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MacroAPE 1083:CNhs10636 bu f0: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;113.22550970946796;1777.441116211357;373.327768824788;941.178671236652!2;129.46334949415015;2458.778910835232;80.33166115510599;536.59914449...")
 
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2!10809-111A8;0.339852!10597-108E3;0.095846!10717-109I6;0.196469!10455-106G5;0.000262293!10534-107G3;0.097775!10429-106D6;0.0371059!10464-106H5;0.0361991!10827-111C8;0.000443491!10789-110H6;0.0829532!10828-111C9;0.0197677!10788-110H5;0.0736473!10792-110H9;0.0122209!10765-110E9;0.183283!10829-111D1;0.243649!10830-111D2;0.299968!10831-111D3;0.0973474!10832-111D4;0.00122504!10833-111D5;0.138376!10764-110E8;0.131655!10770-110F5;0.0400964!10399-106A3;0.164834!10400-106A4;0.264694!10405-106A9;0.220549!10834-111D6;0.167884!10835-111D7;0.356898!10836-111D8;0.00766871!10837-111D9;0.0257682!10699-109G6;0.0210269!10802-111A1;0.0115587!10796-110I4;0.0246191!10010-101C1;0.00669778!10810-111A9;0.00533047!10421-106C7;6.34983e-05!10708-109H6;0.161044!12235-129G3;0.0168298!12236-129G4;0.378052!12237-129G5;0.935074!10167-103B5;0.368251!10151-102I7;0.261991!10428-106D5;0.120777!10795-110I3;0.0467796!10805-111A4;0.101061!10052-101G7;0.000343859!10189-103D9;0.00291088!10589-108D4;0.00359794!10425-106D2;0.0131793!10427-106D4;0.00134465!10702-109G9;0.0251101!10432-106D9;0.212686!10496-107C1;0.0086979!10718-109I7;0.309119!10011-101C2;0.457727!10053-101G8;0.00110822!10686-109F2;0.169574!10084-102B3;0.813517!10012-101C3;0.056611!10085-102B4;0.050747!10482-107A5;0.779475!10419-106C5;0.00226005!10080-102A8;0.0026047!10760-110E4;0.0973643!10709-109H7;0.0405016!10710-109H8;0.0285299!10703-109H1;0.00836353!10719-109I8;0.0104666!10642-109A3;0.000109892!10177-103C6;0.0160968!10164-103B2;0.152983!10173-103C2;0.111317!10166-103B4;0.720814!10083-102B2;0.533482!10188-103D8;0.273001!10552-107I3;0.0486237!10553-107I4;0.00174039!10013-101C4;0.00158657!10536-107G5;0.00555993!10618-108G6;0.118191!10423-106C9;0.000369731!10785-110H2;0.00463055!12238-129G6;0.00278095!12239-129G7;0.218688!12240-129G8;0.0848731!10416-106C2;0.0473889!10801-110I9;0.0451325!10766-110F1;0.376407!10824-111C5;0.296797!10825-111C6;0.0012771!10826-111C7;0.00124913!10454-106G4;0.00127048!10409-106B4;0.000896523!10638-108I8;0.0566811!10636-108I6;3.92466e-08!10513-107D9;0.000802598!10420-106C6;1.52265e-05!10082-102B1;0.00752604!10014-101C5;0.0175624!10070-101I7;0.0080442!10452-106G2;0.00796809!10453-106G3;0.00296775!10449-106F8;0.00802867!10042-101F6;0.007234!10069-101I6;0.0569773!10193-103E4;0.00331504!10631-108I1;0.0769732!10438-106E6;0.065795!10488-107B2;0.0174573!10196-103E7;0.0405062!10071-101