CL:0000075: Difference between revisions
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{{CL | {{CL | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0000075 | |||
|is_a=CL:0000066 ;;CL:0002371 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=columnar/cuboidal epithelial cell | |||
|namespace=cell | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | ||
| | |subset= | ||
| | |synonym= | ||
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}} | }} | ||
Revision as of 10:13, 12 September 2014
| Name: | columnar/cuboidal epithelial cell |
|---|---|
| Namespace: | cell |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000066(epithelial cell),CL:0002371(somatic cell) |
|---|
Children
| is a: | CL:0000067 (ciliated epithelial cell),CL:0000239 (brush border epithelial cell),CL:0000710 (neurecto-epithelial cell),CL:0002224 (lens epithelial cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10647-109A8 (lens epithelial cell line:SRA 01/04)
- 10691-109F7 (meningioma cell line:HKBMM)
- 11242-116D9 (Ciliary Epithelial Cells, donor1)
- 11274-116H5 (Melanocyte - light, donor1)
- 11323-117D9 (Ciliary Epithelial Cells, donor2)
- 11351-117H1 (Melanocyte - light, donor2)
- 11399-118D4 (Ciliary Epithelial Cells, donor3)
- 11423-118G1 (Melanocyte - light, donor3)
- 11502-119F8 (Melanocyte - dark, donor1)
- 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
... further results Mouse (Mus musculus)
- 10647-109A8 (lens epithelial cell line:SRA 01/04)
- 10691-109F7 (meningioma cell line:HKBMM)
- 11242-116D9 (Ciliary Epithelial Cells, donor1)
- 11274-116H5 (Melanocyte - light, donor1)
- 11323-117D9 (Ciliary Epithelial Cells, donor2)
- 11351-117H1 (Melanocyte - light, donor2)
- 11399-118D4 (Ciliary Epithelial Cells, donor3)
- 11423-118G1 (Melanocyte - light, donor3)
- 11502-119F8 (Melanocyte - dark, donor1)
- 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000075 (columnar/cuboidal epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 6.52e-56 | FFCP PHASE2:Mm9::chr9:50547790..50547793,+#_8f8c679af7815cd04c707797ad5724c8 | p@chr9:50547790..50547793, + |
| 6.52e-56 | FFCP PHASE1:Mm9::chr9:50547790..50547793,+#_8f8c679af7815cd04c707797ad5724c8 | p@chr9:50547790..50547793, + |
| 1.01e-55 | FFCP PHASE2:Mm9::chr8:122335239..122335244,+#_7a80e3c37547fcf2ba714f55009e0ff4 | p@chr8:122335239..122335244, + |
| 1.01e-55 | FFCP PHASE1:Mm9::chr8:122335239..122335244,+#_7a80e3c37547fcf2ba714f55009e0ff4 | p@chr8:122335239..122335244, + |
| 1.21e-55 | FFCP PHASE2:Mm9::chr17:46693370..46693378,+#_76cc84082184e9f474bf9096b58142c9 | p@chr17:46693370..46693378, + |
| 1.21e-55 | FFCP PHASE1:Mm9::chr17:46693370..46693378,+#_76cc84082184e9f474bf9096b58142c9 | p@chr17:46693370..46693378, + |
| 1.12e-51 | FFCP PHASE2:Hg19::chrX:9707625..9707629,-#_2d7c69f018595c78cc2cf5f760d99484 | p6@GPR143 |
| 1.12e-51 | FFCP PHASE1:Hg19::chrX:9707625..9707629,-#_2d7c69f018595c78cc2cf5f760d99484 | p6@GPR143 |
| 2.72e-51 | FFCP PHASE2:Hg19::chr6:10412262..10412271,-#_d36936d5023eab0a1effa65b77a5059e | p21@TFAP2A |
