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{{UBERON
{{UBERON
|id=UBERON:0002385
|alt_id=UBERON:FMA_9641-MA_0002437
|name=muscle tissue
|namespace=
|def="Muscle tissue is a contractile tissue made up of actin and myosin fibers[GO]." [GO:0060537, https://sourceforge.net/tracker/index.php?func=detail&aid=2801266&group_id=36855&atid=440764, Wikipedia:Muscle_tissue]
|xref=AAO:0000306;;AEO:0000122;;EHDAA2:0003122;;FMA:9641;;galen:MuscleTissue;;MA:0002437;;MESH:A.02.633;;ncithesaurus:Muscle_Tissue;;SCTID:91727004
|is_a=UBERON:0000479;;UBERON:0004120
|synonym="muscle tissue" EXACT SENSU [];;"portion of muscle tissue" EXACT [FMA:9641];;"textus muscularis" EXACT []
|comment=Vertebrate muscle is categorized into three major muscle types defined by their structural and functional properties: skeletal, cardiac and smooth. In Dmel the counterparts are somatic, heart/cardiac and visceral. Here we take a cell type based approach.
|comment=Vertebrate muscle is categorized into three major muscle types defined by their structural and functional properties: skeletal, cardiac and smooth. In Dmel the counterparts are somatic, heart/cardiac and visceral. Here we take a cell type based approach.
|alt_id=UBERON:FMA_9641-MA_0002437
|disjoint_from=UBERON:0003714
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Muscle tissue is a contractile tissue made up of actin and myosin fibers[GO]." [GO:0060537, https://sourceforge.net/tracker/index.php?func
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=UBERON:0000926
|develops_from=UBERON:0000926
|disjoint_from=UBERON:0003714
|has_quality=
|has_quality=
|id=UBERON:0002385
|is_a=UBERON:0000479 ;;UBERON:0004120
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0000383;;UBERON:0001015
|name=muscle tissue
|namespace=
|obo_creation_date=
|part_of=UBERON:0001015
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0003714;;UBPROP:0000001 "One of the four types of tissue in traditional classifications. Tissue that contains cells with contractile filaments that move past each other and change the size of the cell. Muscle tissue also is separated into three distinct categories.[AAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0003714;;UBPROP:0000001 "One of the four types of tissue in traditional classifications. Tissue that contains cells with contractile filaments that move past each other and change the size of the cell. Muscle tissue also is separated into three distinct categories.[AAO]" xsd:string
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="muscle tissue" EXACT SENSU [];;"portion of muscle tissue" EXACT [FMA:9641];;"textus muscularis" EXACT []
|union_of=
|xref=AAO:0000306;;AEO:0000122;;EHDAA2:0003122;;FMA:9641;;galen:MuscleTissue;;MA:0002437;;MESH:A.02.633;;ncithesaurus:Muscle_Tissue;;SCTID:91727004
}}
}}

Revision as of 11:16, 12 September 2014

Name:muscle tissue
Definition:"Muscle tissue is a contractile tissue made up of actin and myosin fibers[GO]." [GO:0060537, https://sourceforge.net/tracker/index.php?func
Xrefs:
links:

AAO:0000306
AEO:0000122
EHDAA2:0003122
FMA:9641
galen:MuscleTissue
MA:0002437
MESH:A.02.633
ncithesaurus:Muscle_Tissue

SCTID:91727004
Synonyms: "muscle tissue" EXACT SENSU []
"portion of muscle tissue" EXACT [FMA:9641]
"textus muscularis" EXACT []
Comments:Vertebrate muscle is categorized into three major muscle types defined by their structural and functional properties: skeletal, cardiac and smooth. In Dmel the counterparts are somatic, heart/cardiac and visceral. Here we take a cell type based approach.
