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{{UBERON
{{UBERON
|id=UBERON:0010259
|alt_id=
|name=1st arch mesenchyme from neural crest
|namespace=
|def=
|xref=EMAPA:16129
|is_a=UBERON:0010042;;UBERON:0010258;;UBERON:0010359
|synonym="mesenchyme derived from neural crest of mesenchyme of 1st arch" EXACT [EMAPA:16129]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=UBERON:0002342;;UBERON:0003852
|develops_from=UBERON:0002342;;UBERON:0003852
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0010259
|is_a=UBERON:0010042 ;;UBERON:0010258 ;;UBERON:0010359
|is_obsolete=
|located_in=
|located_in=
|name=1st arch mesenchyme from neural crest
|namespace=
|obo_creation_date=
|part_of=UBERON:0010042
|part_of=UBERON:0010042
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="mesenchyme derived from neural crest of mesenchyme of 1st arch" EXACT [EMAPA:16129]
|union_of=
|xref=EMAPA:16129
}}
}}

Revision as of 11:49, 12 September 2014

Name:1st arch mesenchyme from neural crest
Xrefs:
links:
EMAPA:16129
Synonyms: "mesenchyme derived from neural crest of mesenchyme of 1st arch" EXACT [EMAPA:16129]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0010042(1st arch mesenchyme),UBERON:0010258(mesenchyme from rhombencephalic neural crest),UBERON:0010359(pharyngeal arch mesenchyme from neural crest)
develops_from:UBERON:0002342(neural crest),UBERON:0003852(rhombencephalon neural crest)
part_of:UBERON:0010042(1st arch mesenchyme)



