UBERON:0005290: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment=the terms metencephalon and myelencephalon are only meaningful in mammals and birds - Neuroanatomy of the Zebrafish Brain. Note that its not clear if this refers to the developing medulla oblongata - MA (adult) has two distinct classes | |comment=the terms metencephalon and myelencephalon are only meaningful in mammals and birds - Neuroanatomy of the Zebrafish Brain. Note that its not clear if this refers to the developing medulla oblongata - MA (adult) has two distinct classes | ||
|created_by= | |created_by= | ||
| | |def="The posterior part of the developing vertebrate hindbrain or the corresponding part of the adult brain composed of the medulla oblongata and a portion of the fourth ventricle; as well as the glossopharyngeal nerve (CN IX), vagus nerve (CN X), accessory nerve (CN XI), hypoglossal nerve (CN XII), and a portion of the vestibulocochlear nerve (CN VIII).[BTO,WP]." [BTO:0000758, Wikipedia:Myelencephalon] | ||
|derives_from= | |derives_from= | ||
|develops_from=UBERON:0010096 | |develops_from=UBERON:0010096 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0005290 | |||
|is_a=UBERON:0004733 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=myelencephalon | |||
|namespace= | |||
|obo_creation_date= | |||
|part_of=UBERON:0002028 | |part_of=UBERON:0002028 | ||
|preceded_by= | |||
|property_value="dubious_for_taxon" NCBITaxon:7955;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value="dubious_for_taxon" NCBITaxon:7955;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset=uberon_slim | ||
| | |synonym= | ||
|union_of= | |||
|xref=BTO:0000758;;EHDAA2:0001207;;EHDAA:5526;;EMAPA:17082;;http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/5/54/EmbryonicBrain.svg/200px-EmbryonicBrain.svg.png;;MA:0000205;;VHOG:0000456 | |||
}} | }} | ||
Revision as of 11:35, 12 September 2014
| Name: | myelencephalon | ||
|---|---|---|---|
| Definition: | "The posterior part of the developing vertebrate hindbrain or the corresponding part of the adult brain composed of the medulla oblongata and a portion of the fourth ventricle; as well as the glossopharyngeal nerve (CN IX), vagus nerve (CN X), accessory nerve (CN XI), hypoglossal nerve (CN XII), and a portion of the vestibulocochlear nerve (CN VIII).[BTO,WP]." [BTO:0000758, Wikipedia:Myelencephalon] | ||
| Xrefs: |
| ||
| Comments: | the terms metencephalon and myelencephalon are only meaningful in mammals and birds - Neuroanatomy of the Zebrafish Brain. Note that its not clear if this refers to the developing medulla oblongata - MA (adult) has two distinct classes | ||
| Subset: | uberon_slim |
200px-EmbryonicBrain.svg.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004733(segmental subdivision of hindbrain) |
|---|---|
| develops_from: | UBERON:0010096(future myelencephalon) |
| part_of: | UBERON:0002028(hindbrain) |
Children
| part of: | UBERON:0001896 (medulla oblongata) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10038-101F2 (medulla oblongata, adult, pool1)
- 10155-103A2 (medulla oblongata, adult, donor10252)