Alt_id: UBERON:FMA_9641-MA_0002437
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000479(tissue),UBERON:0004120(mesoderm-derived structure)
disjoint_from:UBERON:0003714(neural tissue)
develops_from:UBERON:0000926(mesoderm)
part_of:UBERON:0001015(musculature)



Children

is a:UBERON:0001135 (smooth muscle tissue),UBERON:0002036 (striated muscle tissue)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002385 (muscle tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.24e-58FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_aa4c03511afbc565c8643b8bf08921f9p@chrX:160838683..160838694, +
5.24e-58FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_aa4c03511afbc565c8643b8bf08921f9p@chrX:160838683..160838694, +
5.11e-50FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_3748792692c28954208a5df3b9ae3a60p@chr12:105433069..105433075, -
5.11e-50FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_3748792692c28954208a5df3b9ae3a60p@chrX:65748600..65748616, +
5.11e-50FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_3748792692c28954208a5df3b9ae3a60p@chrX:65748600..65748616, +
5.11e-50FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_3748792692c28954208a5df3b9ae3a60p@chr12:105433069..105433075, -
1.47e-48FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_e01ed7b07d4c41d4cd99ace6852cac03p@chrX:160838787..160838800, +
1.47e-48FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_e01ed7b07d4c41d4cd99ace6852cac03p@chrX:160838787..160838800, +
1.23e-45FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_c814005cc9c0b53b7dd92ddafc62e720p@chr6:53359400..53359406, +
1.23e-45FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_c814005cc9c0b53b7dd92ddafc62e720p@chr6:53359400..53359406, +
8.42e-44FFCP PHASE2:Mm9::chr11:81849982..81850000,+#_fdb744f45703c2473e67333f973d8b95p@chr11:81849982..81850000, +
8.42e-44FFCP PHASE1:Mm9::chr11:81849982..81850000,+#_fdb744f45703c2473e67333f973d8b95p@chr11:81849982..81850000, +
1.15e-40FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_54d6212a69c62a113fdbc6a5a2b780e1p@chr17:14813242..14813246, -
1.15e-40FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_54d6212a69c62a113fdbc6a5a2b780e1p@chr17:14813242..14813246, -
3.7e-39FFCP PHASE2:Mm9::chr1:127573795..127573810,+#_daa978af111faa2709115cbf83e7e39dp4@Gpr39
3.7e-39FFCP PHASE1:Mm9::chr1:127573795..127573810,+#_daa978af111faa2709115cbf83e7e39dp4@Gpr39
3.75e-39FFCP PHASE2:Mm9::chrX:160823859..160823870,+#_04eb7a510408aa54fda6a18868839287p@chrX:160823859..160823870, +
3.75e-39FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_04eb7a510408aa54fda6a18868839287p@chrX:160840025..160840037, +
3.75e-39FFCP PHASE1:Mm9::chrX:160823859..160823870,+#_04eb7a510408aa54fda6a18868839287p@chrX:160823859..160823870, +
3.75e-39FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_04eb7a510408aa54fda6a18868839287p@chrX:160840025..160840037, +
3.75e-39FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_04eb7a510408aa54fda6a18868839287p@chrX:160840048..160840057, +
