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MacroAPE 1083:Motif AGGGCN: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;56;0;0;0!02;0;0;56;0!03;0;0;56;0!04;0;0;56;0!05;0;56;0;0!06;0;0;0;56 |macroape_1083_sample_pvalues=11376-118A8;0.342099!11327-117E4;0.8422...")
 
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10H6;0.905301!10828-111C9;0.988883!10788-110H5;0.623256!10792-110H9;0.873839!10765-110E9;0.796206!10829-111D1;0.87419!10830-111D2;0.693415!10831-111D3;0.884064!10832-111D4;0.587643!10833-111D5;0.855772!10764-110E8;0.968943!10770-110F5;0.828454!10399-106A3;0.683639!10400-106A4;0.657399!10405-106A9;0.600526!10834-111D6;0.548517!10835-111D7;0.788262!10836-111D8;0.140089!10837-111D9;0.267694!10699-109G6;0.819711!10802-111A1;0.317733!10796-110I4;0.496851!10010-101C1;0.130665!10810-111A9;0.135777!10421-106C7;0.343028!10708-109H6;0.753077!12235-129G3;0.291484!12236-129G4;0.477!12237-129G5;0.824658!10167-103B5;0.163226!10151-102I7;0.454481!10428-106D5;0.321445!10795-110I3;0.176982!10805-111A4;0.168138!10052-101G7;0.321279!10189-103D9;0.147689!10589-108D4;0.0241462!10425-106D2;0.201496!10427-106D4;0.595785!10702-109G9;0.493827!10432-106D9;0.626199!10496-107C1;0.0305568!10718-109I7;0.0207325!10011-101C2;0.728106!10053-101G8;0.240522!10686-109F2;0.201036!10084-102B3;0.540416!10012-101C3;0.220829!10085-102B4;0.313646!10482-107A5;0.482422!10419-106C5;0.0881971!10080-102A8;0.177129!10760-110E4;0.186324!10709-109H7;0.00385272!10710-109H8;0.0760301!10703-109H1;0.0495452!10719-109I8;0.0565945!10642-109A3;0.075353!10177-103C6;0.0352458!10164-103B2;0.306337!10173-103C2;0.366022!10166-103B4;0.432543!10083-102B2;0.477221!10188-103D8;0.364064!10552-107I3;0.280968!10553-107I4;0.0652715!10013-101C4;0.0771876!10536-107G5;0.226793!10618-108G6;0.343552!10423-106C9;0.457696!10785-110H2;0.350216!12238-129G6;0.17475!12239-129G7;0.838806!12240-129G8;0.886347!10416-106C2;0.589905!10801-110I9;0.629568!10766-110F1;0.706148!10824-111C5;0.558348!10825-111C6;0.307057!10826-111C7;0.293176!10454-106G4;0.309971!10409-106B4;0.330446!10638-108I8;0.424745!10636-108I6;0.0572257!10513-107D9;0.047711!10420-106C6;0.233233!10082-102B1;0.209458!10014-101C5;0.119846!10070-101I7;0.145948!10452-106G2;0.0926519!10453-106G3;0.578585!10449-106F8;0.43314!10042-101F6;0.446818!10069-101I6;0.110402!10193-103E4;0.302641!10631-108I1;0.320194!10438-106E6;0.431483!10488-107B2;0.0152706!10196-103E7;0.0386572!10071-101I8;0.530335!10071-101I8;0.097277!10041-101F5;0.620501!10451-106G1;0.0548514!10450-106F9;0.0606185!10604-108F1;0.1388!10605-108F2;0.0951099!10606-108F3;0.18747!10603-108E9;0.078415!10497-107C2;0.165815!10448-106F7;0.0107791!10643-109A4;0.0907932!10426-106D3;0.0137991!10431-106D8;0.0729061!10197-103E8;0.0466717!10443-106F2;0.224615!10815-111B5;0.703079!10816-111B6;0.209798!10817-111B7;0.25127!10015-101C6;0.204891!10410-106B5;0.253941!10054-101G9;0.101569!10758-110E2;0.243819!10711-109H9;0.215309!10040-101F4;0.227348!10470-106I2;0.422047!10415-106C1;0.0384156!10198-103E9;0.236702!10614-108G2;0.293728!10612-108F9;0.0902695!10549-107H9;0.0280584!10615-108G3;0.0798652!10487-107B1;0.0199555!10433-106E1;0.109099!10688-109F4;0.44134!10444-106F3;0.199518!10444-106F3;0.343662!10485-107A8;0.485667!10413-106B8;0.206105!10175-103C4;0.0668385!10161-103A8;0.307464!12131-128D7;0.181232!10624-108H3;0.754754!10712-109I1