UBERON:0010258: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def= | ||
|derives_from= | |derives_from= | ||
|develops_from=UBERON:0003852 | |develops_from=UBERON:0003852 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0010258 | |||
|is_a=UBERON:0007213 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=mesenchyme from rhombencephalic neural crest | |||
|namespace= | |||
|obo_creation_date= | |||
|part_of=UBERON:0007213 | |part_of=UBERON:0007213 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym= | ||
|union_of= | |||
|xref=EHDAA2:0004423 | |||
}} | }} | ||
Revision as of 11:49, 12 September 2014
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0007213(mesenchyme derived from head neural crest) |
|---|---|
| develops_from: | UBERON:0003852(rhombencephalon neural crest) |
| part_of: | UBERON:0007213(mesenchyme derived from head neural crest) |
Children
| is a: | UBERON:0005705 (primary palate mesenchyme),UBERON:0010259 (1st arch mesenchyme from neural crest),UBERON:0010334 (maxillary process mesenchyme from neural crest) |
|---|---|
| part of: | UBERON:0010253 (1st arch maxillary mesenchyme from neural crest) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010258 (mesenchyme from rhombencephalic neural crest), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_14d1eb73314a7d940e280c06f56c8015 | p14@C17orf67 |
| 5.42e-195 | FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_14d1eb73314a7d940e280c06f56c8015 | p14@C17orf67 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_b2327774549a0764ae59e4a7a0536ffc | p11@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_b2327774549a0764ae59e4a7a0536ffc | p12@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_b2327774549a0764ae59e4a7a0536ffc | p@chr8:57353655..57353662, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_b2327774549a0764ae59e4a7a0536ffc | p13@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_b2327774549a0764ae59e4a7a0536ffc | p11@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_b2327774549a0764ae59e4a7a0536ffc | p13@C17orf67 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_b2327774549a0764ae59e4a7a0536ffc | p@chr8:57353655..57353662, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_b2327774549a0764ae59e4a7a0536ffc | p12@C17orf67 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_69c66c06e2ec2f07908a1db606ee2b1b | p@chr5:75912402..75912418, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_69c66c06e2ec2f07908a1db606ee2b1b | p@chr5:75912402..75912418, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_69c66c06e2ec2f07908a1db606ee2b1b | p14@MAB21L2 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_69c66c06e2ec2f07908a1db606ee2b1b | p14@MAB21L2 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_8b3a22653f980ebaf9dc1430d55aae06 | p@chr4:151505582..151505614, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_8b3a22653f980ebaf9dc1430d55aae06 | p@chr4:151505582..151505614, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_7ef55ecc38ce1f518f11ee727986b05e | p9@C17orf67 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_7ef55ecc38ce1f518f11ee727986b05e | p17@RSRC1 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_7ef55ecc38ce1f518f11ee727986b05e | p17@RSRC1 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_7ef55ecc38ce1f518f11ee727986b05e | p@chr8:57354278..57354286, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_7ef55ecc38ce1f518f11ee727986b05e | p9@C17orf67 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_7ef55ecc38ce1f518f11ee727986b05e | p@chr8:57354278..57354286, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_c203c4b01e6a5ac1af8062ce54991488 | p@chr8:57802672..57802682, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_c203c4b01e6a5ac1af8062ce54991488 | p@chr8:57802672..57802682, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_b395f27bb951df63639be68ab5dc9440 | p1@AK123925 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_b395f27bb951df63639be68ab5dc9440 | p@chr5:75913767..75913778, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_b395f27bb951df63639be68ab5dc9440 | p7@ALX1 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_b395f27bb951df63639be68ab5dc9440 | p7@ALX1 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_b395f27bb951df63639be68ab5dc9440 | p1@AK123925 