CL:0002433: Difference between revisions
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|develops_from= | |develops_from=CL:0002431 | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
Revision as of 13:04, 27 June 2012
| Name: | CD69-positive, CD4-positive single-positive thymocyte |
|---|---|
| Namespace: | cell;;efo |
| Definition: | "A CD4-positive, CD8-negative thymocyte that expresses high levels of the alpha-beta T cell receptor and is CD69-positive." [GOC:tfm, http://www.immgen.org/index_content.html] |
| Synonyms: |
"intermediate CD4-single-positive" EXACT [] "T.4SP69+.Th" EXACT [] |
| Created by: | tmeehan |
| Creation date: | 2010-10-21T02:46:02Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000810(CD4-positive, alpha-beta thymocyte) |
|---|---|
| develops_from: | CL:0002431(CD4-positive, CD8-intermediate double-positive thymocyte) |
Children
| develops from: | CL:0002432 (CD24-positive, CD4 single-positive thymocyte) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002433 (CD69-positive, CD4-positive single-positive thymocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:162762361..162762364,+#_6658208391c2e4b4385ae1e3153249b0 | p@chr2:162762361..162762364, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:162762361..162762364,+#_6658208391c2e4b4385ae1e3153249b0 | p@chr2:162762361..162762364, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr1:183622379..183622388,-#_6658208391c2e4b4385ae1e3153249b0 | p4@APOBEC4 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr1:183622379..183622388,-#_6658208391c2e4b4385ae1e3153249b0 | p4@APOBEC4 |
| 1.36e-86 | FFCP PHASE1:Mm9::chrX:54476786..54476810,+#_118ee218ea2d517abda8e232719643bd | p@chrX:54476786..54476810, + |
| 1.36e-86 | FFCP PHASE2:Mm9::chr13:30878406..30878419,+#_118ee218ea2d517abda8e232719643bd | p@chr13:30878406..30878419, + |
| 1.36e-86 | FFCP PHASE2:Mm9::chrX:54476786..54476810,+#_118ee218ea2d517abda8e232719643bd | p@chrX:54476786..54476810, + |
| 1.36e-86 | FFCP PHASE1:Mm9::chr13:30878406..30878419,+#_118ee218ea2d517abda8e232719643bd | p@chr13:30878406..30878419, + |
| 1.01e-74 | FFCP PHASE1:Mm9::chr16:52032670..52032685,+#_6ec4ceb9cc2cfc341ffeb5a778fb1faf | p@chr16:52032670..52032685, + |
| 1.01e-74 | FFCP PHASE2:Mm9::chr16:52032670..52032685,+#_6ec4ceb9cc2cfc341ffeb5a778fb1faf | p@chr16:52032670..52032685, + |
| 2.41e-74 | FFCP PHASE2:Mm9::chr16:93777453..93777464,+#_8280dcba2e817b850607cce805da9b26 | p@chr16:93777453..93777464, + |
| 2.41e-74 | FFCP PHASE2:Mm9::chr14:54795946..54795960,+#_8280dcba2e817b850607cce805da9b26 | p1@ENSMUST00000103701 |
| 2.41e-74 | FFCP PHASE1:Mm9::chr14:54795946..54795960,+#_8280dcba2e817b850607cce805da9b26 | p1@ENSMUST00000103701 |
