Personal tools

UBERON:0007844: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0007844
|alt_id=
|name=cartilaginous element
|namespace=
|def="Skeletal element that is composed of cartilage tissue and may be permanent or transient." [VSAO:curator]
|xref=AAO:0011130;;FMA:55107;;VSAO:0000000;;XAO:0004013;;ZFA:0001501
|is_a=UBERON:0004765
|synonym="cartilage" RELATED [VSAO:0000000];;"cartilage element" EXACT [];;"cartilage organ" EXACT [FMA:55107];;"chondrogenic element" EXACT [VSAO:0000000]
|comment=AO notes: TAO still mixes tissue and element
|comment=AO notes: TAO still mixes tissue and element
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Skeletal element that is composed of cartilage tissue and may be permanent or transient." [VSAO:curator]
|subset=organ_slim
|derives_from=
|derives_from=
|develops_from=UBERON:0005863
|develops_from=UBERON:0005863
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0007844
|is_a=UBERON:0004765
|is_obsolete=
|located_in=
|located_in=
|name=cartilaginous element
|namespace=
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=organ_slim
|preceded_by=
|synonym="cartilage" RELATED [VSAO:0000000];;"cartilage element" EXACT [];;"cartilage organ" EXACT [FMA:55107];;"chondrogenic element" EXACT [VSAO:0000000]
|union_of=
|xref=AAO:0011130;;FMA:55107;;VSAO:0000000;;XAO:0004013;;ZFA:0001501
}}
}}

Revision as of 11:44, 12 September 2014

Name:cartilaginous element
Definition:"Skeletal element that is composed of cartilage tissue and may be permanent or transient." [VSAO:curator]
Xrefs:
links:

AAO:0011130
FMA:55107
VSAO:0000000
XAO:0004013

ZFA:0001501
Synonyms: "cartilage" RELATED [VSAO:0000000]
"cartilage element" EXACT []
"cartilage organ" EXACT [FMA:55107]
"chondrogenic element" EXACT [VSAO:0000000]
Comments:AO notes: TAO still mixes tissue and element
Subset: organ_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004765(skeletal element)
develops_from:UBERON:0005863(cartilaginous condensation)



