Personal tools

UBERON:0004875: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0004875
|alt_id=
|name=nephrogenic cord
|namespace=
|def="a portion of the urogenital ridge which is the source of much of the urinary system[WP]." [Wikipedia:Nephrogenic_cord]
|xref=FMA:72168;;ncithesaurus:Nephrogenic_Cord;;SCTID:361405003
|is_a=UBERON:0005423
|synonym="chorda nephrogenica" RELATED LATIN [Wikipedia:Nephrogenic_cord]
|comment=part_of or develops_from urogenital ridge?
|comment=part_of or develops_from urogenital ridge?
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="a portion of the urogenital ridge which is the source of much of the urinary system[WP]." [Wikipedia:Nephrogenic_cord]
|subset=
|derives_from=
|derives_from=
|develops_from=UBERON:0004876
|develops_from=UBERON:0004876
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004875
|is_a=UBERON:0005423
|is_obsolete=
|located_in=
|located_in=
|name=nephrogenic cord
|namespace=
|obo_creation_date=
|part_of=UBERON:0000922
|part_of=UBERON:0000922
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="chorda nephrogenica" RELATED LATIN [Wikipedia:Nephrogenic_cord]
|union_of=
|xref=FMA:72168;;ncithesaurus:Nephrogenic_Cord;;SCTID:361405003
}}
}}

Revision as of 11:32, 12 September 2014

Name:nephrogenic cord
Definition:"a portion of the urogenital ridge which is the source of much of the urinary system[WP]." [Wikipedia:Nephrogenic_cord]
Xrefs:
links:

FMA:72168
ncithesaurus:Nephrogenic_Cord

SCTID:361405003
Synonyms: "chorda nephrogenica" RELATED LATIN [Wikipedia:Nephrogenic_cord]
Comments:part_of or develops_from urogenital ridge?

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005423(developing anatomical structure)
develops_from:UBERON:0004876(urogenital ridge)
part_of:UBERON:0000922(embryo)



Children

part of:UBERON:0005754 (rostral part of nephrogenic cord)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004875 (nephrogenic cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.83e-65FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_3e74b05bcd4ae70139df9224d331bf42p4@Spink12
2.83e-65FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_3e74b05bcd4ae70139df9224d331bf42p4@Spink12
2.83e-65FFCP PHASE2:Mm9::chr14:63665679..63665688,+#_3e74b05bcd4ae70139df9224d331bf42p4@Defb42
2.83e-65FFCP PHASE2:Mm9::chr14:63585028..63585037,-#_3e74b05bcd4ae70139df9224d331bf42p@chr14:63585028..63585037, -
2.83e-65FFCP PHASE1:Mm9::chr14:63585028..63585037,-#_3e74b05bcd4ae70139df9224d331bf42p@chr14:63585028..63585037, -
2.83e-65FFCP PHASE1:Mm9::chr14:63665679..63665688,+#_3e74b05bcd4ae70139df9224d331bf42p4@Defb42
