CL:0000955: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 15: | Line 15: | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=CL:0000826 | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
Revision as of 13:02, 27 June 2012
| Name: | pre-B-II cell | ||
|---|---|---|---|
| Namespace: | cell;;efo | ||
| Definition: | "A pre-B-II cell is a precursor B cell that expresses immunoglobulin mu heavy chain (IgHmu+), and lack expression of CD34, TdT, immunoglobulin kappa light chain and immunoglobulin lambda light chain." [GO_REF:0000031, GOC:rhs, GOC:tfm, PMID:9785673] | ||
| Xrefs: |
| ||
| Synonyms: | "pre-B-lymphocyte" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000817(precursor B cell) |
|---|---|
| develops_from: | CL:0000826(pro-B cell) |
Children
| is a: | CL:0000954 (small pre-B-II cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000955 (pre-B-II cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.55e-98 | FFCP PHASE2:Hg19::chrX:89012355..89012363,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chrX:89012355..89012363, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:76471146..76471155,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr17:76471146..76471155, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:8808206..8808209,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr12:8808206..8808209, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr22:23234780..23234786,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr22:23234780..23234786, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:117256221..117256231,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr12:117256221..117256231, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr9:138904824..138904829,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr9:138904824..138904829, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:166581590..166581596,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr6:166581590..166581596, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:19436672..19436686,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr3:19436672..19436686, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:6686484..6686491,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr3:6686484..6686491, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:77581116..77581120,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr2:77581116..77581120, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:39962337..39962342,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr6:39962337..39962342, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:8046990..8046993,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr4:8046990..8046993, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:76475275..76475285,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr17:76475275..76475285, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr14:53594794..53594799,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr14:53594794..53594799, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:122458855..122458857,+#_52b99d9e924181bfc3bad0e6f3b3557f | p16@BCL7A |
| 1.55e-98 | FFCP PHASE2:Hg19::chr21:20747453..20747465,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr21:20747453..20747465, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chrX:42727038..42727047,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chrX:42727038..42727047, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:3881462..3881469,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr4:3881462..3881469, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr11:26124040..26124064,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr11:26124040..26124064, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:158747347..158747353,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr3:158747347..158747353, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:164466345..164466352,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr6:164466345..164466352, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:101853882..101853891,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr1:101853882..101853891, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:40953942..40953946,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr12:40953942..40953946, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr4:176353908..176353917,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr4:176353908..176353917, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:164466325..164466331,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr6:164466325..164466331, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:122462770..122462775,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr12:122462770..122462775, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:76471163..76471166,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr17:76471163..76471166, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:128270027..128270033,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr8:128270027..128270033, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chrX:89012355..89012363,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chrX:89012355..89012363, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:40991131..40991149,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr12:40991131..40991149, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:8808206..8808209,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr12:8808206..8808209, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:166581265..166581274,-#_52b99d9e924181bfc3bad0e6f3b3557f | p5@T |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:86415255..86415288,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr7:86415255..86415288, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr5:114291872..114291873,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr5:114291872..114291873, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:168236611..168236612,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr3:168236611..168236612, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:178947187..178947192,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr3:178947187..178947192, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr21:20752389..20752420,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr21:20752389..20752420, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr21:20747453..20747465,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr21:20747453..20747465, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:79363599..79363606,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr3:79363599..79363606, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chrX:42727038..42727047,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chrX:42727038..42727047, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:56410468..56410499,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr10:56410468..56410499, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:164466441..164466449,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr6:164466441..164466449, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr4:176358284..176358287,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr4:176358284..176358287, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr15:66464730..66464736,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr15:66464730..66464736, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:164466345..164466352,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr6:164466345..164466352, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:101853882..101853891,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr1:101853882..101853891, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:176353908..176353917,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr4:176353908..176353917, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr21:20867728..20867731,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr21:20867728..20867731, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:40953942..40953946,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr12:40953942..40953946, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr5:88646759..88646764,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr5:88646759..88646764, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:17349613..17349631,-#_52b99d9e924181bfc3bad0e6f3b3557f | p8@SDHB |