3.75e-39FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_04eb7a510408aa54fda6a18868839287p@chrX:160840048..160840057, +
4.49e-37FFCP PHASE2:Hg19::chr7:102553470..102553487,+#_d8175879ce5d60dad729874f177af3c1p2@LRRC17
4.49e-37FFCP PHASE1:Hg19::chr7:102553470..102553487,+#_d8175879ce5d60dad729874f177af3c1p2@LRRC17
7.76e-37FFCP PHASE2:Hg19::chr9:35685631..35685657,+#_fa6366f3a9e42e3268c63795c9bfa383p@chr9:35685631..35685657, +
7.76e-37FFCP PHASE1:Hg19::chr9:35685631..35685657,+#_fa6366f3a9e42e3268c63795c9bfa383p@chr9:35685631..35685657, +
1.55e-35FFCP PHASE2:Hg19::chr10:49813077..49813087,-#_59fe2a0e208e80db9566bf7ab454d094p8@ARHGAP22
1.55e-35FFCP PHASE1:Hg19::chr10:49813077..49813087,-#_59fe2a0e208e80db9566bf7ab454d094p8@ARHGAP22
3.31e-35FFCP PHASE2:Mm9::chr3:79689074..79689090,+#_9a18d7e61425d806675934fb23b35441p11@Fam198b
3.31e-35FFCP PHASE1:Mm9::chr3:79689074..79689090,+#_9a18d7e61425d806675934fb23b35441p11@Fam198b
3.69e-35FFCP PHASE1:Mm9::chr1:127574253..127574264,+#_b0c6b3370b8e16fefe0d458bbb912a43p@chr1:127574253..127574264, +
3.69e-35FFCP PHASE2:Mm9::chr1:127574253..127574264,+#_b0c6b3370b8e16fefe0d458bbb912a43p@chr1:127574253..127574264, +
5.09e-35FFCP PHASE1:Mm9::chr1:127573733..127573745,+#_eac44526bac96cb4329f0c634572ca33p7@Gpr39
5.09e-35FFCP PHASE2:Mm9::chr1:127573733..127573745,+#_eac44526bac96cb4329f0c634572ca33p7@Gpr39
5.98e-35FFCP PHASE2:Mm9::chr1:127573690..127573699,+#_ec59a564afc6a433865f64d92634d8c2p11@Gpr39
5.98e-35FFCP PHASE1:Mm9::chr1:127573690..127573699,+#_ec59a564afc6a433865f64d92634d8c2p11@Gpr39
7.03e-35FFCP PHASE1:Mm9::chrX:160839768..160839780,+#_1bfe5f57f5b180f0b71b8a532806c300p@chrX:160839768..160839780, +
7.03e-35FFCP PHASE2:Mm9::chrX:160839768..160839780,+#_1bfe5f57f5b180f0b71b8a532806c300p@chrX:160839768..160839780, +
1.33e-34FFCP PHASE1:Mm9::chr1:127573462..127573472,+#_5b9cfbae15479bac05f37fb222c66cbbp8@Gpr39
1.33e-34FFCP PHASE2:Mm9::chr1:127573462..127573472,+#_5b9cfbae15479bac05f37fb222c66cbbp8@Gpr39
2.4e-34FFCP PHASE2:Hg19::chr10:49813051..49813064,-#_68761a11f39e8131202f580f954bf2a9p4@ARHGAP22
2.4e-34FFCP PHASE1:Hg19::chr10:49813051..49813064,-#_68761a11f39e8131202f580f954bf2a9p4@ARHGAP22
4.34e-34FFCP PHASE1:Hg19::chr7:102553430..102553456,+#_f7f57c9a1fc4bb9c8b1e4f74c423c761p1@LRRC17
4.34e-34FFCP PHASE2:Hg19::chr7:102553430..102553456,+#_f7f57c9a1fc4bb9c8b1e4f74c423c761p1@LRRC17
1.01e-33FFCP PHASE1:Hg19::chr11:102661517..102661541,-#_a77068c368336b5f918844c430d429f5p@chr11:102661517..102661541, -
1.01e-33FFCP PHASE2:Hg19::chr11:102661517..102661541,-#_a77068c368336b5f918844c430d429f5p@chr11:102661517..102661541, -
3.36e-33FFCP PHASE1:Hg19::chr4:74703497..74703511,+#_32991516b439c867baf3d91bfedcf115p@chr4:74703497..74703511, +
3.36e-33FFCP PHASE2:Hg19::chr4:74703497..74703511,+#_32991516b439c867baf3d91bfedcf115p@chr4:74703497..74703511, +
9.96e-33FFCP PHASE2:Hg19::chr9:35684475..35684520,+#_223f5de96a97279df38bdbdb0f35973ep@chr9:35684475..35684520, +