| 2.72e-51 | FFCP PHASE1:Hg19::chr6:10412262..10412271,-#_d36936d5023eab0a1effa65b77a5059e | p21@TFAP2A |
| 3.82e-51 | FFCP PHASE1:Hg19::chr9:12709332..12709345,+#_0c267ee6752b6f64387d0a4716d7413d | p@chr9:12709332..12709345, + |
| 3.82e-51 | FFCP PHASE1:Hg19::chr9:12708060..12708071,-#_0c267ee6752b6f64387d0a4716d7413d | p@chr9:12708060..12708071, - |
| 3.82e-51 | FFCP PHASE2:Hg19::chr9:12693291..12693298,+#_0c267ee6752b6f64387d0a4716d7413d | p33@TYRP1 |
| 3.82e-51 | FFCP PHASE2:Hg19::chr6:4610902..4610913,+#_0c267ee6752b6f64387d0a4716d7413d | p1@ENST00000380106 |
| 3.82e-51 | FFCP PHASE1:Hg19::chr9:12693291..12693298,+#_0c267ee6752b6f64387d0a4716d7413d | p33@TYRP1 |
| 3.82e-51 | FFCP PHASE1:Hg19::chr6:4610902..4610913,+#_0c267ee6752b6f64387d0a4716d7413d | p1@ENST00000380106 |
| 3.82e-51 | FFCP PHASE2:Hg19::chr19:3557867..3557877,-#_0c267ee6752b6f64387d0a4716d7413d | p7@MFSD12 |
| 3.82e-51 | FFCP PHASE1:Hg19::chr16:89986251..89986268,+#_0c267ee6752b6f64387d0a4716d7413d | p@chr16:89986251..89986268, + |
| 3.82e-51 | FFCP PHASE1:Hg19::chr19:3557867..3557877,-#_0c267ee6752b6f64387d0a4716d7413d | p7@MFSD12 |
| 3.82e-51 | FFCP PHASE2:Hg19::chr1:1497497..1497523,-#_0c267ee6752b6f64387d0a4716d7413d | p1@AK129493 |
| 3.82e-51 | FFCP PHASE2:Hg19::chr9:12695585..12695593,+#_0c267ee6752b6f64387d0a4716d7413d | p24@TYRP1 |
| 3.82e-51 | FFCP PHASE2:Hg19::chr1:154401791..154401807,+#_0c267ee6752b6f64387d0a4716d7413d | p11@IL6R |
| 3.82e-51 | FFCP PHASE2:Hg19::chr9:12708978..12708990,+#_0c267ee6752b6f64387d0a4716d7413d | p@chr9:12708978..12708990, + |
| 3.82e-51 | FFCP PHASE2:Hg19::chr16:89986251..89986268,+#_0c267ee6752b6f64387d0a4716d7413d | p@chr16:89986251..89986268, + |
| 3.82e-51 | FFCP PHASE1:Hg19::chr1:1497497..1497523,-#_0c267ee6752b6f64387d0a4716d7413d | p1@AK129493 |
| 3.82e-51 | FFCP PHASE1:Hg19::chr9:12695585..12695593,+#_0c267ee6752b6f64387d0a4716d7413d | p24@TYRP1 |
| 3.82e-51 | FFCP PHASE1:Hg19::chr9:12708978..12708990,+#_0c267ee6752b6f64387d0a4716d7413d | p@chr9:12708978..12708990, + |
| 3.82e-51 | FFCP PHASE1:Hg19::chr1:154401791..154401807,+#_0c267ee6752b6f64387d0a4716d7413d | p11@IL6R |
| 3.82e-51 | FFCP PHASE2:Hg19::chr9:12709332..12709345,+#_0c267ee6752b6f64387d0a4716d7413d | p@chr9:12709332..12709345, + |
| 3.82e-51 | FFCP PHASE2:Hg19::chr9:12708060..12708071,-#_0c267ee6752b6f64387d0a4716d7413d | p@chr9:12708060..12708071, - |
| 3.82e-51 | FFCP PHASE2:Hg19::chr9:12702367..12702377,+#_0c267ee6752b6f64387d0a4716d7413d | p@chr9:12702367..12702377, + |
| 3.82e-51 | FFCP PHASE1:Hg19::chr9:12702367..12702377,+#_0c267ee6752b6f64387d0a4716d7413d | p@chr9:12702367..12702377, + |
| 4.24e-50 | FFCP PHASE2:Mm9::chr12:79850576..79850587,-#_a04b3d0d80a140eb4949da586c3f5e6b | p@chr12:79850576..79850587, - |
| 4.24e-50 | FFCP PHASE2:Mm9::chr4:141179191..141179200,+#_a04b3d0d80a140eb4949da586c3f5e6b | p@chr4:141179191..141179200, + |
| 4.24e-50 | FFCP PHASE1:Mm9::chr4:141179191..141179200,+#_a04b3d0d80a140eb4949da586c3f5e6b | p@chr4:141179191..141179200, + |