Children

is a:UBERON:0010885 (hindlimb cartilage element),UBERON:0011135 (intervertebral cartilage)
develops from:UBERON:0002513 (endochondral bone)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007844 (cartilaginous element), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.25e-162FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_4c2ec95e9e84c55dda77da68ef4c880ap@chr3:174737010..174737023, +
1.25e-162FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_4c2ec95e9e84c55dda77da68ef4c880ap@chr3:174737010..174737023, +
3.92e-140FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_2bcd42168fce003e0c3bfaa6a5bb6df9p4@PAX1
3.92e-140FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_2bcd42168fce003e0c3bfaa6a5bb6df9p4@PAX1
4.22e-99FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_fd5dff9fc10af0bf3d0c8b68c715e4f1p@chr5:30104176..30104187, -
4.22e-99FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_fd5dff9fc10af0bf3d0c8b68c715e4f1p@chr5:30104176..30104187, -
1.06e-78FFCP PHASE2:Hg19::chr4:13546130..13546145,-#_2f6e0293416017a5443f80dff78fa286p4@NKX3-2
1.06e-78FFCP PHASE1:Hg19::chr4:13546130..13546145,-#_2f6e0293416017a5443f80dff78fa286p4@NKX3-2
2.52e-71FFCP PHASE2:Hg19::chr9:114135497..114135526,-#_d19b58e7be1089708ddd9fd9521566f8p@chr9:114135497..114135526, -
2.52e-71FFCP PHASE1:Hg19::chr9:114135497..114135526,-#_d19b58e7be1089708ddd9fd9521566f8p@chr9:114135497..114135526, -
7.4e-71FFCP PHASE2:Hg19::chr2:241897125..241897142,-#_1085d47587e78793ff475e326323bef9p@chr2:241897125..241897142, -
7.4e-71FFCP PHASE1:Hg19::chr2:241897125..241897142,-#_1085d47587e78793ff475e326323bef9p@chr2:241897125..241897142, -
6.33e-70FFCP PHASE2:Hg19::chr3:80727046..80727051,-#_b5091c4bd812e811e14386a7d2c57d21p@chr3:80727046..80727051, -
6.33e-70FFCP PHASE1:Hg19::chr3:80727046..80727051,-#_b5091c4bd812e811e14386a7d2c57d21p@chr3:80727046..80727051, -
4.8e-67FFCP PHASE1:Hg19::chr2:242004292..242004308,+#_a3a7139287be106b64f4ec62bb851edfp15@SNED1
4.8e-67FFCP PHASE2:Hg19::chr2:242004292..242004308,+#_a3a7139287be106b64f4ec62bb851edfp15@SNED1
1.24e-66FFCP PHASE2:Hg19::chr1:19811132..19811155,-#_998ac72978b4baa8872cc7c59c374146p20@CAPZB
1.24e-66FFCP PHASE1:Hg19::chr1:19811132..19811155,-#_998ac72978b4baa8872cc7c59c374146p20@CAPZB
1.26e-62FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_bfc61f0cd11532feaf31c297902f0968p@chr1:19778678..19778689, -
1.26e-62FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_bfc61f0cd11532feaf31c297902f0968p@chr1:19778678..19778689, -
1.1e-59FFCP PHASE2:Hg19::chr2:241897189..241897221,-#_5c4b8d25b6890a8dde141ba731b30434p@chr2:241897189..241897221, -
1.1e-59FFCP PHASE1:Hg19::chr2:241897189..241897221,-#_5c4b8d25b6890a8dde141ba731b30434p@chr2:241897189..241897221, -
1.55e-57FFCP PHASE1:Hg19::chr14:23574186..23574212,-#_22bd8fa31552c05234366680f4737081p1@uc010aki.1
1.55e-57FFCP PHASE2:Hg19::chr14:23574186..23574212,-#_22bd8fa31552c05234366680f4737081p1@uc010aki.1
4.09e-56FFCP PHASE2:Hg19::chr14:61190754..61190776,-#_9c47f71ab4cfc289468a0d667ba1c70ap6@SIX4
4.09e-56FFCP PHASE1:Hg19::chr14:61190754..61190776,-#_9c47f71ab4cfc289468a0d667ba1c70ap6@SIX4
3.74e-53FFCP PHASE2:Hg19::chr14:23574164..23574179,-#_17559775f72490a9bc3a85dc1c9123cbp3@uc010aki.1
3.74e-53FFCP PHASE1:Hg19::chr14:23574164..23574179,-#_17559775f72490a9bc3a85dc1c9123cbp3@uc010aki.1
1.15e-51FFCP PHASE2:Hg19::chr20:21687260..21687270,+#_9a5f3e08834cb921953aa9848af9c624p3@PAX1
1.15e-51FFCP PHASE1:Hg19::chr20:21687260..21687270,+#_9a5f3e08834cb921953aa9848af9c624p3@PAX1
2.3e-51FFCP PHASE1:Hg19::chr10:81923378..81923389,-#_a4c57be1c957f38d862b316c10d6531bp@chr10:81923378..81923389, -
2.3e-51FFCP PHASE2:Hg19::chr10:81923378..81923389,-#_a4c57be1c957f38d862b316c10d6531bp@chr10:81923378..81923389, -
