Personal tools

UBERON:0003113: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0003113
|alt_id=UBERON:ZFA_0000863-XAO_0003169
|name=dermatocranium
|namespace=
|def="Subdivision of skeleton that includes all dermal bones in the cranial skeleton[ZFA,modified]." [Wikipedia:Skull_roof, ZFA:0000863]
|xref=AAO:0010154;;TAO:0000863;;VHOG:0001665;;XAO:0003169;;ZFA:0000863
|is_a=UBERON:0011159
|synonym="dermal bone cranium" RELATED [ZFA:0000863];;"dermal part of skull" RELATED [];;"roof of skull" EXACT [Wikipedia:Skull_roof];;"roofing bones of the skull" EXACT [Wikipedia:Skull_roof];;"skull roof" EXACT [Wikipedia:Skull_roof]
|comment=
|comment=
|alt_id=UBERON:ZFA_0000863-XAO_0003169
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Subdivision of skeleton that includes all dermal bones in the cranial skeleton[ZFA,modified]." [Wikipedia:Skull_roof, ZFA:0000863]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003113
|is_a=UBERON:0011159
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0010323
|name=dermatocranium
|namespace=
|obo_creation_date=
|part_of=UBERON:0010323;;UBERON:0010364
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical cluster that is part of the cranium and composed of dermally derived bones.[TAO]" xsd:string;;UBPROP:0000001 "Anatomical cluster that is part of the cranium which consists of dermally derived bones.[AAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical cluster that is part of the cranium and composed of dermally derived bones.[TAO]" xsd:string;;UBPROP:0000001 "Anatomical cluster that is part of the cranium which consists of dermally derived bones.[AAO]" xsd:string
|is_obsolete=
|subset=
|preceded_by=
|synonym="dermal bone cranium" RELATED [ZFA:0000863];;"dermal part of skull" RELATED [];;"roof of skull" EXACT [Wikipedia:Skull_roof];;"roofing bones of the skull" EXACT [Wikipedia:Skull_roof];;"skull roof" EXACT [Wikipedia:Skull_roof]
|union_of=
|xref=AAO:0010154;;TAO:0000863;;VHOG:0001665;;XAO:0003169;;ZFA:0000863
}}
}}

Revision as of 11:22, 12 September 2014

Name:dermatocranium
Definition:"Subdivision of skeleton that includes all dermal bones in the cranial skeleton[ZFA,modified]." [Wikipedia:Skull_roof, ZFA:0000863]
Xrefs:
links:

AAO:0010154
TAO:0000863
VHOG:0001665
XAO:0003169

ZFA:0000863
Synonyms: "dermal bone cranium" RELATED [ZFA:0000863]
"dermal part of skull" RELATED []
"roof of skull" EXACT [Wikipedia:Skull_roof]
"roofing bones of the skull" EXACT [Wikipedia:Skull_roof]
"skull roof" EXACT [Wikipedia:Skull_roof]
Alt_id: UBERON:ZFA_0000863-XAO_0003169

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0011159(primary subdivision of cranial skeletal system)
part_of:UBERON:0010323(cranial skeletal system),UBERON:0010364(dermal skeleton)