| 4.24e-50 | FFCP PHASE1:Mm9::chr12:79850576..79850587,-#_a04b3d0d80a140eb4949da586c3f5e6b | p@chr12:79850576..79850587, - |
| 5.28e-50 | FFCP PHASE1:Mm9::chr15:84503292..84503296,+#_2bdb9f5c078362eb27edb1e19663b240 | p@chr15:84503292..84503296, + |
| 5.28e-50 | FFCP PHASE1:Mm9::chr12:40668168..40668171,+#_2bdb9f5c078362eb27edb1e19663b240 | p@chr12:40668168..40668171, + |
| 5.28e-50 | FFCP PHASE2:Mm9::chr12:40668168..40668171,+#_2bdb9f5c078362eb27edb1e19663b240 | p@chr12:40668168..40668171, + |
| 5.28e-50 | FFCP PHASE2:Mm9::chr15:84503292..84503296,+#_2bdb9f5c078362eb27edb1e19663b240 | p@chr15:84503292..84503296, + |
| 4.72e-48 | FFCP PHASE1:Hg19::chr17:505227..505267,-#_d64db4b72a36cbe060d316f6148a9147 | p@chr17:505227..505267, - |
| 4.72e-48 | FFCP PHASE2:Hg19::chr17:505227..505267,-#_d64db4b72a36cbe060d316f6148a9147 | p@chr17:505227..505267, - |
| 3.84e-45 | FFCP PHASE2:Mm9::chr2:33323607..33323635,+#_d8c580e714cdc6d3b894b2f2808cb725 | p@chr2:33323607..33323635, + |
| 3.84e-45 | FFCP PHASE1:Mm9::chr2:33323607..33323635,+#_d8c580e714cdc6d3b894b2f2808cb725 | p@chr2:33323607..33323635, + |
| 6.09e-45 | FFCP PHASE2:Mm9::chr8:107365938..107365944,+#_88c27d6827dcec7ed328f1ec3d2fca79 | p@chr8:107365938..107365944, + |
| 6.09e-45 | FFCP PHASE1:Mm9::chr8:107365938..107365944,+#_88c27d6827dcec7ed328f1ec3d2fca79 | p@chr8:107365938..107365944, + |
| 7.5e-45 | FFCP PHASE1:Mm9::chr3:104598813..104598825,+#_501b10c405c83992261294c197a64f2b | p@chr3:104598813..104598825, + |
| 7.5e-45 | FFCP PHASE2:Mm9::chr3:104598813..104598825,+#_501b10c405c83992261294c197a64f2b | p@chr3:104598813..104598825, + |
| 8.95e-45 | FFCP PHASE2:Hg19::chr19:3557918..3557927,-#_721f34ab6be1b86a8c97e27071bb302b | p8@MFSD12 |
| 8.95e-45 | FFCP PHASE1:Hg19::chr19:3557918..3557927,-#_721f34ab6be1b86a8c97e27071bb302b | p8@MFSD12 |
| 8.95e-45 | FFCP PHASE2:Hg19::chr1:1497528..1497559,-#_721f34ab6be1b86a8c97e27071bb302b | p2@AK129493 |
| 8.95e-45 | FFCP PHASE1:Hg19::chr1:1497528..1497559,-#_721f34ab6be1b86a8c97e27071bb302b | p2@AK129493 |
| 9.22e-45 | FFCP PHASE2:Mm9::chr8:125098705..125098710,+#_37e2b36a67757434b8da3505f9396483 | p@chr8:125098705..125098710, + |
| 9.22e-45 | FFCP PHASE1:Mm9::chr8:125098705..125098710,+#_37e2b36a67757434b8da3505f9396483 | p@chr8:125098705..125098710, + |
| 9.55e-45 | FFCP PHASE1:Hg19::chr9:12693559..12693562,+#_e3793db39f495f54f0e647731678590e | p22@TYRP1 |
| 9.55e-45 | FFCP PHASE2:Hg19::chr5:159894810..159894819,+#_e3793db39f495f54f0e647731678590e | p12@uc003lyl.3 |
| 9.55e-45 | FFCP PHASE1:Hg19::chr5:159894810..159894819,+#_e3793db39f495f54f0e647731678590e | p12@uc003lyl.3 |
| 9.55e-45 | FFCP PHASE1:Hg19::chr9:12704349..12704362,+#_e3793db39f495f54f0e647731678590e | p@chr9:12704349..12704362, + |
| 9.55e-45 | FFCP PHASE2:Hg19::chr9:12704349..12704362,+#_e3793db39f495f54f0e647731678590e | p@chr9:12704349..12704362, + |
| 9.55e-45 | FFCP PHASE2:Hg19::chr9:12708011..12708027,+#_e3793db39f495f54f0e647731678590e | p27@TYRP1 |
| 9.55e-45 | FFCP PHASE1:Hg19::chr9:12708011..12708027,+#_e3793db39f495f54f0e647731678590e | p27@TYRP1 |
