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MacroAPE 1083:E2F4 do: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;693.8871033459565;378.9928999867321;437.9450093042275;564.1749873630849!2;647.3986605497932;291.38051390692783;503.9150517512416;632.3057737...")
 
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101D1;0.000808713!10068-101I5;0.00341124!10075-102A3;0.0433201!10077-102A5;7.91237e-05!10727-110A7;0.00162829!10775-110G1;0.0133723!10412-106B7;4.51131e-05!12231-129F8;1.2587e-05!12232-129F9;1.70337e-06!12233-129G1;2.66113e-09!12234-129G2;2.31458e-10!10414-106B9;1.07803e-06!10170-103B8;0.0130566!10183-103D3;0.000305751!10150-102I6;0.000178345!10174-103C3;0.000858492!10155-103A2;7.96018e-06!10038-101F2;0.000237786!10838-111E1;0.000103384!10759-110E3;6.86616e-05!10514-107E1;2.07359e-08!10465-106H6;0.000120525!10691-109F7;0.205487!10843-111E6;0.70511!10844-111E7;2.97522e-05!11747-123G1;0.000539535!11748-123G2;0.347964!11749-123G3;0.272954!11750-123G4;0.836505!11751-123G5;0.0295997!11840-124H4;0.000747687!11752-123G6;0.000419796!11753-123G7;5.32228e-07!11754-123G8;0.00944105!11755-123G9;0.220173!11756-123H1;0.00518527!11833-124G6;0.349018!11760-123H5;4.09699e-06!11836-124G9;0.635624!11758-123H3;0.435501!11835-124G8;0.00869569!11762-123H7;0.000615909!11838-124H2;6.52317e-05!11757-123H2;4.44349e-07!11759-123H4;0.027461!11761-123H6;0.150132!11842-124H6;0.00626724!11837-124H1;0.101348!10568-108B1;0.00107606!13230-141I8;1.66839e-11!13231-141I9;0.135047!10696-109G3;0.121971!10493-107B7;0.85771!10494-107B8;0.0517064!10850-111F4;0.0180097!10851-111F5;0.000180835!10852-111F6;4.13379e-08!10853-111F7;0.135042!10854-111F8;0.000154724!10855-111F9;0.000216352!10856-111G1;0.10244!10847-111F1;0.0408352!10846-111E9;5.72536e-10!10848-111F2;6.62621e-06!10845-111E8;4.73085e-09!10857-111G2;5.64315e-08!10858-111G3;5.09584e-05!10156-103A3;6.19166e-05!11901-125F2;0.00105676!11902-125F3;0.544248!11903-125F4;0.636796!10689-109F5;0.531255!10648-109A9;7.88872e-06!10784-110H1;3.73686e-05!10744-110C6;6.21411e-08!10772-110F7;0.000188048!10474-106I6;2.80078e-06!10600-108E6;0.464538!10684-109E9;4.48911e-09!12226-129F3;4.79853e-11!12227-129F4;0.21532!10508-107D4;0.0249981!10539-107G8;0.130749!10607-108F4;0.000954337!10555-107I6;0.000940106!10774-110F9;0.00117233!10637-108I7;0.000392524!10663-109C6;0.00334756!10728-110A8;5.41755e-05!10729-110A9;0.000805801!10430-106D7;0.139164!10730-110B1;2.35263e-07!10813-111B3;0.0488671!10812-111B2;0.880215!10037-101F1;0.138451!10172-103C1;0.000318656!10163-103B1;0.000637452!10076-102A4;0.00121661!10073-102A1;8.24335e-