| 2.41e-74 | FFCP PHASE1:Mm9::chr16:93777453..93777464,+#_8280dcba2e817b850607cce805da9b26 | p@chr16:93777453..93777464, + |
| 2.48e-72 | FFCP PHASE2:Mm9::chr11:11587720..11587735,+#_0d0889c0c16ad274bc82215ee5583568 | p@chr11:11587720..11587735, + |
| 2.48e-72 | FFCP PHASE2:Mm9::chr13:30853488..30853499,+#_0d0889c0c16ad274bc82215ee5583568 | p@chr13:30853488..30853499, + |
| 2.48e-72 | FFCP PHASE1:Mm9::chr14:122362270..122362291,-#_0d0889c0c16ad274bc82215ee5583568 | p@chr14:122362270..122362291, - |
| 2.48e-72 | FFCP PHASE2:Mm9::chr11:11592840..11592849,+#_0d0889c0c16ad274bc82215ee5583568 | p@chr11:11592840..11592849, + |
| 2.48e-72 | FFCP PHASE1:Mm9::chr11:11587720..11587735,+#_0d0889c0c16ad274bc82215ee5583568 | p@chr11:11587720..11587735, + |
| 2.48e-72 | FFCP PHASE1:Mm9::chr15:80403112..80403122,+#_0d0889c0c16ad274bc82215ee5583568 | p12@Grap2 |
| 2.48e-72 | FFCP PHASE1:Mm9::chr11:11592840..11592849,+#_0d0889c0c16ad274bc82215ee5583568 | p@chr11:11592840..11592849, + |
| 2.48e-72 | FFCP PHASE2:Mm9::chr15:80403112..80403122,+#_0d0889c0c16ad274bc82215ee5583568 | p12@Grap2 |
| 2.48e-72 | FFCP PHASE1:Mm9::chr14:54827490..54827502,+#_0d0889c0c16ad274bc82215ee5583568 | p@chr14:54827490..54827502, + |
| 2.48e-72 | FFCP PHASE2:Mm9::chr14:122362270..122362291,-#_0d0889c0c16ad274bc82215ee5583568 | p@chr14:122362270..122362291, - |
| 2.48e-72 | FFCP PHASE2:Mm9::chr14:54827490..54827502,+#_0d0889c0c16ad274bc82215ee5583568 | p@chr14:54827490..54827502, + |
| 2.48e-72 | FFCP PHASE1:Mm9::chr13:30853488..30853499,+#_0d0889c0c16ad274bc82215ee5583568 | p@chr13:30853488..30853499, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr9:75772924..75772957,+#_eb46e3cc8f1b2edaf6f4cd739f3574af | p17@ANXA1 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr9:75772924..75772957,+#_eb46e3cc8f1b2edaf6f4cd739f3574af | p17@ANXA1 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr20:37493438..37493456,-#_6e54aaba0768dccd9a6433694039c07c | p@chr20:37493438..37493456, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr20:37493438..37493456,-#_6e54aaba0768dccd9a6433694039c07c | p@chr20:37493438..37493456, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr2:204816181..204816219,-#_6e54aaba0768dccd9a6433694039c07c | p@chr2:204816181..204816219, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr2:204816181..204816219,-#_6e54aaba0768dccd9a6433694039c07c | p@chr2:204816181..204816219, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr11:118209514..118209525,+#_6e54aaba0768dccd9a6433694039c07c | p@chr11:118209514..118209525, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr11:118209514..118209525,+#_6e54aaba0768dccd9a6433694039c07c | p@chr11:118209514..118209525, + |