I8;0.172055!10071-101I8;0.0165198!10041-101F5;0.771022!10451-106G1;0.00184482!10450-106F9;0.00240912!10604-108F1;0.000451674!10605-108F2;0.145334!10606-108F3;0.165202!10603-108E9;0.169597!10497-107C2;0.163426!10448-106F7;0.178451!10643-109A4;0.000862279!10426-106D3;0.00627648!10431-106D8;0.0227914!10197-103E8;0.000229466!10443-106F2;0.00391933!10815-111B5;0.0895915!10816-111B6;0.00895434!10817-111B7;0.00178764!10015-101C6;0.00580063!10410-106B5;0.00448802!10054-101G9;0.0864204!10758-110E2;0.000854082!10711-109H9;0.0839992!10040-101F4;0.0169809!10470-106I2;0.178479!10415-106C1;0.00516883!10198-103E9;0.0306995!10614-108G2;0.00193198!10612-108F9;0.208525!10549-107H9;0.0041117!10615-108G3;0.00222288!10487-107B1;0.0585137!10433-106E1;0.0477767!10688-109F4;0.0512118!10444-106F3;0.037739!10444-106F3;0.473784!10485-107A8;0.591505!10413-106B8;0.0754496!10175-103C4;0.00566583!10161-103A8;0.100246!12131-128D7;0.121225!10624-108H3;0.00686257!10712-109I1;0.143752!10205-103F7;0.0535376!10206-103F8;0.000873498!10207-103F9;0.00758111!10050-101G5;0.0156734!10051-101G6;0.103672!10016-101C7;0.00904252!10046-101G1;0.000946876!10778-110G4;0.0277028!10633-108I3;0.404678!10818-111B8;0.00373265!10819-111B9;0.010356!10820-111C1;0.00774249!10484-107A7;0.0120109!10808-111A7;0.000462029!10169-103B7;0.118123!10153-102I9;0.101881!13425-144D5;0.103028!13433-144E4;0.000390703!13437-144E8;3.72922e-05!11904-125F5;2.94226e-05!11905-125F6;0.156585!10039-101F3;0.0798043!10791-110H8;0.130324!10017-101C8;0.00271384!10045-101F9;0.197889!10509-107D5;0.109577!10839-111E2;0.0308383!10692-109F8;0.282445!10079-102A7;0.000176061!10078-102A6;1.40452e-05!10721-110A1;0.0012832!10569-108B2;0.000219111!10570-108B3;0.022819!10571-108B4;0.0273489!10647-109A8;0.00842993!10752-110D5;0.0096362!10782-110G8;0.183687!10726-110A6;0.883458!10018-101C9;0.0305934!10086-102B5;0.134043!10182-103D2;0.201275!10165-103B3;0.0940838!10499-107C4;0.0472789!10408-106B3;0.100921!10019-101D1;0.0496509!10068-101I5;0.00776209!10075-102A3;0.140833!10077-102A5;0.0048075!10727-110A7;0.00026644!10775-110G1;0.0113113!10412-106B7;0.0305182!12231-129F8;0.201464!12232-129F9;0.570137!12233-129G1;0.555725!12234-129G2;0.65575!10414-106B9;0.753777!10170-103B8;0.00784014!10183-103D3;0.32686!10150-102I6;0.260769!10174-103C3;0.125464!10155-103A2;0.0565651!10038-101F2;0.0370614!10838-111E1;0.0207796!10759-110E3;0.000214702!10514-107E1;0.00167673!10465-106H6;0.000815794!10691-109F7;0.122636!10843-111E6;0.95122!10844-111E7;0.0156018!11747-123G1;0.0134816!11748-123G2;0.303756!11749-123G3;0.46075!11750-123G4;0.272035!11751-123G5;0.458563!11840-124H4;0.0736103!11752-123G6;0.0267646!11753-123G7;0.297348!11754-123G8;0.120812!11755-123G9;0.35739!11756-123