2.83e-65FFCP PHASE1:Mm9::chr10:127470655..127470664,+#_3e74b05bcd4ae70139df9224d331bf42p@chr10:127470655..127470664, +
2.83e-65FFCP PHASE2:Mm9::chr10:127470655..127470664,+#_3e74b05bcd4ae70139df9224d331bf42p@chr10:127470655..127470664, +
3.99e-50FFCP PHASE2:Mm9::chr2:152388713..152388729,+#_c356b2c847a515521a6fe753444b3a76p@chr2:152388713..152388729, +
3.99e-50FFCP PHASE1:Mm9::chr2:152388713..152388729,+#_c356b2c847a515521a6fe753444b3a76p@chr2:152388713..152388729, +
5.6e-50FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_a52ba957e8ad4186f4d8110f79d26ad7p@chr2:120409486..120409492, +
5.6e-50FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_a52ba957e8ad4186f4d8110f79d26ad7p@chr2:120409486..120409492, +
1.6e-49FFCP PHASE2:Mm9::chr11:105797641..105797656,-#_386211f7cdcce24144f83dd84ef487d5p4@Cyb561
1.6e-49FFCP PHASE2:Mm9::chr14:63585020..63585025,-#_386211f7cdcce24144f83dd84ef487d5p@chr14:63585020..63585025, -
1.6e-49FFCP PHASE1:Mm9::chr11:76361451..76361499,+#_386211f7cdcce24144f83dd84ef487d5p@chr11:76361451..76361499, +
1.6e-49FFCP PHASE1:Mm9::chr14:63585020..63585025,-#_386211f7cdcce24144f83dd84ef487d5p@chr14:63585020..63585025, -
1.6e-49FFCP PHASE2:Mm9::chr14:63585048..63585062,-#_386211f7cdcce24144f83dd84ef487d5p@chr14:63585048..63585062, -
1.6e-49FFCP PHASE2:Mm9::chr11:76361451..76361499,+#_386211f7cdcce24144f83dd84ef487d5p@chr11:76361451..76361499, +
1.6e-49FFCP PHASE2:Mm9::chr9:35597686..35597691,-#_386211f7cdcce24144f83dd84ef487d5p2@D730048I06Rik, p2@Gm17727
1.6e-49FFCP PHASE1:Mm9::chr9:35597686..35597691,-#_386211f7cdcce24144f83dd84ef487d5p2@D730048I06Rik, p2@Gm17727
1.6e-49FFCP PHASE1:Mm9::chr14:63585048..63585062,-#_386211f7cdcce24144f83dd84ef487d5p@chr14:63585048..63585062, -
1.6e-49FFCP PHASE1:Mm9::chr11:105797641..105797656,-#_386211f7cdcce24144f83dd84ef487d5p4@Cyb561
2.33e-49FFCP PHASE1:Mm9::chr14:51734043..51734054,+#_d9799cdb5d1792b54fa1fa8cc7d7483ap2@Eddm3b
2.33e-49FFCP PHASE2:Mm9::chr14:63627556..63627564,-#_d9799cdb5d1792b54fa1fa8cc7d7483ap@chr14:63627556..63627564, -
2.33e-49FFCP PHASE1:Mm9::chr9:26611246..26611253,-#_d9799cdb5d1792b54fa1fa8cc7d7483ap@chr9:26611246..26611253, -
2.33e-49FFCP PHASE1:Mm9::chr14:63627556..63627564,-#_d9799cdb5d1792b54fa1fa8cc7d7483ap@chr14:63627556..63627564, -
2.33e-49FFCP PHASE2:Mm9::chr9:26611246..26611253,-#_d9799cdb5d1792b54fa1fa8cc7d7483ap@chr9:26611246..26611253, -
2.33e-49FFCP PHASE2:Mm9::chr9:26732045..26732085,+#_d9799cdb5d1792b54fa1fa8cc7d7483ap@chr9:26732045..26732085, +
2.33e-49FFCP PHASE2:Mm9::chr14:51734043..51734054,+#_d9799cdb5d1792b54fa1fa8cc7d7483ap2@Eddm3b