- 10174-103C3 (medulla oblongata - adult, donor10196)
- 10361-105F1 (medulla oblongata, newborn, donor10223)
- 1396-42A3 (medulla oblongata, neonate N30)
- 17-12C2 (medulla oblongata, adult)
Mouse (Mus musculus)
- 10038-101F2 (medulla oblongata, adult, pool1)
- 10155-103A2 (medulla oblongata, adult, donor10252)
- 10174-103C3 (medulla oblongata - adult, donor10196)
- 10361-105F1 (medulla oblongata, newborn, donor10223)
- 1396-42A3 (medulla oblongata, neonate N30)
- 17-12C2 (medulla oblongata, adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005290 (myelencephalon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 8.98e-131 | FFCP PHASE1:Hg19::chr12:44467410..44467418,+#_c356ba0b25e7a1bcc832ca0b35834fd3 | p13@TMEM117 |
| 8.98e-131 | FFCP PHASE1:Hg19::chr5:35090318..35090324,-#_c356ba0b25e7a1bcc832ca0b35834fd3 | p@chr5:35090318..35090324, - |
| 8.98e-131 | FFCP PHASE2:Hg19::chr2:8851401..8851408,+#_c356ba0b25e7a1bcc832ca0b35834fd3 | p@chr2:8851401..8851408, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr5:35090318..35090324,-#_c356ba0b25e7a1bcc832ca0b35834fd3 | p@chr5:35090318..35090324, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr5:35090057..35090065,-#_c356ba0b25e7a1bcc832ca0b35834fd3 | p27@PRLR |
| 8.98e-131 | FFCP PHASE1:Hg19::chr6:132580699..132580702,+#_c356ba0b25e7a1bcc832ca0b35834fd3 | p@chr6:132580699..132580702, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr5:35090057..35090065,-#_c356ba0b25e7a1bcc832ca0b35834fd3 | p27@PRLR |
| 8.98e-131 | FFCP PHASE2:Hg19::chr6:132580699..132580702,+#_c356ba0b25e7a1bcc832ca0b35834fd3 | p@chr6:132580699..132580702, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr12:44467410..44467418,+#_c356ba0b25e7a1bcc832ca0b35834fd3 | p13@TMEM117 |
| 8.98e-131 | FFCP PHASE1:Hg19::chr2:8851401..8851408,+#_c356ba0b25e7a1bcc832ca0b35834fd3 | p@chr2:8851401..8851408, + |
| 5.2e-118 | FFCP PHASE1:Hg19::chr11:114146042..114146050,-#_930d92965e4d5335a8d2e3c800cbdf1d | p@chr11:114146042..114146050, - |
| 5.2e-118 | FFCP PHASE2:Hg19::chr11:114146042..114146050,-#_930d92965e4d5335a8d2e3c800cbdf1d | p@chr11:114146042..114146050, - |
| 5.2e-118 | FFCP PHASE1:Hg19::chr8:12803146..12803155,+#_930d92965e4d5335a8d2e3c800cbdf1d | p17@KIAA1456 |
| 5.2e-118 | FFCP PHASE2:Hg19::chr8:12803146..12803155,+#_930d92965e4d5335a8d2e3c800cbdf1d | p17@KIAA1456 |
| 5.69e-99 | FFCP PHASE1:Hg19::chr7:129015906..129015915,+#_59f7728759861dfa488f6c3d05791869 | p@chr7:129015906..129015915, + |
| 5.69e-99 | FFCP PHASE2:Hg19::chr7:129015906..129015915,+#_59f7728759861dfa488f6c3d05791869 | p@chr7:129015906..129015915, + |
| 5.69e-99 | FFCP PHASE1:Hg19::chr5:35090259..35090267,-#_59f7728759861dfa488f6c3d05791869 | p12@PRLR |
| 5.69e-99 | FFCP PHASE2:Hg19::chr5:35090259..35090267,-#_59f7728759861dfa488f6c3d05791869 | p12@PRLR |
| 7.95e-99 | FFCP PHASE1:Hg19::chr7:129027894..129027906,+#_6110de3067f7b86e1feee04141435711 | p16@AHCYL2 |
| 7.95e-99 | FFCP PHASE2:Hg19::chr7:129027894..129027906,+#_6110de3067f7b86e1feee04141435711 | p16@AHCYL2 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:37561236..37561245,+#_9843d49bec16649a632c469842ac713d | p@chr8:37561236..37561245, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:37561236..37561245,+#_9843d49bec16649a632c469842ac713d | p@chr8:37561236..37561245, + |