| 1.05e-65 | FFCP PHASE1:Mm9::chr14:53242248..53242261,+#_fe9c7c14933b2da958f496f7492010e3 | p@chr14:53242248..53242261, + |
| 1.05e-65 | FFCP PHASE2:Mm9::chr14:53242248..53242261,+#_fe9c7c14933b2da958f496f7492010e3 | p@chr14:53242248..53242261, + |
| 1.74e-65 | FFCP PHASE1:Mm9::chr5:123439274..123439290,+#_e4427442ba8c7105eab00f7abfa9d51a | p4@ENSMUST00000148466, p4@uc008zmw.1 |
| 1.74e-65 | FFCP PHASE2:Mm9::chr5:123439274..123439290,+#_e4427442ba8c7105eab00f7abfa9d51a | p4@ENSMUST00000148466, p4@uc008zmw.1 |
| 2.25e-65 | FFCP PHASE1:Mm9::chr1:140069290..140069308,+#_a34fc130ef2db841fe67afa36fc6764b | p@chr1:140069290..140069308, + |
| 2.25e-65 | FFCP PHASE2:Mm9::chr1:140069290..140069308,+#_a34fc130ef2db841fe67afa36fc6764b | p@chr1:140069290..140069308, + |
| 2.25e-65 | FFCP PHASE1:Mm9::chr15:80403104..80403111,+#_a34fc130ef2db841fe67afa36fc6764b | p10@Grap2 |
| 2.25e-65 | FFCP PHASE1:Mm9::chr5:123465978..123465989,-#_a34fc130ef2db841fe67afa36fc6764b | p@chr5:123465978..123465989, - |
| 2.25e-65 | FFCP PHASE2:Mm9::chr5:123465978..123465989,-#_a34fc130ef2db841fe67afa36fc6764b | p@chr5:123465978..123465989, - |
| 2.25e-65 | FFCP PHASE2:Mm9::chr15:80403104..80403111,+#_a34fc130ef2db841fe67afa36fc6764b | p10@Grap2 |
| 2.9e-65 | FFCP PHASE1:Mm9::chr14:54817583..54817593,-#_f7f4fa96d4d959cd98604ef269a676aa | p@chr14:54817583..54817593, - |
| 2.9e-65 | FFCP PHASE2:Mm9::chr6:41504409..41504422,-#_f7f4fa96d4d959cd98604ef269a676aa | p@chr6:41504409..41504422, - |
| 2.9e-65 | FFCP PHASE2:Mm9::chr11:46200242..46200255,+#_f7f4fa96d4d959cd98604ef269a676aa | p@chr11:46200242..46200255, + |
| 2.9e-65 | FFCP PHASE1:Mm9::chr11:46200242..46200255,+#_f7f4fa96d4d959cd98604ef269a676aa | p@chr11:46200242..46200255, + |
| 2.9e-65 | FFCP PHASE1:Mm9::chr6:41504409..41504422,-#_f7f4fa96d4d959cd98604ef269a676aa | p@chr6:41504409..41504422, - |
| 2.9e-65 | FFCP PHASE2:Mm9::chr14:54817583..54817593,-#_f7f4fa96d4d959cd98604ef269a676aa | p@chr14:54817583..54817593, - |
| 3.74e-65 | FFCP PHASE1:Mm9::chr4:32328217..32328228,-#_609f55e711c49509e76fb485237c3640 | p@chr4:32328217..32328228, - |
| 3.74e-65 | FFCP PHASE2:Mm9::chr4:32328217..32328228,-#_609f55e711c49509e76fb485237c3640 | p@chr4:32328217..32328228, - |
| 6.21e-65 | FFCP PHASE2:Mm9::chr11:46200110..46200124,-#_a13949e4540933f1dab366c409330e08 | p@chr11:46200110..46200124, - |
| 6.21e-65 | FFCP PHASE1:Mm9::chr5:123465955..123465966,-#_a13949e4540933f1dab366c409330e08 | p@chr5:123465955..123465966, - |
| 6.21e-65 | FFCP PHASE2:Mm9::chr13:105412781..105412798,+#_a13949e4540933f1dab366c409330e08 | p@chr13:105412781..105412798, + |