9.96e-33FFCP PHASE1:Hg19::chr9:35684475..35684520,+#_223f5de96a97279df38bdbdb0f35973ep@chr9:35684475..35684520, +
1.11e-32FFCP PHASE2:Hg19::chr4:7846444..7846449,-#_f28cd18cf9797b88b553c69b7514cc06p@chr4:7846444..7846449, -
1.11e-32FFCP PHASE1:Hg19::chr4:7846444..7846449,-#_f28cd18cf9797b88b553c69b7514cc06p@chr4:7846444..7846449, -
1.38e-32FFCP PHASE2:Hg19::chr9:35689148..35689192,+#_6c737aca54e777bb980686c97ffba6e8p@chr9:35689148..35689192, +
1.38e-32FFCP PHASE1:Hg19::chr9:35689148..35689192,+#_6c737aca54e777bb980686c97ffba6e8p@chr9:35689148..35689192, +
3.94e-32FFCP PHASE2:Mm9::chr7:96658543..96658553,-#_737552280314ae5edd23401ce7bce2b4p@chr7:96658543..96658553, -
3.94e-32FFCP PHASE1:Mm9::chr7:96658543..96658553,-#_737552280314ae5edd23401ce7bce2b4p@chr7:96658543..96658553, -
6.63e-32FFCP PHASE1:Hg19::chr7:102553382..102553397,+#_26c72e61e05a489b71149de27d0b34b1p3@LRRC17
6.63e-32FFCP PHASE2:Hg19::chr7:102553382..102553397,+#_26c72e61e05a489b71149de27d0b34b1p3@LRRC17
1.03e-31FFCP PHASE2:Hg19::chr6:148593425..148593498,+#_e490aaaed1a4c4e4d468db8a1bc20f77p2@SASH1
1.03e-31FFCP PHASE1:Hg19::chr6:148593425..148593498,+#_e490aaaed1a4c4e4d468db8a1bc20f77p2@SASH1
1.33e-31FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_d49ced5a7b5a4ca91b9d9296d16cd4b3p@chr7:91081998..91082010, -
1.33e-31FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_d49ced5a7b5a4ca91b9d9296d16cd4b3p@chr7:91081998..91082010, -
1.33e-31FFCP PHASE1:Mm9::chr5:30339923..30339935,+#_d49ced5a7b5a4ca91b9d9296d16cd4b3p2@Il6
1.33e-31FFCP PHASE2:Mm9::chr5:30339923..30339935,+#_d49ced5a7b5a4ca91b9d9296d16cd4b3p2@Il6
1.59e-31FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_873e88d30d4d4c0f232b46a13e90cd9fp@chr10:67598037..67598049, -
1.59e-31FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_873e88d30d4d4c0f232b46a13e90cd9fp@chr10:67598037..67598049, -
2.52e-31FFCP PHASE2:Hg19::chr9:35685445..35685517,+#_ff03558fde2dc10d46cd77d94b84be3bp@chr9:35685445..35685517, +
2.52e-31FFCP PHASE1:Hg19::chr9:35685445..35685517,+#_ff03558fde2dc10d46cd77d94b84be3bp@chr9:35685445..35685517, +
2.72e-31FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_c8c7504415e5ec9b196f634fe8095eaep@chr2:65009852..65009866, -
2.72e-31FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_c8c7504415e5ec9b196f634fe8095eaep@chr2:65009852..65009866, -
2.8e-31FFCP PHASE1:Mm9::chr18:52678391..52678395,-#_9df5aee9319af3dc8b0c181181c2209bp@chr18:52678391..52678395, -
2.8e-31FFCP PHASE2:Mm9::chr18:52678391..52678395,-#_9df5aee9319af3dc8b0c181181c2209bp@chr18:52678391..52678395, -
4.49e-31FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_4adc3c4344db07556f9d49bbaa3d6945p@chr2:134548872..134548879, -
4.49e-31FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_4adc3c4344db07556f9d49bbaa3d6945p@chr2:134548872..134548879, -
4.6e-31FFCP PHASE1:Hg19::chr4:74702338..74702349,+#_3e41dc1327d43addfc5d1657087e977ap2@CXCL6