| 6.24e-88 | FFCP PHASE1:Hg19::chr7:129012882..129012891,-#_6bebf02ee4f5c0b7643e522c1f6740d0 | p@chr7:129012882..129012891, - |
| 6.24e-88 | FFCP PHASE2:Hg19::chr11:119216846..119216857,-#_6bebf02ee4f5c0b7643e522c1f6740d0 | p@chr11:119216846..119216857, - |
| 6.24e-88 | FFCP PHASE2:Hg19::chr5:35089832..35089839,-#_6bebf02ee4f5c0b7643e522c1f6740d0 | p26@PRLR |
| 6.24e-88 | FFCP PHASE1:Hg19::chr15:40492238..40492270,+#_6bebf02ee4f5c0b7643e522c1f6740d0 | p8@BUB1B |
| 6.24e-88 | FFCP PHASE2:Hg19::chr7:129012882..129012891,-#_6bebf02ee4f5c0b7643e522c1f6740d0 | p@chr7:129012882..129012891, - |
| 6.24e-88 | FFCP PHASE2:Hg19::chr12:20951599..20951604,+#_6bebf02ee4f5c0b7643e522c1f6740d0 | p@chr12:20951599..20951604, + |
| 6.24e-88 | FFCP PHASE1:Hg19::chr7:129015806..129015815,+#_6bebf02ee4f5c0b7643e522c1f6740d0 | p@chr7:129015806..129015815, + |
| 6.24e-88 | FFCP PHASE2:Hg19::chr7:129015806..129015815,+#_6bebf02ee4f5c0b7643e522c1f6740d0 | p@chr7:129015806..129015815, + |
| 6.24e-88 | FFCP PHASE1:Hg19::chr12:20951599..20951604,+#_6bebf02ee4f5c0b7643e522c1f6740d0 | p@chr12:20951599..20951604, + |
| 6.24e-88 | FFCP PHASE2:Hg19::chr12:44467399..44467407,+#_6bebf02ee4f5c0b7643e522c1f6740d0 | p12@TMEM117 |
| 6.24e-88 | FFCP PHASE2:Hg19::chr15:40492238..40492270,+#_6bebf02ee4f5c0b7643e522c1f6740d0 | p8@BUB1B |
| 6.24e-88 | FFCP PHASE1:Hg19::chr5:35089799..35089804,-#_6bebf02ee4f5c0b7643e522c1f6740d0 | p20@PRLR |
| 6.24e-88 | FFCP PHASE2:Hg19::chr12:129304411..129304414,-#_6bebf02ee4f5c0b7643e522c1f6740d0 | p11@SLC15A4 |
| 6.24e-88 | FFCP PHASE1:Hg19::chr12:44467399..44467407,+#_6bebf02ee4f5c0b7643e522c1f6740d0 | p12@TMEM117 |
| 6.24e-88 | FFCP PHASE2:Hg19::chr5:35089799..35089804,-#_6bebf02ee4f5c0b7643e522c1f6740d0 | p20@PRLR |
| 6.24e-88 | FFCP PHASE1:Hg19::chr11:119216846..119216857,-#_6bebf02ee4f5c0b7643e522c1f6740d0 | p@chr11:119216846..119216857, - |
| 6.24e-88 | FFCP PHASE1:Hg19::chr12:129304411..129304414,-#_6bebf02ee4f5c0b7643e522c1f6740d0 | p11@SLC15A4 |
| 6.24e-88 | FFCP PHASE1:Hg19::chr5:35089832..35089839,-#_6bebf02ee4f5c0b7643e522c1f6740d0 | p26@PRLR |
| 9.74e-88 | FFCP PHASE2:Hg19::chr18:29172879..29172882,+#_88f5d7cce7b16745d120c6ebe31aedcb | p5@TTR |
| 9.74e-88 | FFCP PHASE1:Hg19::chr8:12803139..12803144,+#_88f5d7cce7b16745d120c6ebe31aedcb | p23@KIAA1456 |
| 9.74e-88 | FFCP PHASE1:Hg19::chr5:33514132..33514156,+#_88f5d7cce7b16745d120c6ebe31aedcb | p@chr5:33514132..33514156, + |
| 9.74e-88 | FFCP PHASE1:Hg19::chr18:29172879..29172882,+#_88f5d7cce7b16745d120c6ebe31aedcb | p5@TTR |
| 9.74e-88 | FFCP PHASE2:Hg19::chr5:33514132..33514156,+#_88f5d7cce7b16745d120c6ebe31aedcb | p@chr5:33514132..33514156, + |
| 9.74e-88 | FFCP PHASE2:Hg19::chr11:71869850..71869861,+#_88f5d7cce7b16745d120c6ebe31aedcb | p1@ENST00000544535 |
| 9.74e-88 | FFCP PHASE2:Hg19::chr8:12803139..12803144,+#_88f5d7cce7b16745d120c6ebe31aedcb | p23@KIAA1456 |
| 9.74e-88 | FFCP PHASE1:Hg19::chr11:71869850..71869861,+#_88f5d7cce7b16745d120c6ebe31aedcb | p1@ENST00000544535 |
