FFCP PHASE1:Hg19::chr17:38487239..38487261,+: Difference between revisions
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|ontology_enrichment_celltype=CL:0002057!1.48e-22!42;CL:0000860!7.18e-20!45;CL:0000766!3.24e-18!76;CL:0000557!2.93e-16!71;CL:0000839!8.95e-15!70;CL:0002009!1.20e-14!65;CL:0002194!1.16e-13!63;CL:0000576!1.16e-13!63;CL:0000040!1.16e-13!63;CL:0000559!1.16e-13!63;CL:0000763!3.56e-10!112;CL:0000049!3.56e-10!112;CL:0000738!8.59e-10!140;CL:0002031!4.68e-09!124;CL:0002087!2.68e-07!119 | |ontology_enrichment_celltype=CL:0002057!1.48e-22!42;CL:0000860!7.18e-20!45;CL:0000766!3.24e-18!76;CL:0000557!2.93e-16!71;CL:0000839!8.95e-15!70;CL:0002009!1.20e-14!65;CL:0002194!1.16e-13!63;CL:0000576!1.16e-13!63;CL:0000040!1.16e-13!63;CL:0000559!1.16e-13!63;CL:0000763!3.56e-10!112;CL:0000049!3.56e-10!112;CL:0000738!8.59e-10!140;CL:0002031!4.68e-09!124;CL:0002087!2.68e-07!119 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.74e-40;33!CL:0002057;1.74e-40;33!CL:0000473;2.77e-29;39!CL:0000234;2.77e-29;39!CL:0000576;8.82e-24;48!CL:0000766;7.00e-20;69!CL:0000775;3.85e-13;3!CL:0000097;8.63e-13;5!CL:0000763;2.41e-10;100!CL:0000094;2.65e-08;8!CL:0000163;4.18e-07;9!CL:0000738;6.19e-07;136 | |ontology_enrichment_celltype_v019=CL:0000860;1.74e-40;33!CL:0002057;1.74e-40;33!CL:0000473;2.77e-29;39!CL:0000234;2.77e-29;39!CL:0000576;8.82e-24;48!CL:0000766;7.00e-20;69!CL:0000775;3.85e-13;3!CL:0000097;8.63e-13;5!CL:0000763;2.41e-10;100!CL:0000094;2.65e-08;8!CL:0000163;4.18e-07;9!CL:0000738;6.19e-07;136 | ||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.09e-42,72;CL:0000860,8.53e-38,42;CL:0002057,8.53e-38,42;CL:0000839,3.83e-34,66;CL:0000557,1.54e-33,67;CL:0000473,2.34e-32,48;CL:0000234,2.34e-32,48;CL:0002194,3.75e-27,59;CL:0000576,3.75e-27,59;CL:0000040,3.75e-27,59;CL:0000559,3.75e-27,59;CL:0002009,4.37e-26,61;CL:0000763,8.41e-26,108;CL:0000049,8.41e-26,108;CL:0000738,6.03e-19,136;CL:0002031,7.28e-16,120;CL:0002032,7.55e-15,161;CL:0000837,7.55e-15,161;CL:0000037,6.37e-14,168;CL:0000775,3.87e-13,3;CL:0000988,7.68e-13,177;CL:0000097,9.35e-13,5;CL:0002028,9.35e-13,5;CL:0002087,2.69e-11,115;CL:0000094,2.56e-08,8;CL:0000163,4.36e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;1.10e-27;42!CL:0000049;1.40e-10;108 | |ontology_enrichment_development_v019=CL:0002057;1.10e-27;42!CL:0000049;1.40e-10;108 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!4.15e-15!80;UBERON:0001474!1.40e-14!86;UBERON:0004765!6.87e-13!101;UBERON:0001434!6.87e-13!101;UBERON:0002390!3.12e-12!102;UBERON:0003061!3.12e-12!102;UBERON:0002193!1.35e-11!112;UBERON:0002405!2.87e-11!115;UBERON:0003081!9.98e-07!216 | |ontology_enrichment_uberon=UBERON:0002371!4.15e-15!80;UBERON:0001474!1.40e-14!86;UBERON:0004765!6.87e-13!101;UBERON:0001434!6.87e-13!101;UBERON:0002390!3.12e-12!102;UBERON:0003061!3.12e-12!102;UBERON:0002193!1.35e-11!112;UBERON:0002405!2.87e-11!115;UBERON:0003081!9.98e-07!216 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.28e-29,76;UBERON:0001474,3.16e-26,82;UBERON:0002405,2.80e-24,93;UBERON:0004765,2.56e-23,90;UBERON:0001434,4.80e-22,100;UBERON:0002390,6.97e-21,98;UBERON:0003061,6.97e-21,98;UBERON:0002193,5.71e-20,108;UBERON:0002204,1.31e-12,167;UBERON:0003081,4.57e-10,203;UBERON:0000926,4.18e-08,315;UBERON:0004120,4.18e-08,315;UBERON:0006603,4.18e-08,315 | |||
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| ||
|short_description=p12@RARA | |short_description=p12@RARA | ||
}} | }} |
Revision as of 13:28, 17 November 2012
Short description: | p12@RARA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_12_at_RARA_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | -108bp_to_X06614_5end |
EntrezGene: | RARA |
HGNC: | 9864 |
UniProt: | P10276 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.09e-42 | 72 |
classical monocyte | 8.53e-38 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.53e-38 | 42 |
myeloid lineage restricted progenitor cell | 3.83e-34 | 66 |
granulocyte monocyte progenitor cell | 1.54e-33 | 67 |
defensive cell | 2.34e-32 | 48 |
phagocyte | 2.34e-32 | 48 |
monopoietic cell | 3.75e-27 | 59 |
monocyte | 3.75e-27 | 59 |
monoblast | 3.75e-27 | 59 |
promonocyte | 3.75e-27 | 59 |
macrophage dendritic cell progenitor | 4.37e-26 | 61 |
myeloid cell | 8.41e-26 | 108 |
common myeloid progenitor | 8.41e-26 | 108 |
leukocyte | 6.03e-19 | 136 |
hematopoietic lineage restricted progenitor cell | 7.28e-16 | 120 |
hematopoietic oligopotent progenitor cell | 7.55e-15 | 161 |
hematopoietic multipotent progenitor cell | 7.55e-15 | 161 |
hematopoietic stem cell | 6.37e-14 | 168 |
neutrophil | 3.87e-13 | 3 |
hematopoietic cell | 7.68e-13 | 177 |
mast cell | 9.35e-13 | 5 |
basophil mast progenitor cell | 9.35e-13 | 5 |
nongranular leukocyte | 2.69e-11 | 115 |
granulocyte | 2.56e-08 | 8 |
endocrine cell | 4.36e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 8.28e-29 | 76 |
bone element | 3.16e-26 | 82 |
immune system | 2.80e-24 | 93 |
skeletal element | 2.56e-23 | 90 |
skeletal system | 4.80e-22 | 100 |
hematopoietic system | 6.97e-21 | 98 |
blood island | 6.97e-21 | 98 |
hemolymphoid system | 5.71e-20 | 108 |
musculoskeletal system | 1.31e-12 | 167 |
lateral plate mesoderm | 4.57e-10 | 203 |
mesoderm | 4.18e-08 | 315 |
mesoderm-derived structure | 4.18e-08 | 315 |
presumptive mesoderm | 4.18e-08 | 315 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.