Children

part of:UBERON:0002244 (premaxilla),UBERON:0002397 (maxilla),UBERON:0011628 (early premaxilla)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003113 (dermatocranium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_6557b16ad440aff192f5d85e10464ccdp14@C17orf67
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_6557b16ad440aff192f5d85e10464ccdp14@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_ceedbdb1f66fc22776164abb965eed68p12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_ceedbdb1f66fc22776164abb965eed68p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_ceedbdb1f66fc22776164abb965eed68p13@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_ceedbdb1f66fc22776164abb965eed68p11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_ceedbdb1f66fc22776164abb965eed68p13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_ceedbdb1f66fc22776164abb965eed68p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_ceedbdb1f66fc22776164abb965eed68p12@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_ceedbdb1f66fc22776164abb965eed68p11@C17orf67
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_9a5b9664777fe9f917f53185e579c451p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_9a5b9664777fe9f917f53185e579c451p14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_9a5b9664777fe9f917f53185e579c451p14@MAB21L2
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_9a5b9664777fe9f917f53185e579c451p@chr5:75912402..75912418, -
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_b459996e3429ebdec08324f2720a201cp@chr4:151505582..151505614, +
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_b459996e3429ebdec08324f2720a201cp@chr4:151505582..151505614, +
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_62745f1df2e73693cf47aa064a350bffp17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_62745f1df2e73693cf47aa064a350bffp@chr8:57354278..57354286, +
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_62745f1df2e73693cf47aa064a350bffp9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_62745f1df2e73693cf47aa064a350bffp@chr8:57354278..57354286, +
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_62745f1df2e73693cf47aa064a350bffp9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_62745f1df2e73693cf47aa064a350bffp17@RSRC1
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_37655cbc931aa1d7a8d95b6ad7f6e06ep@chr8:57802672..57802682, -
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_37655cbc931aa1d7a8d95b6ad7f6e06ep@chr8:57802672..57802682, -
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_e35f8b6c8505defc010f09014fa523dcp7@ALX1
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_e35f8b6c8505defc010f09014fa523dcp1@AK123925
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_e35f8b6c8505defc010f09014fa523dcp7@ALX1
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_e35f8b6c8505defc010f09014fa523dcp@chr5:75913767..75913778, -
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_e35f8b6c8505defc010f09014fa523dcp@chr5:75913767..75913778, -
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_e35f8b6c8505defc010f09014fa523dcp1@AK123925
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_c5358d9e1216c8a0d6963cb84a0764e1p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_c5358d9e1216c8a0d6963cb84a0764e1p23@FLT1
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_c5358d9e1216c8a0d6963cb84a0764e1p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_c5358d9e1216c8a0d6963cb84a0764e1p23@FLT1
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_737ad6b1bf16042972162214712fd2bdp@chr8:57353666..57353675, -
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_737ad6b1bf16042972162214712fd2bdp@chr8:57353779..57353790, -
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_737ad6b1bf16042972162214712fd2bdp@chr8:57354143..57354152, +
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_737ad6b1bf16042972162214712fd2bdp@chr8:57353666..57353675, -
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_737ad6b1bf16042972162214712fd2bdp@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_737ad6b1bf16042972162214712fd2bdp@chr8:57353779..57353790, -
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_9d6d9d75bd1e75bb7fb214bd0c737b05p8@LHX8
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_9d6d9d75bd1e75bb7fb214bd0c737b05p2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_9d6d9d75bd1e75bb7fb214bd0c737b05p8@LHX8
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_9d6d9d75bd1e75bb7fb214bd0c737b05p12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_9d6d9d75bd1e75bb7fb214bd0c737b05p2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_9d6d9d75bd1e75bb7fb214bd0c737b05p12@FAM65C
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_6fb7766bd4829d82deae19e24e838eb5p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_6fb7766bd4829d82deae19e24e838eb5p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_6fb7766bd4829d82deae19e24e838eb5p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_6fb7766bd4829d82deae19e24e838eb5p@chr16:67687543..67687559, -
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_5a776726c59fa844e79ca2121e461d9ap@chr6:46190219..46190230, -
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_5a776726c59fa844e79ca2121e461d9ap@chr9:125165007..125165016, +
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_5a776726c59fa844e79ca2121e461d9ap@chr6:46190219..46190230, -