4.6e-31FFCP PHASE2:Hg19::chr4:74702338..74702349,+#_3e41dc1327d43addfc5d1657087e977ap2@CXCL6
6.22e-31FFCP PHASE2:Hg19::chr4:169059590..169059615,+#_876edba34b67e14387374513a7c5d668p@chr4:169059590..169059615, +
6.22e-31FFCP PHASE1:Hg19::chr4:169059590..169059615,+#_876edba34b67e14387374513a7c5d668p@chr4:169059590..169059615, +
7.65e-31FFCP PHASE2:Mm9::chr6:91222095..91222107,+#_fe5411003f5ef30ff61711e4c791d464p@chr6:91222095..91222107, +
7.65e-31FFCP PHASE1:Mm9::chr6:91222095..91222107,+#_fe5411003f5ef30ff61711e4c791d464p@chr6:91222095..91222107, +
1.01e-30FFCP PHASE2:Mm9::chr5:114822634..114822665,-#_444388b63315ac3148e05538fdb2c2e3p9@Kctd10
1.01e-30FFCP PHASE1:Mm9::chr5:114822634..114822665,-#_444388b63315ac3148e05538fdb2c2e3p9@Kctd10
1.17e-30FFCP PHASE1:Mm9::chr1:127573773..127573786,+#_c72b3e79ca9f4deb122d21c5e28a5b43p6@Gpr39
1.17e-30FFCP PHASE2:Mm9::chr1:127573773..127573786,+#_c72b3e79ca9f4deb122d21c5e28a5b43p6@Gpr39
1.33e-30FFCP PHASE2:Hg19::chr14:96722539..96722555,+#_37a2f1bb9b914231e71a977162ece010p1@BDKRB1
1.33e-30FFCP PHASE1:Hg19::chr14:96722539..96722555,+#_37a2f1bb9b914231e71a977162ece010p1@BDKRB1
1.34e-30FFCP PHASE1:Hg19::chr14:94595800..94595811,-#_dde89f57ce793849d249ec6b5ce9f0f7p3@IFI27L2
1.34e-30FFCP PHASE2:Hg19::chr14:94595800..94595811,-#_dde89f57ce793849d249ec6b5ce9f0f7p3@IFI27L2
1.55e-30FFCP PHASE1:Hg19::chr7:93516035..93516056,+#_658014c4835cb52ba0141dd2d469a363p1@CU675118
1.55e-30FFCP PHASE2:Hg19::chr7:93516035..93516056,+#_658014c4835cb52ba0141dd2d469a363p1@CU675118
1.72e-30FFCP PHASE2:Hg19::chr1:79472477..79472510,-#_fc3f529b92f900666b8c4fd6bcfae3bdp2@ELTD1
1.72e-30FFCP PHASE1:Hg19::chr1:79472477..79472510,-#_fc3f529b92f900666b8c4fd6bcfae3bdp2@ELTD1
6.51e-30FFCP PHASE2:Hg19::chr4:74702666..74702694,+#_b5d9abdd484013ae92433cfe007f8d42p3@CXCL6
6.51e-30FFCP PHASE1:Hg19::chr4:74702666..74702694,+#_b5d9abdd484013ae92433cfe007f8d42p3@CXCL6
7.66e-30FFCP PHASE2:Hg19::chr9:35685273..35685313,+#_0108ba378efc093843c85c5278bd8a3ep@chr9:35685273..35685313, +
7.66e-30FFCP PHASE1:Hg19::chr9:35685273..35685313,+#_0108ba378efc093843c85c5278bd8a3ep@chr9:35685273..35685313, +
8.47e-30FFCP PHASE1:Mm9::chr7:34998469..34998489,-#_1be544ee710994c2d8bef874ef891280p@chr7:34998469..34998489, -
8.47e-30FFCP PHASE2:Mm9::chr7:34998469..34998489,-#_1be544ee710994c2d8bef874ef891280p@chr7:34998469..34998489, -
8.84e-30FFCP PHASE1:Mm9::chrX:160829660..160829667,+#_3b4a0231815d7955ac369538fa5afd6ap14@Figf
8.84e-30FFCP PHASE2:Mm9::chr2:178190171..178190178,+#_3b4a0231815d7955ac369538fa5afd6ap@chr2:178190171..178190178, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "One of the four types of tissue in traditional classifications. Tissue that contains cells with contractile filaments that move past each other and change the size of the cell. Muscle tissue also is separated into three distinct categories.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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