3.24e-51FFCP PHASE1:Hg19::chr2:12248310..12248334,-#_1bb76e95ce2ff62869448879cc6723bcp@chr2:12248310..12248334, -
3.24e-51FFCP PHASE2:Hg19::chr2:12248310..12248334,-#_1bb76e95ce2ff62869448879cc6723bcp@chr2:12248310..12248334, -
8.0e-51FFCP PHASE1:Hg19::chr7:18832913..18832946,+#_10404810aa853646fd63d699e5ddc18bp19@HDAC9
8.0e-51FFCP PHASE2:Hg19::chr7:18832913..18832946,+#_10404810aa853646fd63d699e5ddc18bp19@HDAC9
3.4e-49FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_1d5fecb23c075fab671abbf093a957cep26@Myo18a
3.4e-49FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_1d5fecb23c075fab671abbf093a957cep26@Myo18a
4.96e-49FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_05ef4c2858912242e5c1155001b6f636p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_05ef4c2858912242e5c1155001b6f636p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_05ef4c2858912242e5c1155001b6f636p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_05ef4c2858912242e5c1155001b6f636p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_05ef4c2858912242e5c1155001b6f636p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_05ef4c2858912242e5c1155001b6f636p@chr9:21934585..21934591, -
5.06e-49FFCP PHASE2:Hg19::chr7:158224707..158224729,-#_ba45d1d5326330a3c4c5725b030bdc49p@chr7:158224707..158224729, -
5.06e-49FFCP PHASE1:Hg19::chr7:158224707..158224729,-#_ba45d1d5326330a3c4c5725b030bdc49p@chr7:158224707..158224729, -
5.24e-48FFCP PHASE2:Hg19::chr1:65888177..65888194,+#_c52f380569069fcdb00e5012ded1d0b0p@chr1:65888177..65888194, +
5.24e-48FFCP PHASE1:Hg19::chr1:65888177..65888194,+#_c52f380569069fcdb00e5012ded1d0b0p@chr1:65888177..65888194, +
2.98e-45FFCP PHASE2:Hg19::chr4:13546583..13546593,-#_c08288d34cdbf769ff708a98e027466ap3@NKX3-2
2.98e-45FFCP PHASE1:Hg19::chr4:13546583..13546593,-#_c08288d34cdbf769ff708a98e027466ap3@NKX3-2
2.92e-44FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_ce5020629f0d96ab70fdc009d9120d83p1@MGC27382
2.92e-44FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_ce5020629f0d96ab70fdc009d9120d83p1@MGC27382
3.15e-44FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_bbe3e90256ab4e53ec43b8f42cd9a0a0p@chr6:51525810..51525817, +
3.15e-44FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_bbe3e90256ab4e53ec43b8f42cd9a0a0p@chr6:51525810..51525817, +
1.71e-43FFCP PHASE1:Hg19::chr7:18832834..18832859,+#_e22cb3939371f88af1ab6e1a9a0d5d1dp18@HDAC9
1.71e-43FFCP PHASE2:Hg19::chr7:18832834..18832859,+#_e22cb3939371f88af1ab6e1a9a0d5d1dp18@HDAC9
1.48e-40FFCP PHASE1:Hg19::chr13:24914614..24914622,-#_058a144febb4026906076a760e3ce106p@chr13:24914614..24914622, -
1.48e-40FFCP PHASE1:Hg19::chr9:33028063..33028067,-#_058a144febb4026906076a760e3ce106p@chr9:33028063..33028067, -
1.48e-40FFCP PHASE2:Hg19::chr13:24914614..24914622,-#_058a144febb4026906076a760e3ce106p@chr13:24914614..24914622, -
1.48e-40FFCP PHASE2:Hg19::chr9:33028063..33028067,-#_058a144febb4026906076a760e3ce106p@chr9:33028063..33028067, -
1.64e-40FFCP PHASE1:Hg19::chr20:21686317..21686350,+#_da0c6a975d9214793dd53ba681a02c19p1@PAX1
1.64e-40FFCP PHASE2:Hg19::chr20:21686317..21686350,+#_da0c6a975d9214793dd53ba681a02c19p1@PAX1
1.81e-40FFCP PHASE1:Hg19::chr1:78769549..78769554,+#_9e3df8ed69efe7060816350a0c07a968p5@PTGFR
1.81e-40FFCP PHASE2:Hg19::chr1:78769549..78769554,+#_9e3df8ed69efe7060816350a0c07a968p5@PTGFR
2.13e-40FFCP PHASE1:Hg19::chr2:241897363..241897398,+#_4763b75d9a6cea458a4f8d2af5e47ae1p@chr2:241897363..241897398, +
2.13e-40FFCP PHASE2:Hg19::chr2:241897363..241897398,+#_4763b75d9a6cea458a4f8d2af5e47ae1p@chr2:241897363..241897398, +
9.78e-40FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_6c0a116655cc893ea837b3986089f019p@chr19:4876870..4876880, -
