA0126.1;1;0.0163076;7.76243;1;6;CAGGTA;ACTGTTACT;-!prd#MA0239.1;1;0.0163076;7.76243;1;6;CAGGTA;ACTGTTACT;-!myb.Ph3#MA0054.1;3;0.0192682;9.17168;1;6;CAGGTA;AAACGGTTA;-
}}
}}

Latest revision as of 12:33, 7 September 2012

Full Name: motif_CNGGTA

Motif matrix
POACGT
010100800
02252252252252
030010080
040010080
050001008
061008000

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
YDR026C#MA0421.120.001348180.64173216CAGGTAGCCGGGTAAA-
REB1#MA0363.110.00312041.4853116CAGGTACCGGGTAAC-
MOT3#MA0340.100.007316643.4827216CAGGTATAGGCA+
Ar#MA0007.120.008102163.8566316CAGGTAGGCGGGTACACGATGTTCTTAT-
SWI5#MA0402.120.01354256.4462316CAGGTATGCTGGTT+
ovo#MA0126.110.01630767.7624316CAGGTAACTGTTACT-
prd#MA0239.110.01630767.7624316CAGGTAACTGTTACT-
myb.Ph3#MA0054.130.01926829.1716816CAGGTAAAACGGTTA-
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