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MacroAPE 1083:TYTYTYTYTYYYYY,motif247: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;90.797;587.401;87.091;1087.711!2;57.443;730.082;81.532;983.943!3;68.561;353.923;66.708;1363.808!4;50.031;763.436;70.414;969.119!5;70.414;537...")
 
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0.792026!10534-107G3;0.852395!10429-106D6;0.579565!10464-106H5;0.921602!10827-111C8;0.538413!10789-110H6;0.786706!10828-111C9;0.342014!10788-110H5;0.612546!10792-110H9;0.739569!10765-110E9;0.804516!10829-111D1;0.411207!10830-111D2;0.901082!10831-111D3;0.955547!10832-111D4;0.762923!10833-111D5;0.933874!10764-110E8;0.941453!10770-110F5;0.191578!10399-106A3;0.908151!10400-106A4;0.513092!10405-106A9;0.516905!10834-111D6;0.403525!10835-111D7;0.636092!10836-111D8;0.721899!10837-111D9;0.128578!10699-109G6;0.210604!10802-111A1;0.398217!10796-110I4;0.175412!10010-101C1;0.480873!10810-111A9;0.0701717!10421-106C7;0.201828!10708-109H6;0.413425!12235-129G3;0.606042!12236-129G4;0.285006!12237-129G5;0.814159!10167-103B5;0.385637!10151-102I7;0.840248!10428-106D5;0.641341!10795-110I3;0.244302!10805-111A4;0.896141!10052-101G7;0.0904848!10189-103D9;0.410658!10589-108D4;0.509084!10425-106D2;0.793102!10427-106D4;0.617935!10702-109G9;0.91465!10432-106D9;0.711667!10496-107C1;0.210895!10718-109I7;0.897726!10011-101C2;0.894396!10053-101G8;0.727445!10686-109F2;0.0667619!10084-102B3;0.203666!10012-101C3;0.951268!10085-102B4;0.832787!10482-107A5;0.529981!10419-106C5;0.618293!10080-102A8;0.325707!10760-110E4;0.418136!10709-109H7;0.0154408!10710-109H8;0.194434!10703-109H1;0.717583!10719-109I8;0.165311!10642-109A3;0.307595!10177-103C6;0.672378!10164-103B2;0.920651!10173-103C2;0.788459!10166-103B4;0.997116!10083-102B2;0.978607!10188-103D8;0.909856!10552-107I3;0.748269!10553-107I4;0.594106!10013-101C4;0.909183!10536-107G5;0.693617!10618-108G6;0.893678!10423-106C9;0.438797!10785-110H2;0.292617!12238-129G6;0.312479!12239-129G7;0.40097!12240-129G8;0.9869!10416-106C2;0.313517!10801-110I9;0.413892!10766-110F1;0.696799!10824-111C5;0.282017!10825-111C6;0.62319!10826-111C7;0.590949!10454-106G4;0.618032!10409-106B4;0.48243!10638-108I8;0.186663!10636-108I6;0.371548!10513-107D9;0.473296!10420-106C6;0.468926!10082-102B1;0.296968!10014-101C5;0.927248!10070-101I7;0.928716!10452-106G2;0.740479!10453-106G3;0.600624!10449-106F8;0.193454!10042-101F6;0.168495!10069-101I6;0.714831!10193-103E4;0.886451!10631-108I1;0.44488!10438-106E6;0.435208!10488-107B2;0.712919!10196-103E7;0.205225!10071-101I8;0.382077!10071-101I8;0.9432!10041-101F5;0.502459!10451-106G1;0.757747!10450-106F9;0.616248!10604-108F1;0.855866!10605-108F2;0.876877!10606-108F3;0.417378!10603-108E9;0.754411!10497-107C2;0.627218!10448-106F7;0.178369!10643-109A4;0.0171151!10426-106D3;0.881539!10431-106D8;0.914427!10197-103E8;0.963558!10443-106F2;0.952929!10815-111B5;0.70546!10816-111B6;0.85517!10817-111B7;0.652173!10015-101C6;0.