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MacroAPE 1083:GFI1 f1: Difference between revisions

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28I7;4.78457e-06!12177-128I8;4.40365e-06!12182-129A4;1.24138e-05!12183-129A5;3.11243e-05!12184-129A6;1.33009e-05!10809-111A8;2.72722e-05!10597-108E3;0.16853!10717-109I6;0.101546!10455-106G5;0.413915!10534-107G3;0.508057!10429-106D6;0.505805!10464-106H5;0.23204!10827-111C8;0.908671!10789-110H6;0.19091!10828-111C9;0.158907!10788-110H5;0.134692!10792-110H9;0.0692704!10765-110E9;0.0087598!10829-111D1;0.0965122!10830-111D2;0.192009!10831-111D3;0.071004!10832-111D4;0.308632!10833-111D5;0.266967!10764-110E8;0.228268!10770-110F5;0.195139!10399-106A3;0.0298526!10400-106A4;0.039492!10405-106A9;0.0606095!10834-111D6;0.0314313!10835-111D7;0.162245!10836-111D8;0.0288922!10837-111D9;0.328247!10699-109G6;0.0646193!10802-111A1;0.229463!10796-110I4;0.251941!10010-101C1;0.368447!10810-111A9;0.587719!10421-106C7;0.509583!10708-109H6;0.651169!12235-129G3;0.0528019!12236-129G4;0.314359!12237-129G5;0.286915!10167-103B5;0.304419!10151-102I7;0.142079!10428-106D5;0.0801228!10795-110I3;0.287159!10805-111A4;0.445024!10052-101G7;0.0853239!10189-103D9;0.934685!10589-108D4;0.64603!10425-106D2;0.3153!10427-106D4;0.0121638!10702-109G9;0.65687!10432-106D9;0.486281!10496-107C1;0.107928!10718-109I7;0.321475!10011-101C2;0.0246177!10053-101G8;0.803292!10686-109F2;7.39428e-05!10084-102B3;0.416571!10012-101C3;0.0317327!10085-102B4;0.0481719!10482-107A5;0.0316867!10419-106C5;0.516054!10080-102A8;0.362844!10760-110E4;0.618848!10709-109H7;0.830632!10710-109H8;0.394066!10703-109H1;0.114179!10719-109I8;0.0926947!10642-109A3;0.00411523!10177-103C6;0.00384912!10164-103B2;0.215525!10173-103C2;0.107286!10166-103B4;0.0405857!10083-102B2;0.0445356!10188-103D8;0.0478317!10552-107I3;0.0893655!10553-107I4;0.984873!10013-101C4;0.0576501!10536-107G5;0.784695!10618-108G6;0.671776!10423-106C9;0.369475!10785-110H2;0.723518!12238-129G6;0.252754!12239-129G7;0.625683!12240-129G8;0.903556!10416-106C2;0.267834!10801-110I9;0.650625!10766-110F1;0.0227882!10824-111C5;0.0210279!10825-111C6;0.0991833!10826-111C7;0.0964869!10454-106G4;0.0747929!10409-106B4;0.1561!10638-108I8;0.102199!10636-108I6;0.530407!10513-107D9;0.231529!10420-106C6;0.240653!10082-102B1;0.268771!10014-101C5;0.79906!10070-101I7;0.789394!10452-106G2;0.823845!10453-106G3;0.657645!10449-106F8;0.917077!10042-101F6;0.747246!10069-101I6;0.0884023!10193-103E4;0.695218!10631-108I1;0.0936889!10438-106E6;0.838796!10488-107B2;0.900954!10196-103E7;0.365726!10071-101I8;0.923846!10071-101I8;0.492505!10041-101F5;0.0222!10451-106G1;0.334692!10450-106F9;0.0774142!10604-108F1;0.0113577!10605-108F2;0.91765!10606-108F3;0.5529!10603-108E9;0.751496!10497-107C2;0.644176!10448-106F7;0.773512!10643-109A4;0.348165!10426-106D3;0.489493!10431-106D8;0.282284!10197-103E8;0.144716!10443-106F2;0.670126!10