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_5a776726c59fa844e79ca2121e461d9ap@chr9:125165007..125165016, +
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_d6cd0efb372dc2aad7aa1e9703d26307p4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_d6cd0efb372dc2aad7aa1e9703d26307p5@PENK
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_d6cd0efb372dc2aad7aa1e9703d26307p@chr10:15760985..15760992, -
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_d6cd0efb372dc2aad7aa1e9703d26307p5@PENK
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_d6cd0efb372dc2aad7aa1e9703d26307p@chr10:15760985..15760992, -
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_d6cd0efb372dc2aad7aa1e9703d26307p4@CPZ
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_e4b79bee1929d4f284644411720cbd54p9@SIX1
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_e4b79bee1929d4f284644411720cbd54p9@SIX1
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_6394190807db1c3aae2eaf425d800175p@chr6:134327986..134327991, -
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_6394190807db1c3aae2eaf425d800175p@chr6:134327986..134327991, -
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_010675feaf0f0b82416ae7b5756d7833p@chr8:57353676..57353688, -
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_010675feaf0f0b82416ae7b5756d7833p@chr13:58291223..58291226, +
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_010675feaf0f0b82416ae7b5756d7833p@chr8:57353676..57353688, -
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_010675feaf0f0b82416ae7b5756d7833p@chr13:58291223..58291226, +
9.85e-34FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_b29de01f1ba3fa5682e4d7b434236644p@chr5:19721484..19721507, -
9.85e-34FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_b29de01f1ba3fa5682e4d7b434236644p4@PLAC1
9.85e-34FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_b29de01f1ba3fa5682e4d7b434236644p12@FBN2
9.85e-34FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_b29de01f1ba3fa5682e4d7b434236644p@chr5:19721484..19721507, -
9.85e-34FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_b29de01f1ba3fa5682e4d7b434236644p4@PLAC1
9.85e-34FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_b29de01f1ba3fa5682e4d7b434236644p12@FBN2
7.48e-30FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_fede296a0662c2c8dee5c5ee9289e6fdp@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_fede296a0662c2c8dee5c5ee9289e6fdp@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_fede296a0662c2c8dee5c5ee9289e6fdp@chr8:57353982..57353991, -
7.48e-30FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_fede296a0662c2c8dee5c5ee9289e6fdp@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_fede296a0662c2c8dee5c5ee9289e6fdp@chr8:57353982..57353991, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_fede296a0662c2c8dee5c5ee9289e6fdp@chr8:57353804..57353821, -
9.99e-30FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_e4c441458f8ca4012428c80616175cf3p7@SHOX2
9.99e-30FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_e4c441458f8ca4012428c80616175cf3p10@ITGA8
9.99e-30FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_e4c441458f8ca4012428c80616175cf3p7@SHOX2
9.99e-30FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_e4c441458f8ca4012428c80616175cf3p10@ITGA8
1.33e-29FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_518272ba20ad00c57b0bfe4e985a66edp@chrX:132670143..132670152, -
1.33e-29FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_518272ba20ad00c57b0bfe4e985a66edp@chr17:79071218..79071221, -
1.33e-29FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_518272ba20ad00c57b0bfe4e985a66edp@chr22:28193943..28193956, -
1.33e-29FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_518272ba20ad00c57b0bfe4e985a66edp@chrX:132670143..132670152, -
1.33e-29FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_518272ba20ad00c57b0bfe4e985a66edp@chr17:79071218..79071221, -
1.33e-29FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_518272ba20ad00c57b0bfe4e985a66edp@chr22:28193943..28193956, -
1.78e-29FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_96e6e955b6c034f1b7ea64f0a67c93d6p@chr1:21904551..21904569, -
1.78e-29FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_96e6e955b6c034f1b7ea64f0a67c93d6p@chr1:21904551..21904569, -
3.16e-29FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_9d7daa802d754715fb4890d346ab66f2p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_9d7daa802d754715fb4890d346ab66f2p18@MEF2D
3.16e-29FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_9d7daa802d754715fb4890d346ab66f2p@chr8:57359975..57359992, -
3.16e-29FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_9d7daa802d754715fb4890d346ab66f2p18@MEF2D
3.16e-29FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_9d7daa802d754715fb4890d346ab66f2p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_9d7daa802d754715fb4890d346ab66f2p@chr8:57359975..57359992, -
4.2e-29FFCP PHASE2:Hg19::chr1:75602768..75602785,+#_916777f982a2fbd39d10e8536d96fbacp@chr1:75602768..75602785, +
4.2e-29FFCP PHASE2:Hg19::chr15:52606315..52606320,-#_916777f982a2fbd39d10e8536d96fbacp@chr15:52606315..52606320, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical cluster that is part of the cranium and composed of dermally derived bones.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical cluster that is part of the cranium which consists of dermally derived bones.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003113&oldid=3274202"