| 1.55e-98 | FFCP PHASE1:Hg19::chr11:26122006..26122011,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr11:26122006..26122011, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:128270027..128270033,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr8:128270027..128270033, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:77746703..77746711,-#_52b99d9e924181bfc3bad0e6f3b3557f | p9@LRRTM4 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:4313331..4313334,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr12:4313331..4313334, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:166581265..166581274,-#_52b99d9e924181bfc3bad0e6f3b3557f | p5@T |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:168337915..168337930,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr3:168337915..168337930, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:86415255..86415288,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr7:86415255..86415288, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr21:20752617..20752622,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr21:20752617..20752622, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:178947187..178947192,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr3:178947187..178947192, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr21:20752389..20752420,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr21:20752389..20752420, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:166581583..166581586,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr6:166581583..166581586, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr14:106829914..106829921,-#_52b99d9e924181bfc3bad0e6f3b3557f | p1@HM996258, p1@HM996415, p1@HM996438 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr4:8046897..8046900,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr4:8046897..8046900, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:79363599..79363606,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr3:79363599..79363606, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:39962295..39962305,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr6:39962295..39962305, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:164466441..164466449,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr6:164466441..164466449, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr9:138904824..138904829,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr9:138904824..138904829, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:176358284..176358287,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr4:176358284..176358287, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:66464730..66464736,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr15:66464730..66464736, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:117256221..117256231,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr12:117256221..117256231, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:17349654..17349690,-#_52b99d9e924181bfc3bad0e6f3b3557f | p6@SDHB |
| 1.55e-98 | FFCP PHASE1:Hg19::chr21:20867728..20867731,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr21:20867728..20867731, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr5:88646759..88646764,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr5:88646759..88646764, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr11:26124040..26124064,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr11:26124040..26124064, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:122458855..122458857,+#_52b99d9e924181bfc3bad0e6f3b3557f | p16@BCL7A |
| 1.55e-98 | FFCP PHASE2:Hg19::chr14:53594794..53594799,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr14:53594794..53594799, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:168236611..168236612,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr3:168236611..168236612, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:77746775..77746779,-#_52b99d9e924181bfc3bad0e6f3b3557f | p14@LRRTM4 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:17349613..17349631,-#_52b99d9e924181bfc3bad0e6f3b3557f | p8@SDHB |
| 1.55e-98 | FFCP PHASE2:Hg19::chr17:76471146..76471155,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr17:76471146..76471155, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:77746703..77746711,-#_52b99d9e924181bfc3bad0e6f3b3557f | p9@LRRTM4 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr10:56410468..56410499,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr10:56410468..56410499, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:158747347..158747353,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr3:158747347..158747353, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr22:23234780..23234786,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr22:23234780..23234786, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:122462770..122462775,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr12:122462770..122462775, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr21:20752617..20752622,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr21:20752617..20752622, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:166581590..166581596,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr6:166581590..166581596, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:19436672..19436686,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr3:19436672..19436686, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr4:8046990..8046993,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr4:8046990..8046993, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr17:76475275..76475285,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr17:76475275..76475285, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:6686484..6686491,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr3:6686484..6686491, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:166581583..166581586,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr6:166581583..166581586, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:77581116..77581120,-#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr2:77581116..77581120, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:40991131..40991149,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr12:40991131..40991149, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr14:106829914..106829921,-#_52b99d9e924181bfc3bad0e6f3b3557f | p1@HM996258, p1@HM996415, p1@HM996438 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:39962337..39962342,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr6:39962337..39962342, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:39962295..39962305,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr6:39962295..39962305, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:8046897..8046900,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr4:8046897..8046900, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr5:114291872..114291873,+#_52b99d9e924181bfc3bad0e6f3b3557f | p@chr5:114291872..114291873, + |