05!10036-101E9;0.120121!10195-103E6;0.000228147!10277-104E7;0.000339315!10434-106E2;5.33448e-06!10550-107I1;8.77545e-05!10545-107H5;0.000452252!10544-107H4;7.38647e-05!10704-109H2;1.75695e-09!10510-107D6;0.391303!10558-107I9;0.00240014!10020-101D2;0.00270336!10732-110B3;0.000104113!10049-101G4;0.000590846!10698-109G5;2.65048e-12!10437-106E5;3.06592e-05!10417-106C3;3.01226e-11!10035-101E8;0.00014709!10171-103B9;0.000294371!10157-103A4;0.000163781!10034-101E7;0.000798001!10072-101I9;0.000188611!10199-103F1;0.432135!10200-103F2;1.33261e-06!10697-109G4;4.02733e-05!10723-110A3;0.153086!10179-103C8;0.0341282!10160-103A7;1.10901e-05!10180-103C9;0.000176981!10162-103A9;3.52149e-06!10021-101D3;0.000127429!10840-111E3;0.0391394!10706-109H4;9.77509e-05!10033-101E6;8.48304e-05!10032-101E5;9.08675e-05!10490-107B4;0.000167188!10439-106E7;1.02343e-06!10022-101D4;6.30375e-12!10176-103C5;0.000136932!10469-106I1;0.000349825!10067-101I4;0.0798566!10411-106B6;0.289638!10471-106I3;2.06729e-05!10030-101E3;0.106084!10475-106I7;0.000301761!10787-110H4;0.000177546!10477-106I9;5.01211e-05!10695-109G2;4.25936e-07!11771-123I7;0.0488124!11772-123I8;0.516601!11773-123I9;0.541364!10093-102C3;0.0230437!10442-106F1;7.25048e-08!10442-106F1;0.00116444!10201-103F3;0.000148301!10639-108I9;2.50608e-07!11843-124H7;0.00196126!11841-124H5;0.824886!10693-109F9;1.00385e-09!10436-106E4;0.506976!10483-107A6;1.11233e-09!10282-104F3;6.56549e-07!10023-101D5;2.33402e-12!10066-101I3;1.00229e-09!10065-101I2;0.00124584!10800-110I8;0.137791!10610-108F7;4.9996e-05!10841-111E4;0.0150012!10541-107H1;0.00125034!10842-111E5;8.84329e-06!10562-108A4;0.00596874!10024-101D6;2.53957e-06!10064-101I1;2.81916e-05!10609-108F6;0.0976846!10048-101G3;0.0109458!10781-110G7;1.28707e-05!10181-103D1;0.870966!10159-103A6;2.80684e-05!10056-101H2;0.000324924!10737-110B8;0.010394!10025-101D7;0.121335!10044-101F8;0.0428578!10424-106D1;0.268556!10463-106H4;0.000100035!10616-108G4;0.00502414!10486-107A9;0.0474!10062-101H8;0.0455616!10202-103F4;0.0139696!10158-103A5;4.24087e-07!10441-106E9;8.99599e-06!10031-101E4;5.56632e-05!10063-101H9;0.000198706!10063-101H9;0.208715!11763-123H8;0.00811552!11765-123I1;0.964371!11768-123I4;0.00630273!10807-111A6;0.0637461!10790-110H7;0.000860389!10798-110I6;0.00114829!10786-110H3;2.80095e-06!10591-108D6;0.00325446!10593-108D8;0.00101764!10590-108D5;0.195532!10026-101D8;0.000675742!10096-102C6;0.00418938!10168-103B6;0.649302!10154-103A1;5.60817e-05!10209-103G2;0.000318834!10061-101H7;0.004028!10027-101D9;0.0799277!10043-101F7;8.09776e-05!10783-110G9;0.015565!10028-101E1;2.08101e-25!10060-101H6;2.2546e-10!10203-103F5;0.000139482!10059-101H5;0.00877444!10047-101G2;0.00339217!10029-101E2;0.492609!10058-101H4;0.000943347!10418-106C4;0.0214376!10492-107B6;2.88637e-21!10694-109G1;4.03688e-15!10797-110I5;0.882992!10057-101H3;0.667252!10100-102D1;0.00859076!10055-101H1;0.000824803!10204-103F6;0.536778!10191-103E2;0.000239094!10563-108A5;0.00846333