;0.329892!10205-103F7;0.745527!10206-103F8;0.175158!10207-103F9;0.394875!10050-101G5;0.206539!10051-101G6;0.70533!10016-101C7;0.364192!10046-101G1;0.230439!10778-110G4;0.201032!10633-108I3;0.653012!10818-111B8;0.484777!10819-111B9;0.202931!10820-111C1;0.191201!10484-107A7;0.214046!10808-111A7;0.00784635!10169-103B7;0.272271!10153-102I9;0.35458!13425-144D5;0.221222!13433-144E4;0.626658!13437-144E8;0.373506!11904-125F5;0.361315!11905-125F6;0.718952!10039-101F3;0.71974!10791-110H8;0.37378!10017-101C8;0.10219!10045-101F9;0.413196!10509-107D5;0.215393!10839-111E2;0.21409!10692-109F8;0.0220036!10079-102A7;0.082852!10078-102A6;0.19912!10721-110A1;0.282286!10569-108B2;0.560053!10570-108B3;0.587261!10571-108B4;0.612186!10647-109A8;0.265918!10752-110D5;0.318742!10782-110G8;0.405013!10726-110A6;0.510107!10018-101C9;0.18624!10086-102B5;0.778166!10182-103D2;0.0984041!10165-103B3;0.196123!10499-107C4;0.272296!10408-106B3;0.0224153!10019-101D1;0.36029!10068-101I5;0.109795!10075-102A3;0.271677!10077-102A5;0.104466!10727-110A7;5.76729e-05!10775-110G1;0.950487!10412-106B7;0.283987!12231-129F8;0.0821137!12232-129F9;0.527591!12233-129G1;0.370208!12234-129G2;0.263269!10414-106B9;0.716358!10170-103B8;0.017703!10183-103D3;0.59222!10150-102I6;0.465712!10174-103C3;0.344143!10155-103A2;0.0789243!10038-101F2;0.122696!10838-111E1;0.140386!10759-110E3;0.358414!10514-107E1;0.139262!10465-106H6;0.18394!10691-109F7;0.734269!10843-111E6;0.0965701!10844-111E7;0.101586!11747-123G1;0.160579!11748-123G2;0.356318!11749-123G3;0.613713!11750-123G4;0.531496!11751-123G5;0.615311!11840-124H4;0.726192!11752-123G6;0.875883!11753-123G7;0.15734!11754-123G8;0.692661!11755-123G9;0.594824!11756-123H1;0.349975!11833-124G6;0.319366!11760-123H5;0.0882713!11836-124G9;0.200891!11758-123H3;0.792302!11835-124G8;0.565029!11762-123H7;0.956538!11838-124H2;0.865736!11757-123H2;0.989804!11759-123H4;0.393057!11761-123H6;0.313159!11842-124H6;0.198099!11837-124H1;0.904757!10568-108B1;0.99906!13230-141I8;0.738542!13231-141I9;0.935169!10696-109G3;0.870319!10493-107B7;0.932292!10494-107B8;0.135927!10850-111F4;0.637135!10851-111F5;0.243964!10852-111F6;0.646999!10853-111F7;0.651583!10854-111F8;0.235859!10855-111F9;0.575503!10856-111G1;0.540689!10847-111F1;0.201587!10846-111E9;0.913779!10848-111F2;0.353064!10845-111E8;0.250912!10857-111G2;0.0917662!10858-111G3;0.392384!10156-103A3;0.064864!11901-125F2;0.372913!11902-125F3;0.795136!11903-125F4;0.890031!10689-109F5;0.812811!10648-109A9;0.0449096!10784-110H1;0.0487962!10744-110C6;0.0270607!10772-110F7;0.522138!10474-106I6;0.823402!10600-108E6;0.360117!10684-109E9;0.319759!12226-129F3;0.0737082!12227-129F4;0.0286015!10508-107D4;0.525613!10539-107G8;0.269481!10607-108F4;0.0898502!10555-107I6;0.0934728!10774-110F9;0.157277!10637-108I7;0.307086!10663-109C6;0.188318!10728-110A8;0.143399!10729-110A9;0.260328!10430-106D7;0.400861!10730-110B1;0.441282!10813-111B3;0.0188937!10812-111B2;0.752564!10037-101F1;0.7806!10172-103C1;0.378945!10163-103B1;0.515159!10076-102A4;0.278187!10073-102A1;0.344002!10036-101E9;0.602968!10195-103E6;0.351444!10277-104E7;0.376671!10434-106E2;0.33279!10550-107I1;0.174208!10545-107H5;0.072103!10544-107H4;0.0442272!10704-109H2;0.0740276!10510-107D6;0.875613!10558-107I9;0.422748!10020-101D2;0.138341!10732-110B3;0.211875!10049-101G4;0.0720547!10698-109G5;0.0772091!10437-106E5;0.392492!