2.33e-49FFCP PHASE1:Mm9::chr9:26732045..26732085,+#_d9799cdb5d1792b54fa1fa8cc7d7483ap@chr9:26732045..26732085, +
3.4e-49FFCP PHASE2:Mm9::chr2:69981027..69981032,+#_7e60dff3c96e89262e358066b0d5d3cap@chr2:69981027..69981032, +
3.4e-49FFCP PHASE1:Mm9::chr2:69981027..69981032,+#_7e60dff3c96e89262e358066b0d5d3cap@chr2:69981027..69981032, +
9.75e-45FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_121e7bbcf9d5f9174346c0dd1cd0f66ep10@PAX2
9.75e-45FFCP PHASE1:Hg19::chr1:172416185..172416189,-#_121e7bbcf9d5f9174346c0dd1cd0f66ep@chr1:172416185..172416189, -
9.75e-45FFCP PHASE2:Hg19::chr1:172416185..172416189,-#_121e7bbcf9d5f9174346c0dd1cd0f66ep@chr1:172416185..172416189, -
9.75e-45FFCP PHASE2:Hg19::chr14:68644730..68644737,+#_121e7bbcf9d5f9174346c0dd1cd0f66ep@chr14:68644730..68644737, +
9.75e-45FFCP PHASE1:Hg19::chr14:68644730..68644737,+#_121e7bbcf9d5f9174346c0dd1cd0f66ep@chr14:68644730..68644737, +
9.75e-45FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_121e7bbcf9d5f9174346c0dd1cd0f66ep10@PAX2
4.54e-44FFCP PHASE1:Mm9::chr10:85390145..85390153,+#_2c808356ccd804cd36d69a04f78b05bep@chr10:85390145..85390153, +
4.54e-44FFCP PHASE2:Mm9::chr2:75866210..75866235,+#_2c808356ccd804cd36d69a04f78b05bep@chr2:75866210..75866235, +
4.54e-44FFCP PHASE2:Mm9::chr7:151928014..151928021,+#_2c808356ccd804cd36d69a04f78b05bep@chr7:151928014..151928021, +
4.54e-44FFCP PHASE1:Mm9::chr4:123977104..123977120,-#_2c808356ccd804cd36d69a04f78b05bep1@ENSMUST00000139012, p1@uc008uqo.1
4.54e-44FFCP PHASE2:Mm9::chr14:103837894..103837900,+#_2c808356ccd804cd36d69a04f78b05bep@chr14:103837894..103837900, +
4.54e-44FFCP PHASE1:Mm9::chr14:51627586..51627595,+#_2c808356ccd804cd36d69a04f78b05bep4@Rnase10
4.54e-44FFCP PHASE2:Mm9::chr1:90155966..90155989,+#_2c808356ccd804cd36d69a04f78b05bep@chr1:90155966..90155989, +
4.54e-44FFCP PHASE2:Mm9::chr18:46301295..46301302,-#_2c808356ccd804cd36d69a04f78b05bep@chr18:46301295..46301302, -
4.54e-44FFCP PHASE2:Mm9::chr13:21379065..21379072,-#_2c808356ccd804cd36d69a04f78b05bep@chr13:21379065..21379072, -
4.54e-44FFCP PHASE1:Mm9::chr9:35585507..35585517,-#_2c808356ccd804cd36d69a04f78b05bep4@Gm17727
4.54e-44FFCP PHASE2:Mm9::chr5:31377177..31377184,+#_2c808356ccd804cd36d69a04f78b05bep@chr5:31377177..31377184, +
4.54e-44FFCP PHASE1:Mm9::chr1:39707572..39707583,+#_2c808356ccd804cd36d69a04f78b05bep@chr1:39707572..39707583, +
4.54e-44FFCP PHASE1:Mm9::chr15:54678902..54678911,-#_2c808356ccd804cd36d69a04f78b05bep@chr15:54678902..54678911, -
4.54e-44FFCP PHASE1:Mm9::chr11:96140694..96140720,+#_2c808356ccd804cd36d69a04f78b05bep@chr11:96140694..96140720, +
4.54e-44FFCP PHASE2:Mm9::chr19:24582739..24582748,-#_2c808356ccd804cd36d69a04f78b05bep@chr19:24582739..24582748, -