|name=E2F4_do
|name=E2F4_do
|tomtom_result=UGA3#MA0410.1;-3;6.19413e-05;0.0294841;0.0537294;8;AATTGGCGGGAAAA;CGGCGGGA;+!E2F1#MA0024.1;-5;0.000113658;0.0541014;0.0537294;8;AATTGGCGGGAAAA;GCGCCAAA;-!STAT1#MA0137.2;0;0.000734134;0.349448;0.231363;14;AATTGGCGGGAAAA;GGTTTCCGGGAAATG;-!SWI4#MA0401.1;-5;0.00134948;0.642351;0.318967;8;AATTGGCGGGAAAA;ACGCGAAA;+!CHA4#MA0283.1;-4;0.00205389;0.977653;0.34612;8;AATTGGCGGGAAAA;GGCGGAGA;+!ARO80#MA0273.1;3;0.0025608;1.21894;0.34612;14;AATTGGCGGGAAAA;GATAATTCTCGGCAAGTATGT;+!ELK1#MA0028.1;-3;0.00256262;1.21981;0.34612;10;AATTGGCGGGAAAA;GAGCCGGAAG;+!ZMS1#MA0441.1;-4;0.00361579;1.72112;0.422892;9;AATTGGCGGGAAAA;TGCGGGGAA;-!hkb#MA0450.1;-2;0.00415601;1.97826;0.422892;9;AATTGGCGGGAAAA;GGGGCGTGA;+!SUT1#MA0399.1;-4;0.0044729;2.1291;0.422892;7;AATTGGCGGGAAAA;CGCGGGG;+!UME6#MA0412.1;-2;0.00586135;2.79;0.482123;12;AATTGGCGGGAAAA;TCGGCGGCTAATT;+!RSC3#MA0374.1;-3;0.00640429;3.04844;0.482123;7;AATTGGCGGGAAAA;CCGCGCG;-!SP1#MA0079.1;-2;0.00662919;3.15549;0.482123;10;AATTGGCGGGAAAA;GGGGCGGGGT;+!PUT3#MA0358.1;-4;0.00717612;3.41584;0.484621;8;AATTGGCGGGAAAA;CCCGGGAA;+!NHP10#MA0344.1;-4;0.00859856;4.09292;0.508097;8;AATTGGCGGGAAAA;GCCGGGGA;+!TEA1#MA0405.1;-5;0.0107487;5.11637;0.580165;8;AATTGGCGGGAAAA;GCGGACAT;+!YGR067C#MA0425.1;2;0.0110454;5.25763;0.580165;12;AATTGGCGGGAAAA;TGAAAAAGTGGGGT;-!YDR026C#MA0421.1;-4;0.0119349;5.681;0.593888;10;AATTGGCGGGAAAA;GCCGGGTAAA;-!MIG2#MA0338.1;-4;0.0126372;6.01532;0.597396;7;AATTGGCGGGAAAA;TGCGGGG;-!btd#MA0443.1;0;0.0140315;6.67898;0.63172;10;AATTGGCGGGAAAA;AGGGGGCGGA;+!YPR196W#MA0437.1;-6;0.0151921;7.23146;0.652886;8;AATTGGCGGGAAAA;CGGAGAAAT;-!Eip74EF#MA0026.1;-6;0.0173371;8.25244;0.655656;7;AATTGGCGGGAAAA;CCGGAAG;+!MIG3#MA0339.1;-4;0.0173371;8.25244;0.655656;7;AATTGGCGGGAAAA;TGCGGGG;-!Stat3#MA0144.1;-3;0.0185117;8.81156;0.662819;10;AATTGGCGGGAAAA;TTCCAGGAAG;+!MZF1_5-13#MA0057.1;-2;0.0200093;9.52441;0.675637;10;AATTGGCGGGAAAA;GGAGGGGGAA;+
}}
}}

Latest revision as of 13:41, 7 September 2012

Full Name: E2F4_do

Motif matrix
POACGT
1693.8871033459565378.9928999867321437.9450093042275564.1749873630849
2647.3986605497932291.38051390692783503.9150517512416632.3057737920386
3594.6184895725568195.9553706086954431.8398622970795852.5862775216706