| 6.21e-65 | FFCP PHASE1:Mm9::chr11:46200110..46200124,-#_a13949e4540933f1dab366c409330e08 | p@chr11:46200110..46200124, - |
| 6.21e-65 | FFCP PHASE1:Mm9::chr13:105412781..105412798,+#_a13949e4540933f1dab366c409330e08 | p@chr13:105412781..105412798, + |
| 6.21e-65 | FFCP PHASE2:Mm9::chr5:123465955..123465966,-#_a13949e4540933f1dab366c409330e08 | p@chr5:123465955..123465966, - |
| 1.0e-60 | FFCP PHASE1:Mm9::chr2:11097490..11097500,+#_576c6e636734c09efa63a95ed11f8ce5 | p@chr2:11097490..11097500, + |
| 1.0e-60 | FFCP PHASE2:Mm9::chr2:11097490..11097500,+#_576c6e636734c09efa63a95ed11f8ce5 | p@chr2:11097490..11097500, + |
| 1.33e-60 | FFCP PHASE1:Mm9::chr5:108160486..108160515,-#_8afa7250c98681b610897e5b5dda9e11 | p@chr5:108160486..108160515, - |
| 1.33e-60 | FFCP PHASE1:Mm9::chr12:70398221..70398232,-#_8afa7250c98681b610897e5b5dda9e11 | p@chr12:70398221..70398232, - |
| 1.33e-60 | FFCP PHASE2:Mm9::chr10:128157769..128157772,-#_8afa7250c98681b610897e5b5dda9e11 | p@chr10:128157769..128157772, - |
| 1.33e-60 | FFCP PHASE1:Mm9::chr10:128157769..128157772,-#_8afa7250c98681b610897e5b5dda9e11 | p@chr10:128157769..128157772, - |
| 1.33e-60 | FFCP PHASE2:Mm9::chr5:108160486..108160515,-#_8afa7250c98681b610897e5b5dda9e11 | p@chr5:108160486..108160515, - |
| 1.33e-60 | FFCP PHASE1:Mm9::chr7:150943007..150943022,+#_8afa7250c98681b610897e5b5dda9e11 | p@chr7:150943007..150943022, + |
| 1.33e-60 | FFCP PHASE2:Mm9::chr12:70398221..70398232,-#_8afa7250c98681b610897e5b5dda9e11 | p@chr12:70398221..70398232, - |
| 1.33e-60 | FFCP PHASE2:Mm9::chr7:150943007..150943022,+#_8afa7250c98681b610897e5b5dda9e11 | p@chr7:150943007..150943022, + |
| 1.77e-60 | FFCP PHASE1:Mm9::chr14:53414758..53414769,+#_57c4082a9cf2544a9d25902a2e2d0ca9 | p1@ENSMUST00000103582 |
| 1.77e-60 | FFCP PHASE2:Mm9::chr14:53414758..53414769,+#_57c4082a9cf2544a9d25902a2e2d0ca9 | p1@ENSMUST00000103582 |
| 2.34e-60 | FFCP PHASE2:Mm9::chr2:73290853..73290866,+#_96272e3f02a57c4930f9b8f807fe652d | p@chr2:73290853..73290866, + |
| 2.34e-60 | FFCP PHASE1:Mm9::chr2:73290853..73290866,+#_96272e3f02a57c4930f9b8f807fe652d | p@chr2:73290853..73290866, + |
| 4.1e-60 | FFCP PHASE1:Mm9::chr1:138476217..138476228,+#_002f70dbf2ffe56011d9ec71cbff439b | p@chr1:138476217..138476228, + |
| 4.1e-60 | FFCP PHASE2:Mm9::chr2:11181142..11181148,-#_002f70dbf2ffe56011d9ec71cbff439b | p@chr2:11181142..11181148, - |
| 4.1e-60 | FFCP PHASE1:Mm9::chr2:11181142..11181148,-#_002f70dbf2ffe56011d9ec71cbff439b | p@chr2:11181142..11181148, - |
| 4.1e-60 | FFCP PHASE2:Mm9::chr1:138476217..138476228,+#_002f70dbf2ffe56011d9ec71cbff439b | p@chr1:138476217..138476228, + |
| 4.1e-60 | FFCP PHASE2:Mm9::chr9:14708434..14708444,-#_002f70dbf2ffe56011d9ec71cbff439b | p8@Folr4 |