| 1.52e-87 | FFCP PHASE1:Hg19::chr10:73479518..73479527,-#_0d88a681a319ada6c7d43ef95056ae0d | p5@C10orf105 |
| 1.52e-87 | FFCP PHASE1:Hg19::chr5:126959224..126959239,+#_0d88a681a319ada6c7d43ef95056ae0d | p@chr5:126959224..126959239, + |
| 1.52e-87 | FFCP PHASE2:Hg19::chr16:49670005..49670020,-#_0d88a681a319ada6c7d43ef95056ae0d | p@chr16:49670005..49670020, - |
| 1.52e-87 | FFCP PHASE2:Hg19::chr10:73479518..73479527,-#_0d88a681a319ada6c7d43ef95056ae0d | p5@C10orf105 |
| 1.52e-87 | FFCP PHASE2:Hg19::chr5:126959224..126959239,+#_0d88a681a319ada6c7d43ef95056ae0d | p@chr5:126959224..126959239, + |
| 1.52e-87 | FFCP PHASE1:Hg19::chr11:111191106..111191110,+#_0d88a681a319ada6c7d43ef95056ae0d | p@chr11:111191106..111191110, + |
| 1.52e-87 | FFCP PHASE1:Hg19::chr16:49670005..49670020,-#_0d88a681a319ada6c7d43ef95056ae0d | p@chr16:49670005..49670020, - |
| 1.52e-87 | FFCP PHASE2:Hg19::chr11:111191106..111191110,+#_0d88a681a319ada6c7d43ef95056ae0d | p@chr11:111191106..111191110, + |
| 5.41e-85 | FFCP PHASE1:Hg19::chr2:69741832..69741847,-#_352b69ffa04e5eebe1aeba315eb4ee1f | p@chr2:69741832..69741847, - |
| 5.41e-85 | FFCP PHASE2:Hg19::chr2:69741832..69741847,-#_352b69ffa04e5eebe1aeba315eb4ee1f | p@chr2:69741832..69741847, - |
| 5.41e-85 | FFCP PHASE1:Hg19::chr10:73479546..73479553,-#_352b69ffa04e5eebe1aeba315eb4ee1f | p4@C10orf105 |
| 5.41e-85 | FFCP PHASE2:Hg19::chr10:73479546..73479553,-#_352b69ffa04e5eebe1aeba315eb4ee1f | p4@C10orf105 |
| 7.21e-85 | FFCP PHASE1:Hg19::chr5:150050170..150050182,+#_be4836a8addce356f8e517bd69a3ae53 | p@chr5:150050170..150050182, + |
| 7.21e-85 | FFCP PHASE2:Hg19::chr5:150050170..150050182,+#_be4836a8addce356f8e517bd69a3ae53 | p@chr5:150050170..150050182, + |
| 2.27e-84 | FFCP PHASE2:Hg19::chr15:99666457..99666462,+#_4fc991c20ede230eac5df8dc6d8a7a86 | p@chr15:99666457..99666462, + |
| 2.27e-84 | FFCP PHASE1:Hg19::chr15:99666457..99666462,+#_4fc991c20ede230eac5df8dc6d8a7a86 | p@chr15:99666457..99666462, + |
| 3.03e-84 | FFCP PHASE2:Hg19::chr17:42993851..42993858,-#_aafb9ae797c27641f42feba0cdbb0c07 | p@chr17:42993851..42993858, - |
| 3.03e-84 | FFCP PHASE1:Hg19::chr17:42993851..42993858,-#_aafb9ae797c27641f42feba0cdbb0c07 | p@chr17:42993851..42993858, - |
| 4.03e-84 | FFCP PHASE2:Hg19::chr17:65489258..65489261,-#_95688d020c318aeec09b12e2adc32f17 | p@chr17:65489258..65489261, - |
| 4.03e-84 | FFCP PHASE1:Hg19::chr17:65489258..65489261,-#_95688d020c318aeec09b12e2adc32f17 | p@chr17:65489258..65489261, - |
| 1.66e-74 | FFCP PHASE2:Hg19::chr10:18242120..18242136,+#_f7abed2d9a0275b103aa26215cc05ee9 | p4@SLC39A12 |
| 1.66e-74 | FFCP PHASE1:Hg19::chr10:18242120..18242136,+#_f7abed2d9a0275b103aa26215cc05ee9 | p4@SLC39A12 |
| 2.14e-74 | FFCP PHASE2:Hg19::chr12:47779637..47779662,-#_de0815caeda648424d62ffc6662b3883 | p@chr12:47779637..47779662, - |
| 2.14e-74 | FFCP PHASE1:Hg19::chr12:47779637..47779662,-#_de0815caeda648424d62ffc6662b3883 | p@chr12:47779637..47779662, - |
| 2.14e-74 | FFCP PHASE1:Hg19::chr9:128998376..128998387,-#_de0815caeda648424d62ffc6662b3883 | p@chr9:128998376..128998387, - |
| 2.14e-74 | FFCP PHASE2:Hg19::chr9:128998376..128998387,-#_de0815caeda648424d62ffc6662b3883 | p@chr9:128998376..128998387, - |