4.54e-44FFCP PHASE2:Mm9::chr11:53938008..53938022,+#_2c808356ccd804cd36d69a04f78b05bep11@P4ha2
4.54e-44FFCP PHASE2:Mm9::chr7:31507623..31507631,+#_2c808356ccd804cd36d69a04f78b05bep4@Atp4a
4.54e-44FFCP PHASE2:Mm9::chr4:106730107..106730125,-#_2c808356ccd804cd36d69a04f78b05bep@chr4:106730107..106730125, -
4.54e-44FFCP PHASE1:Mm9::chr5:31379845..31379855,+#_2c808356ccd804cd36d69a04f78b05bep@chr5:31379845..31379855, +
4.54e-44FFCP PHASE2:Mm9::chr16:43230846..43230884,+#_2c808356ccd804cd36d69a04f78b05bep@chr16:43230846..43230884, +
4.54e-44FFCP PHASE2:Mm9::chr3:146278590..146278595,-#_2c808356ccd804cd36d69a04f78b05bep10@Dnase2b
4.54e-44FFCP PHASE2:Mm9::chr13:21381141..21381155,-#_2c808356ccd804cd36d69a04f78b05bep@chr13:21381141..21381155, -
4.54e-44FFCP PHASE2:Mm9::chr15:54678983..54678995,-#_2c808356ccd804cd36d69a04f78b05bep@chr15:54678983..54678995, -
4.54e-44FFCP PHASE2:Mm9::chr14:52542711..52542716,-#_2c808356ccd804cd36d69a04f78b05bep2@Rnase13
4.54e-44FFCP PHASE2:Mm9::chr1:168436322..168436326,-#_2c808356ccd804cd36d69a04f78b05bep@chr1:168436322..168436326, -
4.54e-44FFCP PHASE2:Mm9::chr2:152290340..152290344,-#_2c808356ccd804cd36d69a04f78b05bep2@Defb23
4.54e-44FFCP PHASE1:Mm9::chr11:59845404..59845416,-#_2c808356ccd804cd36d69a04f78b05bep@chr11:59845404..59845416, -
4.54e-44FFCP PHASE1:Mm9::chr5:110773731..110773753,+#_2c808356ccd804cd36d69a04f78b05bep@chr5:110773731..110773753, +
4.54e-44FFCP PHASE2:Mm9::chr8:19141447..19141469,+#_2c808356ccd804cd36d69a04f78b05bep@chr8:19141447..19141469, +
4.54e-44FFCP PHASE2:Mm9::chr2:25677632..25677636,-#_2c808356ccd804cd36d69a04f78b05bep@chr2:25677632..25677636, -
4.54e-44FFCP PHASE2:Mm9::chr14:51677141..51677148,-#_2c808356ccd804cd36d69a04f78b05bep7@Rnase12
4.54e-44FFCP PHASE2:Mm9::chr13:21379322..21379338,-#_2c808356ccd804cd36d69a04f78b05bep@chr13:21379322..21379338, -
4.54e-44FFCP PHASE2:Mm9::chr6:147624258..147624285,-#_2c808356ccd804cd36d69a04f78b05bep@chr6:147624258..147624285, -
4.54e-44FFCP PHASE2:Mm9::chr2:164464249..164464258,-#_2c808356ccd804cd36d69a04f78b05bep@chr2:164464249..164464258, -
4.54e-44FFCP PHASE2:Mm9::chr14:51734060..51734066,+#_2c808356ccd804cd36d69a04f78b05bep5@Eddm3b
4.54e-44FFCP PHASE1:Mm9::chr3:146278590..146278595,-#_2c808356ccd804cd36d69a04f78b05bep10@Dnase2b
4.54e-44FFCP PHASE1:Mm9::chr13:21381777..21381789,-#_2c808356ccd804cd36d69a04f78b05bep@chr13:21381777..21381789, -
4.54e-44FFCP PHASE2:Mm9::chr8:126591032..126591039,+#_2c808356ccd804cd36d69a04f78b05bep@chr8:126591032..126591039, +
4.54e-44FFCP PHASE2:Mm9::chr1:165219453..165219469,-#_2c808356ccd804cd36d69a04f78b05bep11@Prrx1
