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Cytoscape test3: Difference between revisions

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<br /><input type="checkbox" id="cyto_edges_promotes" value="promotes" checked>Promoters</input>
<br /><input type="checkbox" id="cyto_edges_promotes" value="promotes" checked>Promoters</input>
</div>
</div>
<div id="z_filter" class="slider">Promoter Z-Score filter:</div>
<div id="z_filter" class="slider">Promoter Z-Score:</div>
<div id="nodes_type_filter" style="display: none;">
 
<label class="filter">Show nodes:</label>
<input type="checkbox" id="cyto_nodes_tf_src" value="tf" checked>Source TF (Outdegree > 0)</input>
<br /><input type="checkbox" id="cyto_nodes_tf" value="tf" checked>Target TF (Outdegree = 0)</input>
<br /><input type="checkbox" id="cyto_nodes_motif" value="motif" checked>MOTIF</input>
</div>
<p />
<p />
<div id="degree_filter" class="slider">Motif degree filter:</div>
<div id="degree_filter" class="slider">Motif degree:</div>
<div id="tf_indegree_filter" class="slider">TF indegree filter:</div>
<div id="tf_indegree_filter" class="slider">TF indegree:</div>
 
<div id="tf_outdegree_filter" class="slider">TF outdegree filter:</div>
<div id="nodes_type_filter">
<label class="filter">TF outdegree:</label>
<input type="checkbox" id="cyto_nodes_tf_src" value="tf" checked>Source (Outdegree > 0)</input>
<br /><input type="checkbox" id="cyto_nodes_tf" value="tf" checked>Target (Outdegree = 0)</input>
</div>
 
</div>
</div>

Revision as of 11:25, 20 July 2012

FF:10717-109I6, TF to Motif to TF network

Mouseover nodes and edges to see attributes. Motifs are shown in orange, TFs are shown in blue. Promoter and z-score are attributes of the Motif to TF edges (blue arrow). TF to Motif edges are shown in orange.

Motifs shown are the top (maximum 30) motifs in the sample. TFs shown have at least one CAGE promoter with at at least 10 TPM expression (RLE normalized) in the sample. Edges shown have a z-score of at least 1.5 (based on correlation between motif activity and promoter expression).

Nodes
Edges
TF->MOTIF
Promoters
Promoter Z-Score:

Motif degree:
TF indegree:
Source (Outdegree > 0)
Target (Outdegree = 0)

LEGEND: TF , MOTIF ,
MOTIF->TF , TF->MOTIF