| 7.51e-74 | FFCP PHASE2:Hg19::chr6:151054854..151054865,+#_4c7691958e705f5e8f7b6897d7ae4130 | p17@PLEKHG1 |
| 7.51e-74 | FFCP PHASE1:Hg19::chr6:151054854..151054865,+#_4c7691958e705f5e8f7b6897d7ae4130 | p17@PLEKHG1 |
| 9.82e-67 | FFCP PHASE1:Hg19::chr7:129015671..129015685,+#_142862fa4faf872dd86a0d6edc4efd0a | p11@AHCYL2 |
| 9.82e-67 | FFCP PHASE1:Hg19::chr5:35089843..35089860,-#_142862fa4faf872dd86a0d6edc4efd0a | p7@PRLR |
| 9.82e-67 | FFCP PHASE2:Hg19::chr7:129015671..129015685,+#_142862fa4faf872dd86a0d6edc4efd0a | p11@AHCYL2 |
| 9.82e-67 | FFCP PHASE2:Hg19::chr5:35089843..35089860,-#_142862fa4faf872dd86a0d6edc4efd0a | p7@PRLR |
| 1.71e-66 | FFCP PHASE1:Hg19::chr9:20927844..20927855,+#_0e49b837d581d608b64b84632dd5fba9 | p@chr9:20927844..20927855, + |
| 1.71e-66 | FFCP PHASE2:Hg19::chr9:20927844..20927855,+#_0e49b837d581d608b64b84632dd5fba9 | p@chr9:20927844..20927855, + |
| 1.92e-66 | FFCP PHASE1:Hg19::chr11:20621148..20621166,+#_dc68046df81859f1b143b76aebffa6e0 | p1@SLC6A5 |
| 1.92e-66 | FFCP PHASE2:Hg19::chr11:20621148..20621166,+#_dc68046df81859f1b143b76aebffa6e0 | p1@SLC6A5 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr7:129015616..129015619,+#_4ea94e99de2bb4a38c23d944329c0268 | p38@AHCYL2 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr9:5954514..5954521,-#_4ea94e99de2bb4a38c23d944329c0268 | p18@KIAA2026 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr7:129015511..129015519,+#_4ea94e99de2bb4a38c23d944329c0268 | p30@AHCYL2 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr9:5954514..5954521,-#_4ea94e99de2bb4a38c23d944329c0268 | p18@KIAA2026 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr7:129015511..129015519,+#_4ea94e99de2bb4a38c23d944329c0268 | p30@AHCYL2 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr7:129015616..129015619,+#_4ea94e99de2bb4a38c23d944329c0268 | p38@AHCYL2 |
| 2.4e-66 | FFCP PHASE1:Hg19::chr3:59750150..59750155,-#_b4f6ed56a8a1d0b8a5605688d981931a | p@chr3:59750150..59750155, - |
| 2.4e-66 | FFCP PHASE2:Hg19::chr3:59750150..59750155,-#_b4f6ed56a8a1d0b8a5605688d981931a | p@chr3:59750150..59750155, - |
| 2.4e-66 | FFCP PHASE1:Hg19::chr7:150529074..150529076,+#_b4f6ed56a8a1d0b8a5605688d981931a | p@chr7:150529074..150529076, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr7:150529074..150529076,+#_b4f6ed56a8a1d0b8a5605688d981931a | p@chr7:150529074..150529076, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr17:48913152..48913158,+#_b4f6ed56a8a1d0b8a5605688d981931a | p9@WFIKKN2 |
| 2.4e-66 | FFCP PHASE1:Hg19::chr17:48913152..48913158,+#_b4f6ed56a8a1d0b8a5605688d981931a | p9@WFIKKN2 |
| 2.41e-66 | FFCP PHASE1:Hg19::chr10:97236225..97236232,-#_b91b7504c9eb6307e8cea6fdc73c1d55 | p@chr10:97236225..97236232, - |
| 2.41e-66 | FFCP PHASE2:Hg19::chr10:97236225..97236232,-#_b91b7504c9eb6307e8cea6fdc73c1d55 | p@chr10:97236225..97236232, - |
| 3.35e-66 | FFCP PHASE1:Hg19::chr3:125997081..125997085,+#_8687afae4c4d3af30a943b3e92797d3f | p@chr3:125997081..125997085, + |
| 3.35e-66 | FFCP PHASE2:Hg19::chr3:125997081..125997085,+#_8687afae4c4d3af30a943b3e92797d3f | p@chr3:125997081..125997085, + |