H1;0.585543!11833-124G6;0.782804!11760-123H5;0.980173!11836-124G9;0.871016!11758-123H3;0.116443!11835-124G8;0.324148!11762-123H7;0.202703!11838-124H2;0.0616917!11757-123H2;0.00624646!11759-123H4;0.439639!11761-123H6;0.966118!11842-124H6;0.523021!11837-124H1;0.955234!10568-108B1;0.0414353!13230-141I8;0.990153!13231-141I9;0.0718728!10696-109G3;0.042451!10493-107B7;0.220255!10494-107B8;0.0178934!10850-111F4;0.153766!10851-111F5;0.014052!10852-111F6;0.195961!10853-111F7;0.755419!10854-111F8;0.133583!10855-111F9;0.181792!10856-111G1;0.787583!10847-111F1;0.689026!10846-111E9;0.31669!10848-111F2;0.476087!10845-111E8;0.0542117!10857-111G2;0.000576409!10858-111G3;0.0542359!10156-103A3;0.0243827!11901-125F2;0.105661!11902-125F3;0.2091!11903-125F4;0.20976!10689-109F5;0.191168!10648-109A9;0.00711405!10784-110H1;0.00286151!10744-110C6;0.213247!10772-110F7;0.12438!10474-106I6;0.0905596!10600-108E6;0.432033!10684-109E9;0.000591532!12226-129F3;0.234727!12227-129F4;0.0592618!10508-107D4;0.010696!10539-107G8;0.0570159!10607-108F4;0.0372484!10555-107I6;0.000234123!10774-110F9;0.0112921!10637-108I7;0.000496788!10663-109C6;0.0222172!10728-110A8;0.00743287!10729-110A9;0.00122804!10430-106D7;0.429604!10730-110B1;0.00176857!10813-111B3;0.0884507!10812-111B2;0.279763!10037-101F1;0.0417735!10172-103C1;0.114893!10163-103B1;0.366731!10076-102A4;0.130391!10073-102A1;0.120129!10036-101E9;0.717816!10195-103E6;0.107109!10277-104E7;0.0851868!10434-106E2;0.415496!10550-107I1;0.0285572!10545-107H5;0.000353487!10544-107H4;0.00134364!10704-109H2;0.348781!10510-107D6;0.679239!10558-107I9;0.0105196!10020-101D2;0.0202891!10732-110B3;0.0235049!10049-101G4;0.462264!10698-109G5;0.607903!10437-106E5;0.0499876!10417-106C3;0.00169068!10035-101E8;0.111936!10171-103B9;0.133471!10157-103A4;0.240713!10034-101E7;0.142123!10072-101I9;0.111378!10199-103F1;0.653747!10200-103F2;0.0453319!10697-109G4;0.00162977!10723-110A3;0.0305976!10179-103C8;0.0248274!10160-103A7;0.196631!10180-103C9;0.376365!10162-103A9;0.588901!10021-101D3;0.626619!10840-111E3;0.0047367!10706-109H4;0.0364287!10033-101E6;0.00156277!10032-101E5;0.102989!10490-107B4;0.103688!10439-106E7;0.00546142!10022-101D4;0.0221562!10176-103C5;0.00611584!10469-106I1;0.227644!10067-101I4;0.0100004!10411-106B6;0.021893!10471-106I3;0.0135002!10030-101E3;0.000161987!10475-106I7;0.00429969!10787-110H4;0.000389615!10477-106I9;0.000323622!10695-109G2;6.87966e-05!11771-123I7;0.13268!11772-123I8;0.00696874!11773-123I9;0.019446!10093-102C3;0.036974!10442-106F1;0.172961!10442-106F1;0.0164421!10201-103F3;0.013529!10639-108I9;0.00454674!11843-124H7;0.00420163!11841-124H5;1.54403e-06!10693-109F9;0.000114857!10436-106E4;0.0017503!10483-107A6;0.0774969!10282-104F3;0.187