960876!10410-106B5;0.660017!10054-101G9;0.717162!10758-110E2;0.253889!10711-109H9;0.376502!10040-101F4;0.372127!10470-106I2;0.71585!10415-106C1;0.32206!10198-103E9;0.884387!10614-108G2;0.369556!10612-108F9;0.893953!10549-107H9;0.867609!10615-108G3;0.153172!10487-107B1;0.0501903!10433-106E1;0.215846!10688-109F4;0.715159!10444-106F3;0.982573!10444-106F3;0.35674!10485-107A8;0.470141!10413-106B8;0.593032!10175-103C4;0.758534!10161-103A8;0.575414!12131-128D7;0.642957!10624-108H3;0.00070507!10712-109I1;0.0952837!10205-103F7;0.430042!10206-103F8;0.26199!10207-103F9;0.232762!10050-101G5;0.0476891!10051-101G6;0.968753!10016-101C7;0.698407!10046-101G1;0.105885!10778-110G4;0.208049!10633-108I3;0.964438!10818-111B8;0.967357!10819-111B9;0.473802!10820-111C1;0.531193!10484-107A7;0.500621!10808-111A7;0.319391!10169-103B7;0.705655!10153-102I9;0.925489!13425-144D5;0.648105!13433-144E4;0.185134!13437-144E8;0.243199!11904-125F5;0.129264!11905-125F6;0.0646065!10039-101F3;0.0299859!10791-110H8;0.735152!10017-101C8;0.3554!10045-101F9;0.0299982!10509-107D5;0.304013!10839-111E2;0.915809!10692-109F8;0.271152!10079-102A7;0.808447!10078-102A6;0.628124!10721-110A1;0.222912!10569-108B2;0.0745708!10570-108B3;0.107289!10571-108B4;0.0188153!10647-109A8;0.152479!10752-110D5;0.541201!10782-110G8;0.297619!10726-110A6;0.133755!10018-101C9;0.879162!10086-102B5;0.268251!10182-103D2;0.495418!10165-103B3;0.920288!10499-107C4;0.710055!10408-106B3;0.670912!10019-101D1;0.933954!10068-101I5;0.308701!10075-102A3;0.101311!10077-102A5;0.511926!10727-110A7;0.393676!10775-110G1;0.630564!10412-106B7;0.84668!12231-129F8;0.224558!12232-129F9;0.312724!12233-129G1;0.137285!12234-129G2;0.238471!10414-106B9;0.282089!10170-103B8;0.801069!10183-103D3;0.935112!10150-102I6;0.756748!10174-103C3;0.763315!10155-103A2;0.736777!10038-101F2;0.821743!10838-111E1;0.865457!10759-110E3;0.380066!10514-107E1;0.18689!10465-106H6;0.180582!10691-109F7;0.746222!10843-111E6;0.695209!10844-111E7;0.148565!11747-123G1;0.100585!11748-123G2;0.104465!11749-123G3;0.564872!11750-123G4;0.121943!11751-123G5;0.408115!11840-124H4;0.249134!11752-123G6;0.200001!11753-123G7;0.237853!11754-123G8;0.404543!11755-123G9;0.0680254!11756-123H1;0.0904444!11833-124G6;0.284414!11760-123H5;0.12936!11836-124G9;0.139749!11758-123H3;0.0269616!11835-124G8;0.00787142!11762-123H7;0.152081!11838-124H2;0.00668472!11757-123H2;0.0187448!11759-123H4;0.0156204!11761-123H6;0.542282!11842-124H6;0.0819492!11837-124H1;0.295545!10568-108B1;0.224167!13230-141I8;0.854278!13231-141I9;0.24113!10696-109G3;0.250863!10493-107B7;0.272288!10494-107B8;0.800929!10850-111F4;0.288176!10851-111F5;0.334569!10852-111F6;0.177736!10853-111F7;0.649909!10854-111F8;0.652871!10855-111F9;0.790452!10856-111G1;0.0159066!10847-111F1;0.210793!10846-111E9;0.95798!10848-111F2;0.962149!10845-111E8;0.703326!10857-111G2;0.715459!10858-111G3;0.754692!10156-103A3;0.544317!11901-125F2;0.646999!11902-125F3;0.081346!11903-125F