815-111B5;0.0819918!10816-111B6;0.319022!10817-111B7;0.322826!10015-101C6;0.430994!10410-106B5;0.770285!10054-101G9;0.832395!10758-110E2;0.100684!10711-109H9;0.60038!10040-101F4;0.473651!10470-106I2;0.0597936!10415-106C1;0.0656887!10198-103E9;0.298148!10614-108G2;0.717988!10612-108F9;0.769241!10549-107H9;0.552089!10615-108G3;0.320119!10487-107B1;0.110954!10433-106E1;0.510769!10688-109F4;0.0974122!10444-106F3;0.29545!10444-106F3;0.127849!10485-107A8;0.0920718!10413-106B8;0.556098!10175-103C4;0.734069!10161-103A8;0.191649!12131-128D7;0.16481!10624-108H3;0.0596753!10712-109I1;0.874!10205-103F7;0.69024!10206-103F8;0.646125!10207-103F9;0.607866!10050-101G5;0.469221!10051-101G6;0.899755!10016-101C7;0.469366!10046-101G1;0.391358!10778-110G4;0.901767!10633-108I3;0.129387!10818-111B8;0.352308!10819-111B9;0.374882!10820-111C1;0.341683!10484-107A7;0.30803!10808-111A7;0.367231!10169-103B7;0.884574!10153-102I9;0.20987!13425-144D5;0.0524067!13433-144E4;0.0544553!13437-144E8;0.0839262!11904-125F5;0.066749!11905-125F6;0.169135!10039-101F3;0.473813!10791-110H8;0.0679802!10017-101C8;0.707622!10045-101F9;0.812099!10509-107D5;0.258702!10839-111E2;0.0444242!10692-109F8;0.929658!10079-102A7;0.195042!10078-102A6;0.755224!10721-110A1;0.359624!10569-108B2;0.62561!10570-108B3;0.739784!10571-108B4;0.716111!10647-109A8;0.960828!10752-110D5;0.083835!10782-110G8;0.112117!10726-110A6;0.460727!10018-101C9;0.317325!10086-102B5;0.0517298!10182-103D2;0.292424!10165-103B3;0.10286!10499-107C4;0.0866938!10408-106B3;0.486409!10019-101D1;0.94562!10068-101I5;0.601043!10075-102A3;0.900787!10077-102A5;0.308454!10727-110A7;0.0265709!10775-110G1;0.506557!10412-106B7;0.613603!12231-129F8;0.736487!12232-129F9;0.972877!12233-129G1;0.94675!12234-129G2;0.976594!10414-106B9;0.86582!10170-103B8;0.163773!10183-103D3;0.112851!10150-102I6;0.0923597!10174-103C3;0.0438701!10155-103A2;0.100181!10038-101F2;0.0231972!10838-111E1;0.0589131!10759-110E3;0.0244139!10514-107E1;0.169912!10465-106H6;0.674382!10691-109F7;0.999106!10843-111E6;0.679744!10844-111E7;0.380092!11747-123G1;0.0941009!11748-123G2;0.821067!11749-123G3;0.787939!11750-123G4;0.671002!11751-123G5;0.356801!11840-124H4;0.35181!11752-123G6;0.340751!11753-123G7;0.200262!11754-123G8;0.566342!11755-123G9;0.922392!11756-123H1;0.793372!11833-124G6;0.638391!11760-123H5;0.0451698!11836-124G9;0.401942!11758-123H3;0.794812!11835-124G8;0.331019!11762-123H7;0.641875!11838-124H2;0.0433555!11757-123H2;0.30303!11759-123H4;0.971369!11761-123H6;0.136106!11842-124H6;0.574993!11837-124H1;0.374879!10568-108B1;0.537462!13230-141I8;0.22782!13231-141I9;0.556552!10696-109G3;0.403933!10493-107B7;0.166606!10494-107B8;0.89201!10850-111F4;0.860333!10851-111F5;0.249886!10852-111F6;0.592285!10853-111F7;0.087453!10854-111F8;0.462822!10855-111F9;0.231323!10856-111G1;0.0240669!10847-111F1;0.55464!10846-111E9;0.207384!10848-111F2;0.586178!10845-111E8;0.358854!10857