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_b395f27bb951df63639be68ab5dc9440 | p@chr5:75913767..75913778, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_227a479e380a22bf39f9cbb04c96ab8f | p@chr2:33519090..33519092, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_227a479e380a22bf39f9cbb04c96ab8f | p23@FLT1 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_227a479e380a22bf39f9cbb04c96ab8f | p23@FLT1 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_227a479e380a22bf39f9cbb04c96ab8f | p@chr2:33519090..33519092, + |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_6c65aa93391cd6e040f0b1c1a58dfc7b | p@chr8:57353666..57353675, - |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_6c65aa93391cd6e040f0b1c1a58dfc7b | p@chr8:57354143..57354152, + |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_6c65aa93391cd6e040f0b1c1a58dfc7b | p@chr8:57353779..57353790, - |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_6c65aa93391cd6e040f0b1c1a58dfc7b | p@chr8:57353666..57353675, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_6c65aa93391cd6e040f0b1c1a58dfc7b | p@chr8:57353779..57353790, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_6c65aa93391cd6e040f0b1c1a58dfc7b | p@chr8:57354143..57354152, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_0698ff47211217261cf9b67c2a0a3f9f | p12@FAM65C |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_0698ff47211217261cf9b67c2a0a3f9f | p8@LHX8 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_0698ff47211217261cf9b67c2a0a3f9f | p2@TAS1R1 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_0698ff47211217261cf9b67c2a0a3f9f | p8@LHX8 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_0698ff47211217261cf9b67c2a0a3f9f | p12@FAM65C |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_0698ff47211217261cf9b67c2a0a3f9f | p2@TAS1R1 |
| 2.21e-40 | FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_2673c87e70cbb2a39da2b1ee8e70e518 | p@chr5:75912831..75912842, - |
| 2.21e-40 | FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_2673c87e70cbb2a39da2b1ee8e70e518 | p@chr16:67687543..67687559, - |
| 2.21e-40 | FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_2673c87e70cbb2a39da2b1ee8e70e518 | p@chr5:75912831..75912842, - |
| 2.21e-40 | FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_2673c87e70cbb2a39da2b1ee8e70e518 | p@chr16:67687543..67687559, - |
| 3.3e-40 | FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_2c12b28ec6f8d6e5b01f19b444d69241 | p@chr9:125165007..125165016, + |
| 3.3e-40 | FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_2c12b28ec6f8d6e5b01f19b444d69241 | p@chr6:46190219..46190230, - |
| 3.3e-40 | FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_2c12b28ec6f8d6e5b01f19b444d69241 | p@chr9:125165007..125165016, + |
| 3.3e-40 | FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_2c12b28ec6f8d6e5b01f19b444d69241 | p@chr6:46190219..46190230, - |
| 1.84e-34 | FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_fd59d864e0e92cc04cb9b2cffbbb8a85 | p@chr10:15760985..15760992, - |
| 1.84e-34 | FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_fd59d864e0e92cc04cb9b2cffbbb8a85 | p4@CPZ |
| 1.84e-34 | FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_fd59d864e0e92cc04cb9b2cffbbb8a85 | p4@CPZ |
| 1.84e-34 | FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_fd59d864e0e92cc04cb9b2cffbbb8a85 | p5@PENK |
| 1.84e-34 | FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_fd59d864e0e92cc04cb9b2cffbbb8a85 | p@chr10:15760985..15760992, - |
| 1.84e-34 | FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_fd59d864e0e92cc04cb9b2cffbbb8a85 | p5@PENK |
| 2.58e-34 | FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_afa5f1fda8cad71f10e0e8bd90692f72 | p9@SIX1 |
| 2.58e-34 | FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_afa5f1fda8cad71f10e0e8bd90692f72 | p9@SIX1 |
| 5.05e-34 | FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_a29dcd04decf8025fbf8d9e46c283b3a | p@chr6:134327986..134327991, - |
| 5.05e-34 | FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_a29dcd04decf8025fbf8d9e46c283b3a | p@chr6:134327986..134327991, - |
| 7.06e-34 | FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_ead9c4ad25a2798e422bc4de742e96ad | p@chr8:57353676..57353688, - |
| 7.06e-34 | FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_ead9c4ad25a2798e422bc4de742e96ad | p@chr13:58291223..58291226, + |