| 4.1e-60 | FFCP PHASE1:Mm9::chr9:14708434..14708444,-#_002f70dbf2ffe56011d9ec71cbff439b | p8@Folr4 |
| 6.9e-59 | FFCP PHASE2:Mm9::chrX:54477240..54477286,+#_b870e70601a74e84718543b9404c01e1 | p@chrX:54477240..54477286, + |
| 6.9e-59 | FFCP PHASE1:Mm9::chr11:87558695..87558707,+#_b870e70601a74e84718543b9404c01e1 | p@chr11:87558695..87558707, + |
| 6.9e-59 | FFCP PHASE1:Mm9::chrX:54465221..54465232,+#_b870e70601a74e84718543b9404c01e1 | p4@Cd40lg |
| 6.9e-59 | FFCP PHASE1:Mm9::chrX:54477240..54477286,+#_b870e70601a74e84718543b9404c01e1 | p@chrX:54477240..54477286, + |
| 6.9e-59 | FFCP PHASE2:Mm9::chr11:87558695..87558707,+#_b870e70601a74e84718543b9404c01e1 | p@chr11:87558695..87558707, + |
| 6.9e-59 | FFCP PHASE2:Mm9::chrX:54465221..54465232,+#_b870e70601a74e84718543b9404c01e1 | p4@Cd40lg |
| 1.09e-58 | FFCP PHASE2:Mm9::chr4:32339235..32339263,+#_40a4e2b54ee9036614a5a85e721f72db | p@chr4:32339235..32339263, + |
| 1.09e-58 | FFCP PHASE1:Mm9::chr4:32339235..32339263,+#_40a4e2b54ee9036614a5a85e721f72db | p@chr4:32339235..32339263, + |
| 1.71e-58 | FFCP PHASE2:Mm9::chr16:23175296..23175310,+#_e4f77050e3e0db88fdfe9e254353c8a1 | p3@uc007ytl.1 |
| 1.71e-58 | FFCP PHASE1:Mm9::chr16:23175296..23175310,+#_e4f77050e3e0db88fdfe9e254353c8a1 | p3@uc007ytl.1 |
| 1.71e-58 | FFCP PHASE1:Mm9::chr19:10904395..10904400,-#_e4f77050e3e0db88fdfe9e254353c8a1 | p5@Cd6 |
| 1.71e-58 | FFCP PHASE2:Mm9::chr19:10904395..10904400,-#_e4f77050e3e0db88fdfe9e254353c8a1 | p5@Cd6 |
| 2.15e-58 | FFCP PHASE1:Mm9::chr14:54831123..54831141,+#_59532f0fbe040e7e3c14aae374bb6f5b | p1@ENSMUST00000103733 |
| 2.15e-58 | FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_59532f0fbe040e7e3c14aae374bb6f5b | p1@ENSMUST00000103733 |
| 2.69e-58 | FFCP PHASE2:Mm9::chr4:32339511..32339518,+#_1b68be5778d8737dce950ab58cbf346d | p@chr4:32339511..32339518, + |
| 2.69e-58 | FFCP PHASE1:Mm9::chr4:32339511..32339518,+#_1b68be5778d8737dce950ab58cbf346d | p@chr4:32339511..32339518, + |
| 2.69e-58 | FFCP PHASE2:Mm9::chr4:151490126..151490137,+#_1b68be5778d8737dce950ab58cbf346d | p3@Tnfrsf25 |
| 2.69e-58 | FFCP PHASE1:Mm9::chr4:151490126..151490137,+#_1b68be5778d8737dce950ab58cbf346d | p3@Tnfrsf25 |
| 3.38e-58 | FFCP PHASE2:Mm9::chr6:48656532..48656548,+#_5abce72e29ecbd7814b461e384457dc9 | p@chr6:48656532..48656548, + |
| 3.38e-58 | FFCP PHASE1:Mm9::chr6:48656532..48656548,+#_5abce72e29ecbd7814b461e384457dc9 | p@chr6:48656532..48656548, + |
| 3.91e-58 | FFCP PHASE2:Mm9::chr10:59842970..59842980,-#_3a2c59028aa245782852b4c2d242939c | p3@Cdh23 |
| 3.91e-58 | FFCP PHASE2:Mm9::chr1:140059691..140059704,+#_3a2c59028aa245782852b4c2d242939c | p@chr1:140059691..140059704, + |