-111G2;0.234986!10858-111G3;0.331921!10156-103A3;0.372149!11901-125F2;0.040257!11902-125F3;0.129529!11903-125F4;0.0738569!10689-109F5;0.0452289!10648-109A9;0.960796!10784-110H1;0.097915!10744-110C6;0.382476!10772-110F7;0.0939019!10474-106I6;0.0490204!10600-108E6;0.155095!10684-109E9;0.0789274!12226-129F3;0.118268!12227-129F4;0.562441!10508-107D4;0.446857!10539-107G8;0.38274!10607-108F4;0.0112378!10555-107I6;0.378205!10774-110F9;0.231721!10637-108I7;0.259848!10663-109C6;0.402995!10728-110A8;0.0673061!10729-110A9;0.553669!10430-106D7;0.77051!10730-110B1;0.680034!10813-111B3;0.00583407!10812-111B2;0.107708!10037-101F1;0.784957!10172-103C1;0.0854622!10163-103B1;0.0617241!10076-102A4;0.0401095!10073-102A1;0.0692536!10036-101E9;0.0174338!10195-103E6;0.0492867!10277-104E7;0.0757692!10434-106E2;0.546968!10550-107I1;0.57364!10545-107H5;0.400963!10544-107H4;0.927268!10704-109H2;0.952337!10510-107D6;0.615625!10558-107I9;0.0448598!10020-101D2;0.112703!10732-110B3;0.953836!10049-101G4;0.750498!10698-109G5;0.497889!10437-106E5;0.645519!10417-106C3;0.570932!10035-101E8;0.382918!10171-103B9;0.0572639!10157-103A4;0.0527042!10034-101E7;0.0425659!10072-101I9;0.0661877!10199-103F1;0.0128291!10200-103F2;0.600647!10697-109G4;0.913591!10723-110A3;0.0439338!10179-103C8;0.187607!10160-103A7;0.270519!10180-103C9;0.160239!10162-103A9;0.73202!10021-101D3;0.304599!10840-111E3;0.352839!10706-109H4;0.237411!10033-101E6;0.81432!10032-101E5;0.0385286!10490-107B4;0.0661746!10439-106E7;0.421132!10022-101D4;0.3435!10176-103C5;0.832424!10469-106I1;0.158005!10067-101I4;0.661479!10411-106B6;0.20868!10471-106I3;0.266092!10030-101E3;0.743446!10475-106I7;0.146321!10787-110H4;0.137312!10477-106I9;0.300419!10695-109G2;0.114818!11771-123I7;0.959007!11772-123I8;0.525881!11773-123I9;0.825841!10093-102C3;0.653619!10442-106F1;0.738056!10442-106F1;0.507618!10201-103F3;0.460675!10639-108I9;0.638367!11843-124H7;0.0750463!11841-124H5;0.348922!10693-109F9;0.334076!10436-106E4;0.449927!10483-107A6;0.266995!10282-104F3;0.838836!10023-101D5;0.276891!10066-101I3;0.371597!10065-101I2;0.561575!10800-110I8;0.471101!10610-108F7;0.179833!10841-111E4;0.063985!10541-107H1;0.334263!10842-111E5;0.0587699!10562-108A4;0.0339253!10024-101D6;0.00104046!10064-101I1;0.427053!10609-108F6;0.790501!10048-101G3;0.0319678!10781-110G7;0.652214!10181-103D1;0.364991!10159-103A6;0.171113!10056-101H2;0.215408!10737-110B8;0.0372771!10025-101D7;0.42667!10044-101F8;0.117073!10424-106D1;0.945038!10463-106H4;0.257197!10616-108G4;0.697785!10486-107A9;0.300629!10062-101H8;0.161907!10202-103F4;0.337072!10158-103A5;0.761609!10441-106E9;0.310451!10031-101E4;0.00317304!10063-101H9;0.058255!10063-101H9;0.0206566!11763-123H8;0.551248!11765-123I1;0.867987!11768-123I4;0.9079!10807-111A6;0.871141!10790-110H7;0.055518!10798-110I6;0.0354255!10786-110H3;0.159116!10591-108D6;0.0740392!10593-108D8;0.0215157!10590-108D5;0.0197031!10026