042!10023-101D5;0.0243771!10066-101I3;0.00405152!10065-101I2;0.0275753!10800-110I8;0.00988351!10610-108F7;0.0083024!10841-111E4;0.0190147!10541-107H1;0.00389476!10842-111E5;0.0190936!10562-108A4;0.00399135!10024-101D6;0.178792!10064-101I1;0.0256539!10609-108F6;0.0151627!10048-101G3;0.07595!10781-110G7;0.0173722!10181-103D1;0.147521!10159-103A6;0.0479974!10056-101H2;0.0949928!10737-110B8;0.0481263!10025-101D7;0.377107!10044-101F8;0.00122891!10424-106D1;0.00509627!10463-106H4;0.0390062!10616-108G4;0.00771844!10486-107A9;0.258024!10062-101H8;0.000372746!10202-103F4;0.0480018!10158-103A5;0.0207053!10441-106E9;0.100679!10031-101E4;2.28034e-05!10063-101H9;0.073477!10063-101H9;0.931606!11763-123H8;0.00269143!11765-123I1;0.0107531!11768-123I4;0.000358954!10807-111A6;0.00536075!10790-110H7;7.83609e-05!10798-110I6;9.32876e-05!10786-110H3;0.0252173!10591-108D6;0.00476564!10593-108D8;0.00189549!10590-108D5;0.0161471!10026-101D8;0.00040026!10096-102C6;0.532156!10168-103B6;0.0382113!10154-103A1;0.116991!10209-103G2;0.0932502!10061-101H7;0.00107689!10027-101D9;0.0275574!10043-101F7;0.275023!10783-110G9;0.758397!10028-101E1;0.409759!10060-101H6;0.491862!10203-103F5;0.439421!10059-101H5;0.00199747!10047-101G2;0.00343896!10029-101E2;0.00133525!10058-101H4;0.000915519!10418-106C4;0.00957735!10492-107B6;0.00193257!10694-109G1;0.0055144!10797-110I5;0.538986!10057-101H3;0.140312!10100-102D1;0.000758141!10055-101H1;0.0335502!10204-103F6;0.053668!10191-103E2;0.0622941!10563-108A5;9.33788e-05
|name=CNhs10636_bu_f0
|name=CNhs10636_bu_f0
|tomtom_result=SP1#MA0079.2;-2;5.04218e-05;0.0240008;0.0478881;10;CCTCCCTGCCCC;CCCCGCCCCC;+!SP1#MA0079.2;-2;0.000494523;0.235393;0.234836;10;CCTCCCTGCCCC;ACCCCGCCCC;-!Pax4#MA0068.1;17;0.00206328;0.982119;0.497858;12;CCTCCCTGCCCC;GAAAAATTTCCCATACTCCACTCCCCCCCC;+!RXR::RAR_DR5#MA0159.1;5;0.00252204;1.20049;0.497858;12;CCTCCCTGCCCC;TGACCTCTCCGTGACCT;-!ESR1#MA0112.2;8;0.002621;1.2476;0.497858;12;CCTCCCTGCCCC;GGCCCAGGTCACCCTGACCT;+!btd#MA0443.1;-3;0.0035054;1.66857;0.529408;9;CCTCCCTGCCCC;TCCGCCCCCT;-!PPARG::RXRA#MA0065.2;1;0.00390194;1.85732;0.529408;12;CCTCCCTGCCCC;TGACCTTTGCCCTAC;-!Trl#MA0205.1;0;0.00666285;3.17152;0.779594;10;CCTCCCTGCCCC;TTGCTCTCTC;+!Klf4#MA0039.1;-3;0.00738758;3.51649;0.779594;9;CCTCCCTGCCCC;CCTTCCTTTA;-!Tal1::Gata1#MA0140.1;4;0.00899819;4.28314;0.796776;12;CCTCCCTGCCCC;CTTATCTGTCCCCACCAG;-!Pax5#MA0014.1;8;0.00922827;4.39266;0.796776;12;CCTCCCTGCCCC;CCGCTACGCTTCAGTGCTCT;-!EWSR1-FLI1#MA0149.1;0;0.0108468;5.16307;0.858477;12;CCTCCCTGCCCC;CCTTCCTTCCTTCCTTCC;-!RGM1#MA0366.1;-2;0.0124857;5.9432;0.911077;5;CCTCCCTGCCCC;CCCCT;-!MZF1_5-13#MA0057.1;1;0.0141058;6.71438;0.911077;9;CCTCCCTGCCCC;TTCCCCCTAC;-!MZF1_1-4#MA0056.1;-6;0.0160104;7.62095;0.911077;6;CCTCCCTGCCCC;TCCCCA;-!ELK1#MA0028.1;-1;0.0170687;8.12469;0.911077;10;CCTCCCTGCCCC;CTTCCGGCTC;-!abi4#MA0123.1;-3;0.0170687;8.12469;0.911077;9;CCTCCCTGCCCC;CGGTGCCCCC;+!GAL4#MA0299.1;2;0.0172671;8.21913;0.911077;12;CCTCCCTGCCCC;GAGTACTGTTCCCCG;-!CHA4#MA0283.1;-4;0.0200373;9.53777;0.98721;8;CCTCCCTGCCCC;TCTCCGCC;-