Children

is a:UBERON:0010253 (1st arch maxillary mesenchyme from neural crest)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010259 (1st arch mesenchyme from neural crest), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_ef376105729634ca6f1ed5c3b6da6b3ep14@C17orf67
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_ef376105729634ca6f1ed5c3b6da6b3ep14@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_bdbf4964c7f6063047be44e89e9e6ebfp11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_bdbf4964c7f6063047be44e89e9e6ebfp12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_bdbf4964c7f6063047be44e89e9e6ebfp@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_bdbf4964c7f6063047be44e89e9e6ebfp13@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_bdbf4964c7f6063047be44e89e9e6ebfp11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_bdbf4964c7f6063047be44e89e9e6ebfp13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_bdbf4964c7f6063047be44e89e9e6ebfp@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_bdbf4964c7f6063047be44e89e9e6ebfp12@C17orf67
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_a3209e5daa4d0da189d2a65b225bcc95p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_a3209e5daa4d0da189d2a65b225bcc95p14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_a3209e5daa4d0da189d2a65b225bcc95p14@MAB21L2
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_a3209e5daa4d0da189d2a65b225bcc95p@chr5:75912402..75912418, -
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_fe3aa8c4c1eedb1c8694ebed264e7188p@chr4:151505582..151505614, +
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_fe3aa8c4c1eedb1c8694ebed264e7188p@chr4:151505582..151505614, +
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_a8c6c6cf6747d6eb05ebc74c79411ec6p17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_a8c6c6cf6747d6eb05ebc74c79411ec6p17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_a8c6c6cf6747d6eb05ebc74c79411ec6p@chr8:57354278..57354286, +
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_a8c6c6cf6747d6eb05ebc74c79411ec6p9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_a8c6c6cf6747d6eb05ebc74c79411ec6p@chr8:57354278..57354286, +
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_a8c6c6cf6747d6eb05ebc74c79411ec6p9@C17orf67
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_804fb6decbaf9e0e8fffdc6307aeebf9p@chr8:57802672..57802682, -
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_804fb6decbaf9e0e8fffdc6307aeebf9p@chr8:57802672..57802682, -
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_b5b2b3e34047ed94275435e138a1088cp7@ALX1
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_b5b2b3e34047ed94275435e138a1088cp@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_b5b2b3e34047ed94275435e138a1088cp1@AK123925
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_b5b2b3e34047ed94275435e138a1088cp7@ALX1
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_b5b2b3e34047ed94275435e138a1088cp@chr5:75913767..75913778, -
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_b5b2b3e34047ed94275435e138a1088cp1@AK123925
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_0cc762af859aecb4855422156ed041dap@chr2:33519090..33519092, +
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_0cc762af859aecb4855422156ed041dap23@FLT1
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_0cc762af859aecb4855422156ed041dap@chr2:33519090..33519092, +
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_0cc762af859aecb4855422156ed041dap23@FLT1
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_33f3c3af2119bf843d8df7767bd32e98p@chr8:57353666..57353675, -
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_33f3c3af2119bf843d8df7767bd32e98p@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_33f3c3af2119bf843d8df7767bd32e98p@chr8:57353779..57353790, -
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_33f3c3af2119bf843d8df7767bd32e98p@chr8:57353666..57353675, -
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_33f3c3af2119bf843d8df7767bd32e98p@chr8:57353779..57353790, -
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_33f3c3af2119bf843d8df7767bd32e98p@chr8:57354143..57354152, +
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_d75f0bcfa7d92ee8deaab901eaca8b1fp12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_d75f0bcfa7d92ee8deaab901eaca8b1fp8@LHX8
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_d75f0bcfa7d92ee8deaab901eaca8b1fp2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_d75f0bcfa7d92ee8deaab901eaca8b1fp8@LHX8
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_d75f0bcfa7d92ee8deaab901eaca8b1fp12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_d75f0bcfa7d92ee8deaab901eaca8b1fp2@TAS1R1
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_6b6003cd0a32bad4d8b1ff3ba50cd04cp@chr5:75912831..75912842, -
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_6b6003cd0a32bad4d8b1ff3ba50cd04cp@chr16:67687543..67687559, -
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_6b6003cd0a32bad4d8b1ff3ba50cd04cp@chr5:75912831..75912842, -
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_6b6003cd0a32bad4d8b1ff3ba50cd04cp@chr16:67687543..67687559, -
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_a6485e2e079fc79bad3004dc23c76445p@chr9:125165007..125165016, +
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_a6485e2e079fc79bad3004dc23c76445p@chr6:46190219..46190230, -
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_a6485e2e079fc79bad3004dc23c76445p@chr9:125165007..125165016, +
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_a6485e2e079fc79bad3004dc23c76445p@chr6:46190219..46190230, -
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_7dd13ab4ba55e4f44c846864b5f82c77p4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_7dd13ab4ba55e4f44c846864b5f82c77p@chr10:15760985..15760992, -
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_7dd13ab4ba55e4f44c846864b5f82c77p4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_7dd13ab4ba55e4f44c846864b5f82c77p5@PENK
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_7dd13ab4ba55e4f44c846864b5f82c77p@chr10:15760985..15760992, -
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_7dd13ab4ba55e4f44c846864b5f82c77p5@PENK
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_19efaa242011a718a0e7bd61b050ff14p9@SIX1
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_19efaa242011a718a0e7bd61b050ff14p9@SIX1
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_d69a7051e590b5f3fd6230e059d20678p@chr6:134327986..134327991, -
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_d69a7051e590b5f3fd6230e059d20678p@chr6:134327986..134327991, -
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_e3064a25d82b32b8f9690eb302420e6ep@chr8:57353676..57353688, -
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_e3064a25d82b32b8f9690eb302420e6ep@chr13:58291223..58291226, +
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_e3064a25d82b32b8f9690eb302420e6ep@chr8:57353676..57353688, -
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_e3064a25d82b32b8f9690eb302420e6ep@chr13:58291223..58291226, +
9.85e-34FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_deb6d05bc958c63474676ec77611b60fp12@FBN2
9.85e-34FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_deb6d05bc958c63474676ec77611b60fp@chr5:19721484..19721507, -
9.85e-34FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_deb6d05bc958c63474676ec77611b60fp4@PLAC1
9.85e-34FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_deb6d05bc958c63474676ec77611b60fp12@FBN2
9.85e-34FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_deb6d05bc958c63474676ec77611b60fp@chr5:19721484..19721507, -
9.85e-34FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_deb6d05bc958c63474676ec77611b60fp4@PLAC1
7.48e-30FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_8208bcb4b4ffb8899759925754e7b2c6p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_8208bcb4b4ffb8899759925754e7b2c6p@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_8208bcb4b4ffb8899759925754e7b2c6p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_8208bcb4b4ffb8899759925754e7b2c6p@chr8:57353982..57353991, -
7.48e-30FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_8208bcb4b4ffb8899759925754e7b2c6p@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_8208bcb4b4ffb8899759925754e7b2c6p@chr8:57353982..57353991, -
9.99e-30FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_5d1689a4459f2fed4858d241ede781bfp10@ITGA8
9.99e-30FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_5d1689a4459f2fed4858d241ede781bfp7@SHOX2
9.99e-30FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_5d1689a4459f2fed4858d241ede781bfp10@ITGA8
9.99e-30FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_5d1689a4459f2fed4858d241ede781bfp7@SHOX2
1.33e-29FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_d0d5a05670a49a37c220472e05bd21afp@chr22:28193943..28193956, -
1.33e-29FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_d0d5a05670a49a37c220472e05bd21afp@chrX:132670143..132670152, -
1.33e-29FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_d0d5a05670a49a37c220472e05bd21afp@chr17:79071218..79071221, -
1.33e-29FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_d0d5a05670a49a37c220472e05bd21afp@chr22:28193943..28193956, -
1.33e-29FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_d0d5a05670a49a37c220472e05bd21afp@chrX:132670143..132670152, -
1.33e-29FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_d0d5a05670a49a37c220472e05bd21afp@chr17:79071218..79071221, -
1.78e-29FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_1e651e95c48328ed03228d5eabbef92ep@chr1:21904551..21904569, -
1.78e-29FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_1e651e95c48328ed03228d5eabbef92ep@chr1:21904551..21904569, -
3.16e-29FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_20c06c85e5b828fb360116261e2e9ac6p@chr8:57359975..57359992, -
3.16e-29FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_20c06c85e5b828fb360116261e2e9ac6p18@MEF2D
3.16e-29FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_20c06c85e5b828fb360116261e2e9ac6p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_20c06c85e5b828fb360116261e2e9ac6p@chr8:57359975..57359992, -
3.16e-29FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_20c06c85e5b828fb360116261e2e9ac6p18@MEF2D
3.16e-29FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_20c06c85e5b828fb360116261e2e9ac6p@chr14:89044406..89044416, +
4.2e-29FFCP PHASE2:Hg19::chr4:151503350..151503358,+#_3503481c68358f87a1dedefedfa30ce3p11@MAB21L2
4.2e-29FFCP PHASE1:Hg19::chr1:6615468..6615485,+#_3503481c68358f87a1dedefedfa30ce3p1@TAS1R1

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