9.78e-40FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_6c0a116655cc893ea837b3986089f019p@chr19:4876870..4876880, -
1.15e-39FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_9b27e08b1688b4a32bc67b187fe3a31cp@chr1:174140324..174140335, -
1.15e-39FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_9b27e08b1688b4a32bc67b187fe3a31cp@chr16:24096441..24096449, +
1.15e-39FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_9b27e08b1688b4a32bc67b187fe3a31cp@chr16:24096441..24096449, +
1.15e-39FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_9b27e08b1688b4a32bc67b187fe3a31cp@chr6:4490674..4490679, +
1.15e-39FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_9b27e08b1688b4a32bc67b187fe3a31cp@chr11:67063327..67063335, +
1.15e-39FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_9b27e08b1688b4a32bc67b187fe3a31cp@chr1:174140324..174140335, -
1.15e-39FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_9b27e08b1688b4a32bc67b187fe3a31cp@chr11:67063327..67063335, +
1.15e-39FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_9b27e08b1688b4a32bc67b187fe3a31cp@chr6:4490674..4490679, +
1.55e-39FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_1d57c2e8f5a65e838f28b87d695aac08p@chr1:174143249..174143260, -
1.55e-39FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_1d57c2e8f5a65e838f28b87d695aac08p@chr1:174143249..174143260, -
3.03e-39FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_bb833e7537797c189aaa792cb8a76ca2p@chr6:51525869..51525891, +
3.03e-39FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_bb833e7537797c189aaa792cb8a76ca2p@chr6:51525869..51525891, +
3.04e-39FFCP PHASE1:Hg19::chr20:21686290..21686311,+#_42cad67c6dc24a307f674808e359188cp2@PAX1
3.04e-39FFCP PHASE2:Hg19::chr20:21686290..21686311,+#_42cad67c6dc24a307f674808e359188cp2@PAX1
7.19e-39FFCP PHASE2:Hg19::chr7:18832759..18832786,+#_76ab97e2fa2db8ece03e356d9280d60ap16@HDAC9
7.19e-39FFCP PHASE2:Hg19::chr5:140887761..140887777,+#_76ab97e2fa2db8ece03e356d9280d60ap@chr5:140887761..140887777, +
7.19e-39FFCP PHASE1:Hg19::chr7:18832759..18832786,+#_76ab97e2fa2db8ece03e356d9280d60ap16@HDAC9
7.19e-39FFCP PHASE1:Hg19::chr5:140887761..140887777,+#_76ab97e2fa2db8ece03e356d9280d60ap@chr5:140887761..140887777, +
9.31e-39FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_d701314b31332efd21b17fcdcca9f59cp3@Asb16
9.31e-39FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_d701314b31332efd21b17fcdcca9f59cp3@Asb16
1.24e-38FFCP PHASE2:Hg19::chr4:77068930..77068959,-#_cc9ca7c5c9adbed141ad405d45a632f2p4@NUP54
1.24e-38FFCP PHASE1:Hg19::chr4:77068930..77068959,-#_cc9ca7c5c9adbed141ad405d45a632f2p4@NUP54
2.08e-38FFCP PHASE2:Hg19::chr2:241938405..241938416,+#_9cd110c464013aa1ea12b1bc632f89b8p@chr2:241938405..241938416, +
2.08e-38FFCP PHASE1:Hg19::chr2:241938405..241938416,+#_9cd110c464013aa1ea12b1bc632f89b8p@chr2:241938405..241938416, +
3.34e-38FFCP PHASE1:Hg19::chr4:13546632..13546662,-#_4f6a0bd45e15799bf83e186978dbad9ep1@NKX3-2
3.34e-38FFCP PHASE2:Hg19::chr4:13546632..13546662,-#_4f6a0bd45e15799bf83e186978dbad9ep1@NKX3-2
3.68e-38FFCP PHASE2:Hg19::chr6:158490457..158490470,+#_448f43ad005308ff7155454ff4be04d2p10@SYNJ2
3.68e-38FFCP PHASE1:Hg19::chr6:158490457..158490470,+#_448f43ad005308ff7155454ff4be04d2p10@SYNJ2
5.39e-38FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_7148c5b1faccd8d10998afd1fa925130p@chr9:16138889..16138902, -
5.39e-38FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_7148c5b1faccd8d10998afd1fa925130p@chr9:16138889..16138902, -
8.66e-38FFCP PHASE1:Hg19::chr8:78311303..78311320,+#_88e51ba5d296fda1351978db32fbee65p2@ENST00000518706
8.66e-38FFCP PHASE2:Hg19::chr8:78311303..78311320,+#_88e51ba5d296fda1351978db32fbee65p2@ENST00000518706

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0007844&oldid=3274600"