4;0.00812212!10689-109F5;0.0878946!10648-109A9;0.528594!10784-110H1;0.860639!10744-110C6;0.642454!10772-110F7;0.927145!10474-106I6;0.330848!10600-108E6;0.795818!10684-109E9;0.723067!12226-129F3;0.568877!12227-129F4;0.119553!10508-107D4;0.524209!10539-107G8;0.294766!10607-108F4;0.243734!10555-107I6;0.147141!10774-110F9;0.246232!10637-108I7;0.00174977!10663-109C6;0.212155!10728-110A8;0.0675532!10729-110A9;0.0381079!10430-106D7;0.751625!10730-110B1;0.590554!10813-111B3;0.202954!10812-111B2;0.702874!10037-101F1;0.394125!10172-103C1;0.89711!10163-103B1;0.641533!10076-102A4;0.608593!10073-102A1;0.558147!10036-101E9;0.396694!10195-103E6;0.801934!10277-104E7;0.830705!10434-106E2;0.301071!10550-107I1;0.373788!10545-107H5;0.265233!10544-107H4;0.371272!10704-109H2;0.965533!10510-107D6;0.860528!10558-107I9;0.495109!10020-101D2;0.281925!10732-110B3;0.845398!10049-101G4;0.137026!10698-109G5;0.879087!10437-106E5;0.296105!10417-106C3;0.799959!10035-101E8;0.530423!10171-103B9;0.726978!10157-103A4;0.803198!10034-101E7;0.691827!10072-101I9;0.872586!10199-103F1;0.330912!10200-103F2;0.839966!10697-109G4;0.880455!10723-110A3;0.618628!10179-103C8;0.318268!10160-103A7;0.788672!10180-103C9;0.689151!10162-103A9;0.196221!10021-101D3;0.668467!10840-111E3;0.0616952!10706-109H4;0.969747!10033-101E6;0.347858!10032-101E5;0.715221!10490-107B4;0.914645!10439-106E7;0.601463!10022-101D4;0.725557!10176-103C5;0.574423!10469-106I1;0.725789!10067-101I4;0.635338!10411-106B6;0.684109!10471-106I3;0.833234!10030-101E3;0.72261!10475-106I7;0.593851!10787-110H4;0.07305!10477-106I9;0.747476!10695-109G2;0.781854!11771-123I7;0.910818!11772-123I8;0.399207!11773-123I9;0.708875!10093-102C3;0.272383!10442-106F1;0.743666!10442-106F1;0.169535!10201-103F3;0.301887!10639-108I9;0.89365!11843-124H7;0.377334!11841-124H5;0.969252!10693-109F9;0.789155!10436-106E4;0.441496!10483-107A6;0.550679!10282-104F3;0.883756!10023-101D5;0.704965!10066-101I3;0.231471!10065-101I2;0.389053!10800-110I8;0.933778!10610-108F7;0.873169!10841-111E4;0.949539!10541-107H1;0.692214!10842-111E5;0.989724!10562-108A4;0.0633309!10024-101D6;0.77197!10064-101I1;0.722867!10609-108F6;0.270726!10048-101G3;0.735729!10781-110G7;0.558418!10181-103D1;0.87126!10159-103A6;0.929843!10056-101H2;0.712332!10737-110B8;0.350851!10025-101D7;0.883659!10044-101F8;0.0616508!10424-106D1;0.140865!10463-106H4;0.303457!10616-108G4;0.919719!10486-107A9;0.580027!10062-101H8;0.692122!10202-103F4;0.0245843!10158-103A5;0.883577!10441-106E9;0.613994!10031-101E4;0.337279!10063-101H9;0.863375!10063-101H9;0.487223!11763-123H8;0.325975!11765-123I1;0.140444!11768-123I4;0.293149!10807-111A6;0.559192!10790-110H7;0.524428!10798-110I6;0.0963657!10786-110H3;0.112775!10591-108D6;0.808257!10593-108D8;0.676948!10590-108D5;0.325413!10026-101D8;0.16336!10096-102C6;0.514098!10168-103B6;0.176262!10154-103A1;0.410568!10209-103G2;0.596039!10061-101H7;0.78307!10027-101D9;0.845912!10043-101F7;0.595463!10783-110G9;0.323413!10028-101E1;0.870291!10060-101H6;0.291179!10203-103F5;0.532354!10059-101H5;0.784368!10047-101G2;0.623052!10029-101E2;0.799828!10058-101H4;0.530315!10418-106C4;0.70509!10492-107B6;0.731695!10694-109G1;0.776984!10797-110I5;0.801902!10057-101H3;0.392313!10100-102D1;0.660276!10055-101H1;0.354892!10204-103F6;0.615902!10191-103E2;0.0492713!10563-108A5;0.610884