}}
}}

Latest revision as of 13:39, 7 September 2012

Full Name: CNhs10636_bu_f0

Motif matrix
POACGT
1113.225509709467961777.441116211357373.327768824788941.178671236652
2129.463349494150152458.77891083523280.33166115510599536.5991444977739
359.223970686079895974.043222565287252.5661243673001052119.3397483636
411.3638547321398542066.6388494460875191.5251660677477935.645195736291
566.39703219130862286.393802331038416.876383650274725835.5058478096408
63.2943606027728193199.5972723016522.2814330778326320.0
7276.2101628915721739.830628359683033.49383449431163572885.638440236695
810.8499524237934221401.55715583166171412.6118527532192380.15410497359045
958.620939528521282437.42599772060499.185483766882609.9406449662487
10113.979559188820192283.88746543611616.993034625154607790.3130067321727
1194.13878335208262557.39609087490511.79448923351924541.8437025217498
12260.449450508005842206.472940885889338.042858661267765700.2078159270975

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
SP1#MA0079.2-25.04218e-050.02400080.047888110CCTCCCTGCCCCCCCCGCCCCC+
SP1#MA0079.2-20.0004945230.2353930.23483610CCTCCCTGCCCCACCCCGCCCC-
Pax4#MA0068.1170.002063280.9821190.49785812CCTCCCTGCCCCGAAAAATTTCCCATACTCCACTCCCCCCCC+
RXR::RAR_DR5#MA0159.150.002522041.200490.49785812CCTCCCTGCCCCTGACCTCTCCGTGACCT-
ESR1#MA0112.280.0026211.24760.49785812CCTCCCTGCCCCGGCCCAGGTCACCCTGACCT+
btd#MA0443.1-30.00350541.668570.5294089CCTCCCTGCCCCTCCGCCCCCT-
PPARG::RXRA#MA0065.210.003901941.857320.52940812CCTCCCTGCCCCTGACCTTTGCCCTAC-
Trl#MA0205.100.006662853.171520.77959410CCTCCCTGCCCCTTGCTCTCTC+
Klf4#MA0039.1-30.007387583.516490.7795949CCTCCCTGCCCCCCTTCCTTTA-
Tal1::Gata1#MA0140.140.008998194.283140.79677612CCTCCCTGCCCCCTTATCTGTCCCCACCAG-
Pax5#MA0014.180.009228274.392660.79677612CCTCCCTGCCCCCCGCTACGCTTCAGTGCTCT-
EWSR1-FLI1#MA0149.100.01084685.163070.85847712CCTCCCTGCCCCCCTTCCTTCCTTCCTTCC-
RGM1#MA0366.1-20.01248575.94320.9110775CCTCCCTGCCCCCCCCT-
MZF1_5-13#MA0057.110.01410586.714380.9110779CCTCCCTGCCCCTTCCCCCTAC-
MZF1_1-4#MA0056.1-60.01601047.620950.9110776CCTCCCTGCCCCTCCCCA-
ELK1#MA0028.1-10.01706878.124690.91107710CCTCCCTGCCCCCTTCCGGCTC-
abi4#MA0123.1-30.01706878.124690.9110779CCTCCCTGCCCCCGGTGCCCCC+
GAL4#MA0299.120.01726718.219130.91107712CCTCCCTGCCCCGAGTACTGTTCCCCG-
CHA4#MA0283.1-40.02003739.537770.987218CCTCCCTGCCCCTCTCCGCC-
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