10417-106C3;0.616961!10035-101E8;0.088492!10171-103B9;0.40467!10157-103A4;0.488778!10034-101E7;0.346607!10072-101I9;0.412236!10199-103F1;0.606727!10200-103F2;0.739271!10697-109G4;0.293871!10723-110A3;0.168384!10179-103C8;0.00447293!10160-103A7;0.596746!10180-103C9;0.486482!10162-103A9;0.898561!10021-101D3;0.827742!10840-111E3;0.171311!10706-109H4;0.463337!10033-101E6;0.856943!10032-101E5;0.263139!10490-107B4;0.382612!10439-106E7;0.12908!10022-101D4;0.0965238!10176-103C5;0.24922!10469-106I1;0.433085!10067-101I4;0.321691!10411-106B6;0.0999454!10471-106I3;0.0159583!10030-101E3;0.0538141!10475-106I7;0.123545!10787-110H4;0.0803763!10477-106I9;0.456329!10695-109G2;0.724985!11771-123I7;0.675019!11772-123I8;0.0092763!11773-123I9;0.0397805!10093-102C3;0.293592!10442-106F1;0.47876!10442-106F1;0.119319!10201-103F3;0.124209!10639-108I9;0.461347!11843-124H7;0.187757!11841-124H5;0.334106!10693-109F9;0.261577!10436-106E4;0.169291!10483-107A6;0.0223474!10282-104F3;0.138761!10023-101D5;0.731469!10066-101I3;0.399431!10065-101I2;0.245292!10800-110I8;0.302889!10610-108F7;0.133623!10841-111E4;0.415128!10541-107H1;0.282436!10842-111E5;0.11429!10562-108A4;0.113309!10024-101D6;0.0873351!10064-101I1;0.0972908!10609-108F6;0.17975!10048-101G3;0.00360267!10781-110G7;0.359728!10181-103D1;0.0495384!10159-103A6;0.093453!10056-101H2;0.0840447!10737-110B8;0.177166!10025-101D7;0.427768!10044-101F8;0.00282906!10424-106D1;0.0135664!10463-106H4;0.504799!10616-108G4;0.0554072!10486-107A9;0.0225383!10062-101H8;0.0260589!10202-103F4;0.0930998!10158-103A5;0.310663!10441-106E9;0.117379!10031-101E4;0.276885!10063-101H9;0.319987!10063-101H9;0.633996!11763-123H8;0.211048!11765-123I1;0.942269!11768-123I4;0.585894!10807-111A6;0.969452!10790-110H7;0.620793!10798-110I6;0.326829!10786-110H3;0.332697!10591-108D6;0.29565!10593-108D8;0.247407!10590-108D5;0.05449!10026-101D8;0.237129!10096-102C6;0.0924496!10168-103B6;0.502599!10154-103A1;0.24679!10209-103G2;0.208506!10061-101H7;0.281679!10027-101D9;0.371518!10043-101F7;0.15298!10783-110G9;0.0258541!10028-101E1;0.166535!10060-101H6;0.832964!10203-103F5;0.447647!10059-101H5;0.343649!10047-101G2;0.364817!10029-101E2;0.0813163!10058-101H4;0.128297!10418-106C4;0.265761!10492-107B6;0.0968507!10694-109G1;0.221224!10797-110I5;0.98356!10057-101H3;0.015159!10100-102D1;0.305447!10055-101H1;0.245601!10204-103F6;0.160414!10191-103E2;0.314249!10563-108A5;0.0637469
|name=motif_AGGGCN
|name=motif_AGGGCN
|tomtom_result=TBF1#MA0403.1;2;0.000633917;0.301745;0.603489;6;AGGGCT;TTAGGGTT;-!RGM1#MA0366.1;0;0.00700794;3.33578;1;5;AGGGCT;AGGGG;+!RPH1#MA0372.1;2;0.00870902;4.14549;1;6;AGGGCT;TTAGGGGT;-!Kr#MA0452.1;4;0.0158615;7.55006;1;6;AGGGCT;CAAAAGGGTTA;+!MSN4#MA0342.1;0;0.0167443;7.97027;1;5;AGGGCT;AGGGG;+!GIS1#MA0306.1;3;0.0182518;8.68787;1;6;AGGGCT;TTTAGGGGT;-
}}
}}

Latest revision as of 14:59, 7 September 2012

Full Name: motif_AGGGCN

Motif matrix
POACGT
0156000
0200560
0300560
0400560
0505600
0600056

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
TBF1#MA0403.120.0006339170.3017450.6034896AGGGCTTTAGGGTT-
RGM1#MA0366.100.007007943.3357815AGGGCTAGGGG+
RPH1#MA0372.120.008709024.1454916AGGGCTTTAGGGGT-
Kr#MA0452.140.01586157.5500616AGGGCTCAAAAGGGTTA+
MSN4#MA0342.100.01674437.9702715AGGGCTAGGGG+
GIS1#MA0306.130.01825188.6878716AGGGCTTTTAGGGGT-
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