|name=TYTYTYTYTYYYYY,motif247,CNhs12610,T:1853.0(44.70%),B:23793.4(34.87%),P:1e-38
|name=TYTYTYTYTYYYYY,motif247,CNhs12610,T:1853.0(44.70%),B:23793.4(34.87%),P:1e-38
|tomtom_result=HMG-I/Y#MA0045.1;1;4.4017e-05;0.0209521;0.0218189;14;TTTTTTTTTCTCTC;GTTTTTCCATTTGTTG;-!Klf4#MA0039.1;1;4.60441e-05;0.021917;0.0218189;9;TTTTTTTTTCTCTC;CCTTCCTTTA;-!id1#MA0120.1;0;0.000270884;0.128941;0.0684359;12;TTTTTTTTTCTCTC;TTTTCCTTTTCG;+!AZF1#MA0277.1;0;0.000288839;0.137487;0.0684359;9;TTTTTTTTTCTCTC;TTTCTTTTT;-!Trl#MA0205.1;0;0.00138137;0.65753;0.223875;10;TTTTTTTTTCTCTC;TTGCTCTCTC;+!SFP1#MA0378.1;10;0.00141732;0.674645;0.223875;11;TTTTTTTTTCTCTC;CCGTAGAAAATTTTTTTCAAT;-!SFL1#MA0377.1;5;0.00359562;1.71152;0.450027;14;TTTTTTTTTCTCTC;TTTTATTTCTTCTATTCTCTA;-!Pax4#MA0068.1;15;0.00379874;1.8082;0.450027;14;TTTTTTTTTCTCTC;GAAAAATTTCCCATACTCCACTCCCCCCCC;+!STAT1#MA0137.1;3;0.00516187;2.45705;0.489211;11;TTTTTTTTTCTCTC;CAGTTTCATTTTCC;-!hb#MA0049.1;0;0.00581937;2.77002;0.501386;10;TTTTTTTTTCTCTC;TTTTTTATGC;-!STB3#MA0390.1;8;0.02081;9.90556;0.995524;13;TTTTTTTTTCTCTC;GTCCAAAATTTTTCACTCTGG;+
}}
}}

Latest revision as of 13:56, 7 September 2012

Full Name: TYTYTYTYTYYYYY,motif247,CNhs12610,T:1853.0(44.70%),B:23793.4(34.87%),P:1e-38

Motif matrix
POACGT
190.797587.40187.0911087.711
257.443730.08281.532983.943
368.561353.92366.7081363.808
450.031763.43670.414969.119
570.414537.3761.1491184.067
668.561750.46561.149972.825
761.149700.43444.4721046.945
859.296793.08472.267928.353
964.855655.96263.0021069.181
1059.296889.4461.149843.115
1166.708754.17161.149970.972
1264.855945.0361.149781.966
1366.708822.73264.855898.705
1477.826898.70570.414804.202

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
HMG-I/Y#MA0045.114.4017e-050.02095210.021818914TTTTTTTTTCTCTCGTTTTTCCATTTGTTG-
Klf4#MA0039.114.60441e-050.0219170.02181899TTTTTTTTTCTCTCCCTTCCTTTA-
id1#MA0120.100.0002708840.1289410.068435912TTTTTTTTTCTCTCTTTTCCTTTTCG+
AZF1#MA0277.100.0002888390.1374870.06843599TTTTTTTTTCTCTCTTTCTTTTT-
Trl#MA0205.100.001381370.657530.22387510TTTTTTTTTCTCTCTTGCTCTCTC+
SFP1#MA0378.1100.001417320.6746450.22387511TTTTTTTTTCTCTCCCGTAGAAAATTTTTTTCAAT-
SFL1#MA0377.150.003595621.711520.45002714TTTTTTTTTCTCTCTTTTATTTCTTCTATTCTCTA-
Pax4#MA0068.1150.003798741.80820.45002714TTTTTTTTTCTCTCGAAAAATTTCCCATACTCCACTCCCCCCCC+
STAT1#MA0137.130.005161872.457050.48921111TTTTTTTTTCTCTCCAGTTTCATTTTCC-
hb#MA0049.100.005819372.770020.50138610TTTTTTTTTCTCTCTTTTTTATGC-
STB3#MA0390.180.020819.905560.99552413TTTTTTTTTCTCTCGTCCAAAATTTTTCACTCTGG+
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