4354.575727755759146.3649281059588600.1500946461055973.9092494921781
5105.06736973323635390.215454883150131560.942306994869318.774868388745606
679.4074923006712728.269558105271351938.229069571802329.093880022254645
783.356743666582161922.589434655949210.46795161623669858.585870061234175
827.94732317408696821.88481016645531893.0824569457516132.0854097137082
916.080834487332023702.69540094563851346.43025815560159.793506411432187
1049.14082700561766160.549873422190561839.253218520493926.056081051698452
111900.974344013743851.7754023759386791.703021375309830.5472322350079
121734.931995883396721.353684567671742295.2618834963949423.45243605253615
131314.9613446249211141.3871807414105376.8763067240445241.77516790962383
14643.8258902465811407.6448267007778543.1755163561326480.3537666965092

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
UGA3#MA0410.1-36.19413e-050.02948410.05372948AATTGGCGGGAAAACGGCGGGA+
E2F1#MA0024.1-50.0001136580.05410140.05372948AATTGGCGGGAAAAGCGCCAAA-
STAT1#MA0137.200.0007341340.3494480.23136314AATTGGCGGGAAAAGGTTTCCGGGAAATG-
SWI4#MA0401.1-50.001349480.6423510.3189678AATTGGCGGGAAAAACGCGAAA+
CHA4#MA0283.1-40.002053890.9776530.346128AATTGGCGGGAAAAGGCGGAGA+
ARO80#MA0273.130.00256081.218940.3461214AATTGGCGGGAAAAGATAATTCTCGGCAAGTATGT+
ELK1#MA0028.1-30.002562621.219810.3461210AATTGGCGGGAAAAGAGCCGGAAG+
ZMS1#MA0441.1-40.003615791.721120.4228929AATTGGCGGGAAAATGCGGGGAA-
hkb#MA0450.1-20.004156011.978260.4228929AATTGGCGGGAAAAGGGGCGTGA+
SUT1#MA0399.1-40.00447292.12910.4228927AATTGGCGGGAAAACGCGGGG+
UME6#MA0412.1-20.005861352.790.48212312AATTGGCGGGAAAATCGGCGGCTAATT+
RSC3#MA0374.1-30.006404293.048440.4821237AATTGGCGGGAAAACCGCGCG-
SP1#MA0079.1-20.006629193.155490.48212310AATTGGCGGGAAAAGGGGCGGGGT+
PUT3#MA0358.1-40.007176123.415840.4846218AATTGGCGGGAAAACCCGGGAA+
NHP10#MA0344.1-40.008598564.092920.5080978AATTGGCGGGAAAAGCCGGGGA+
TEA1#MA0405.1-50.01074875.116370.5801658AATTGGCGGGAAAAGCGGACAT+
YGR067C#MA0425.120.01104545.257630.58016512AATTGGCGGGAAAATGAAAAAGTGGGGT-
YDR026C#MA0421.1-40.01193495.6810.59388810AATTGGCGGGAAAAGCCGGGTAAA-
MIG2#MA0338.1-40.01263726.015320.5973967AATTGGCGGGAAAATGCGGGG-
btd#MA0443.100.01403156.678980.6317210AATTGGCGGGAAAAAGGGGGCGGA+
YPR196W#MA0437.1-60.01519217.231460.6528868AATTGGCGGGAAAACGGAGAAAT-
Eip74EF#MA0026.1-60.01733718.252440.6556567AATTGGCGGGAAAACCGGAAG+
MIG3#MA0339.1-40.01733718.252440.6556567AATTGGCGGGAAAATGCGGGG-
Stat3#MA0144.1-30.01851178.811560.66281910AATTGGCGGGAAAATTCCAGGAAG+
MZF1_5-13#MA0057.1-20.02000939.524410.67563710AATTGGCGGGAAAAGGAGGGGGAA+
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