| 7.06e-34 | FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_ead9c4ad25a2798e422bc4de742e96ad | p@chr8:57353676..57353688, - |
| 7.06e-34 | FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_ead9c4ad25a2798e422bc4de742e96ad | p@chr13:58291223..58291226, + |
| 9.85e-34 | FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_60c9fdb541d6e95e2d3ca5ed0fabd3b4 | p12@FBN2 |
| 9.85e-34 | FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_60c9fdb541d6e95e2d3ca5ed0fabd3b4 | p@chr5:19721484..19721507, - |
| 9.85e-34 | FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_60c9fdb541d6e95e2d3ca5ed0fabd3b4 | p4@PLAC1 |
| 9.85e-34 | FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_60c9fdb541d6e95e2d3ca5ed0fabd3b4 | p12@FBN2 |
| 9.85e-34 | FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_60c9fdb541d6e95e2d3ca5ed0fabd3b4 | p@chr5:19721484..19721507, - |
| 9.85e-34 | FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_60c9fdb541d6e95e2d3ca5ed0fabd3b4 | p4@PLAC1 |
| 7.48e-30 | FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_3c30427a2ad63ed3d72d0bf35d40fc8b | p@chr8:57353804..57353821, - |
| 7.48e-30 | FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_3c30427a2ad63ed3d72d0bf35d40fc8b | p@chr8:57354360..57354367, + |
| 7.48e-30 | FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_3c30427a2ad63ed3d72d0bf35d40fc8b | p@chr8:57353804..57353821, - |
| 7.48e-30 | FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_3c30427a2ad63ed3d72d0bf35d40fc8b | p@chr8:57353982..57353991, - |
| 7.48e-30 | FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_3c30427a2ad63ed3d72d0bf35d40fc8b | p@chr8:57354360..57354367, + |
| 7.48e-30 | FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_3c30427a2ad63ed3d72d0bf35d40fc8b | p@chr8:57353982..57353991, - |
| 9.99e-30 | FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_ce5793f0abeb1bdc38fdd3c12f171a07 | p10@ITGA8 |
| 9.99e-30 | FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_ce5793f0abeb1bdc38fdd3c12f171a07 | p7@SHOX2 |
| 9.99e-30 | FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_ce5793f0abeb1bdc38fdd3c12f171a07 | p10@ITGA8 |
| 9.99e-30 | FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_ce5793f0abeb1bdc38fdd3c12f171a07 | p7@SHOX2 |
| 1.33e-29 | FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_4c8a653c9ae9ccd76b2d01013d4ade1e | p@chr22:28193943..28193956, - |
| 1.33e-29 | FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_4c8a653c9ae9ccd76b2d01013d4ade1e | p@chrX:132670143..132670152, - |
| 1.33e-29 | FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_4c8a653c9ae9ccd76b2d01013d4ade1e | p@chr17:79071218..79071221, - |
| 1.33e-29 | FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_4c8a653c9ae9ccd76b2d01013d4ade1e | p@chr22:28193943..28193956, - |
| 1.33e-29 | FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_4c8a653c9ae9ccd76b2d01013d4ade1e | p@chrX:132670143..132670152, - |
| 1.33e-29 | FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_4c8a653c9ae9ccd76b2d01013d4ade1e | p@chr17:79071218..79071221, - |
| 1.78e-29 | FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_3dd06d822d83b1a3b0eed02c5d0ff251 | p@chr1:21904551..21904569, - |
| 1.78e-29 | FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_3dd06d822d83b1a3b0eed02c5d0ff251 | p@chr1:21904551..21904569, - |
| 3.16e-29 | FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_c5ec2185a7aff2305460af703226e619 | p@chr14:89044406..89044416, + |
| 3.16e-29 | FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_c5ec2185a7aff2305460af703226e619 | p@chr8:57359975..57359992, - |
| 3.16e-29 | FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_c5ec2185a7aff2305460af703226e619 | p@chr14:89044406..89044416, + |
| 3.16e-29 | FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_c5ec2185a7aff2305460af703226e619 | p18@MEF2D |
| 3.16e-29 | FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_c5ec2185a7aff2305460af703226e619 | p@chr8:57359975..57359992, - |
| 3.16e-29 | FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_c5ec2185a7aff2305460af703226e619 | p18@MEF2D |
| 4.2e-29 | FFCP PHASE1:Hg19::chr13:36046127..36046134,+#_c217b88c3c07949c1a2807c13840280d | p@chr13:36046127..36046134, + |
| 4.2e-29 | FFCP PHASE2:Hg19::chr4:151503350..151503358,+#_c217b88c3c07949c1a2807c13840280d | p11@MAB21L2 |