4.54e-44FFCP PHASE1:Mm9::chrX:20219008..20219045,+#_2c808356ccd804cd36d69a04f78b05bep@chrX:20219008..20219045, +
4.54e-44FFCP PHASE1:Mm9::chr7:6204391..6204398,+#_2c808356ccd804cd36d69a04f78b05bep2@Gm6792
4.54e-44FFCP PHASE1:Mm9::chr1:90368977..90368987,+#_2c808356ccd804cd36d69a04f78b05bep@chr1:90368977..90368987, +
4.54e-44FFCP PHASE2:Mm9::chrX:50280152..50280179,+#_2c808356ccd804cd36d69a04f78b05bep@chrX:50280152..50280179, +
4.54e-44FFCP PHASE2:Mm9::chr18:44261480..44261486,+#_2c808356ccd804cd36d69a04f78b05bep@chr18:44261480..44261486, +
4.54e-44FFCP PHASE1:Mm9::chr9:70779586..70779596,+#_2c808356ccd804cd36d69a04f78b05bep@chr9:70779586..70779596, +
4.54e-44FFCP PHASE1:Mm9::chr9:26730625..26730636,-#_2c808356ccd804cd36d69a04f78b05bep3@Gm1110
4.54e-44FFCP PHASE2:Mm9::chr1:89596972..89596981,+#_2c808356ccd804cd36d69a04f78b05bep@chr1:89596972..89596981, +
4.54e-44FFCP PHASE2:Mm9::chr11:101959159..101959163,+#_2c808356ccd804cd36d69a04f78b05bep@chr11:101959159..101959163, +
4.54e-44FFCP PHASE2:Mm9::chr9:35651679..35651691,-#_2c808356ccd804cd36d69a04f78b05bep5@9230110F15Rik
4.54e-44FFCP PHASE1:Mm9::chrX:130496260..130496269,-#_2c808356ccd804cd36d69a04f78b05bep@chrX:130496260..130496269, -
4.54e-44FFCP PHASE2:Mm9::chr16:22504758..22504766,-#_2c808356ccd804cd36d69a04f78b05bep@chr16:22504758..22504766, -
4.54e-44FFCP PHASE1:Mm9::chr2:152302739..152302742,+#_2c808356ccd804cd36d69a04f78b05bep5@Defb20
4.54e-44FFCP PHASE2:Mm9::chr2:148625223..148625234,+#_2c808356ccd804cd36d69a04f78b05bep@chr2:148625223..148625234, +
4.54e-44FFCP PHASE1:Mm9::chr15:75347689..75347703,+#_2c808356ccd804cd36d69a04f78b05bep@chr15:75347689..75347703, +
4.54e-44FFCP PHASE2:Mm9::chr1:87936213..87936218,+#_2c808356ccd804cd36d69a04f78b05bep@chr1:87936213..87936218, +
4.54e-44FFCP PHASE2:Mm9::chr14:69143309..69143319,-#_2c808356ccd804cd36d69a04f78b05bep@chr14:69143309..69143319, -
4.54e-44FFCP PHASE2:Mm9::chrX:20422498..20422506,+#_2c808356ccd804cd36d69a04f78b05bep@chrX:20422498..20422506, +
4.54e-44FFCP PHASE2:Mm9::chr12:104945515..104945524,-#_2c808356ccd804cd36d69a04f78b05bep@chr12:104945515..104945524, -
4.54e-44FFCP PHASE2:Mm9::chr2:158083973..158083982,+#_2c808356ccd804cd36d69a04f78b05bep3@Bpi
4.54e-44FFCP PHASE1:Mm9::chr18:74784728..74784738,+#_2c808356ccd804cd36d69a04f78b05bep@chr18:74784728..74784738, +
4.54e-44FFCP PHASE1:Mm9::chr17:35252614..35252635,-#_2c808356ccd804cd36d69a04f78b05bep3@Ly6g5b
4.54e-44FFCP PHASE2:Mm9::chr8:19062951..19062955,+#_2c808356ccd804cd36d69a04f78b05bep@chr8:19062951..19062955, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0004875&oldid=3274384"