-101D8;0.104387!10096-102C6;0.712215!10168-103B6;0.306637!10154-103A1;0.0955215!10209-103G2;0.129434!10061-101H7;0.794759!10027-101D9;0.656474!10043-101F7;0.2659!10783-110G9;0.832196!10028-101E1;0.861249!10060-101H6;0.327847!10203-103F5;0.827798!10059-101H5;0.768386!10047-101G2;0.764419!10029-101E2;0.647285!10058-101H4;0.705937!10418-106C4;0.744363!10492-107B6;0.0364308!10694-109G1;0.442831!10797-110I5;0.0201591!10057-101H3;0.204294!10100-102D1;0.782299!10055-101H1;0.858258!10204-103F6;0.277129!10191-103E2;0.896129!10563-108A5;0.646479
|name=GFI1_f1
|name=GFI1_f1
|tomtom_result=Gfi#MA0038.1;-1;6.84768e-07;0.00032595;0.000651734;9;GCTGTGATTT;CAGTGATTTG;-!onecut#MA0235.1;-3;0.00172134;0.819359;0.630859;7;GCTGTGATTT;TTGATTT;+!HAP4#MA0315.1;3;0.00283776;1.35077;0.630859;10;GCTGTGATTT;TCGCCTCTGATTGGT;-!RUNX1#MA0002.2;1;0.0033992;1.61802;0.630859;10;GCTGTGATTT;GTCTGTGGTTT;+!YPR015C#MA0435.1;1;0.00345113;1.64274;0.630859;10;GCTGTGATTT;TGTAAGGATTTACGTCTTCA;-!NFYA#MA0060.1;0;0.00513224;2.44294;0.630859;10;GCTGTGATTT;GCGCTGATTGGCTGAG;-!HOXA5#MA0158.1;-1;0.00515569;2.45411;0.630859;8;GCTGTGATTT;CACTAATT;+!HAP5#MA0316.1;3;0.00530268;2.52408;0.630859;10;GCTGTGATTT;TGGGATCTGATTGGT;+!SPT23#MA0388.1;-3;0.0086418;4.1135;0.913879;7;GCTGTGATTT;TTGATTTC;-!ABF1#MA0265.1;6;0.010301;4.90328;0.980408;10;GCTGTGATTT;TCGTATAAAGTGATAA;+!YPR013C#MA0434.1;-4;0.018268;8.69558;0.999747;6;GCTGTGATTT;TGATCTACA;-
}}
}}

Latest revision as of 12:27, 7 September 2012

Full Name: GFI1_f1

Motif matrix
POACGT
143.5853229391434210.39498341224920987.864773677518737.691740240861542
211.62637313051259102.3662709924493720.8332045843794114.710971562431595
360.59001518777666515.01059200930717311.31173755080736762.62447552188192
47.77816035822697642.69487298423547484.2091015765034314.854685350807117
535.7705285681463252.538869724772211611.9579422864486499.26947969040584
60.00.0149.536820269772850.0
7149.536820269772850.00.00.0
80.00.00.0149.53682026977285
90.00.00.0149.53682026977285
1015.47740816550331817.65467846868026328.53527465436101587.86945898122855

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Gfi#MA0038.1-16.84768e-070.000325950.0006517349GCTGTGATTTCAGTGATTTG-
onecut#MA0235.1-30.001721340.8193590.6308597GCTGTGATTTTTGATTT+
HAP4#MA0315.130.002837761.350770.63085910GCTGTGATTTTCGCCTCTGATTGGT-
RUNX1#MA0002.210.00339921.618020.63085910GCTGTGATTTGTCTGTGGTTT+
YPR015C#MA0435.110.003451131.642740.63085910GCTGTGATTTTGTAAGGATTTACGTCTTCA-
NFYA#MA0060.100.005132242.442940.63085910GCTGTGATTTGCGCTGATTGGCTGAG-
HOXA5#MA0158.1-10.005155692.454110.6308598GCTGTGATTTCACTAATT+
HAP5#MA0316.130.005302682.524080.63085910GCTGTGATTTTGGGATCTGATTGGT+
SPT23#MA0388.1-30.00864184.11350.9138797GCTGTGATTTTTGATTTC-
ABF1#MA0265.160.0103014.903280.98040810GCTGTGATTTTCGTATAAAGTGATAA+
YPR013C#MA0434.1-40.0182688.695580.9997476GCTGTGATTTTGATCTACA-
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