| 9.55e-45 | FFCP PHASE2:Hg19::chr9:12701182..12701196,+#_e3793db39f495f54f0e647731678590e | p19@TYRP1 |
| 9.55e-45 | FFCP PHASE1:Hg19::chr9:12701182..12701196,+#_e3793db39f495f54f0e647731678590e | p19@TYRP1 |
| 9.55e-45 | FFCP PHASE2:Hg19::chr9:12693559..12693562,+#_e3793db39f495f54f0e647731678590e | p22@TYRP1 |
| 1.02e-44 | FFCP PHASE1:Hg19::chr9:12704539..12704547,+#_a92b06229cf426885a5e4d113dd78bc5 | p@chr9:12704539..12704547, + |
| 1.02e-44 | FFCP PHASE2:Hg19::chr9:12704539..12704547,+#_a92b06229cf426885a5e4d113dd78bc5 | p@chr9:12704539..12704547, + |
| 1.02e-44 | FFCP PHASE2:Hg19::chr15:28344426..28344431,-#_a92b06229cf426885a5e4d113dd78bc5 | p2@OCA2 |
| 1.02e-44 | FFCP PHASE1:Hg19::chr15:28344426..28344431,-#_a92b06229cf426885a5e4d113dd78bc5 | p2@OCA2 |
| 1.09e-44 | FFCP PHASE2:Hg19::chr9:12695674..12695681,+#_75eac8e08ac8cf8f93886882222fbc11 | p36@TYRP1 |
| 1.09e-44 | FFCP PHASE1:Hg19::chr9:12695674..12695681,+#_75eac8e08ac8cf8f93886882222fbc11 | p36@TYRP1 |
| 1.16e-44 | FFCP PHASE2:Hg19::chr12:56351078..56351092,-#_dbfb1f8ddee798d618fe652dcfeb4563 | p@chr12:56351078..56351092, - |
| 1.16e-44 | FFCP PHASE1:Hg19::chr12:56351078..56351092,-#_dbfb1f8ddee798d618fe652dcfeb4563 | p@chr12:56351078..56351092, - |
| 1.3e-44 | FFCP PHASE2:Mm9::chr5:135465906..135465912,+#_e11e6fdd81c65aceaabe0ae489acb4ba | p@chr5:135465906..135465912, + |
| 1.3e-44 | FFCP PHASE1:Mm9::chr5:135465906..135465912,+#_e11e6fdd81c65aceaabe0ae489acb4ba | p@chr5:135465906..135465912, + |
| 3.91e-44 | FFCP PHASE2:Mm9::chr9:84127758..84127761,+#_7505d516810ea7a2056f920f22705f8d | p@chr9:84127758..84127761, + |
| 3.91e-44 | FFCP PHASE1:Mm9::chr9:84127758..84127761,+#_7505d516810ea7a2056f920f22705f8d | p@chr9:84127758..84127761, + |
| 4.38e-44 | FFCP PHASE1:Hg19::chr2:128400821..128400830,-#_970822262a9e0fdb2cb7f8613093b7ce | p39@LIMS2 |
| 4.38e-44 | FFCP PHASE1:Hg19::chr17:77923816..77923828,-#_970822262a9e0fdb2cb7f8613093b7ce | p@chr17:77923816..77923828, - |
| 4.38e-44 | FFCP PHASE1:Hg19::chr15:28360793..28360804,-#_970822262a9e0fdb2cb7f8613093b7ce | p@chr15:28360793..28360804, - |
| 4.38e-44 | FFCP PHASE1:Hg19::chr19:3557800..3557811,-#_970822262a9e0fdb2cb7f8613093b7ce | p9@MFSD12 |
| 4.38e-44 | FFCP PHASE1:Hg19::chr1:212594718..212594723,+#_970822262a9e0fdb2cb7f8613093b7ce | p@chr1:212594718..212594723, + |
| 4.38e-44 | FFCP PHASE1:Hg19::chr6:4610888..4610895,+#_970822262a9e0fdb2cb7f8613093b7ce | p2@ENST00000380106 |
| 4.38e-44 | FFCP PHASE1:Hg19::chr1:1497566..1497576,-#_970822262a9e0fdb2cb7f8613093b7ce | p3@AK129493 |
| 4.38e-44 | FFCP PHASE2:Hg19::chr17:77923816..77923828,-#_970822262a9e0fdb2cb7f8613093b7ce | p@chr17:77923816..77923828, - |
| 4.38e-44 | FFCP PHASE1:Hg19::chr9:12709019..12709029,+#_970822262a9e0fdb2cb7f8613093b7ce | p@chr9:12709019..12709029, + |
| 4.38e-44 | FFCP PHASE1:Hg19::chr22:20878094..20878105,+#_970822262a9e0fdb2cb7f8613093b7ce | p41@MED15 |
| 4.38e-44 | FFCP PHASE2:Hg19::chr11:48066945..48066951,+#_970822262a9e0fdb2cb7f8613093b7ce | p@chr11:48066945..48066951, + |
| 4.38e-44 | FFCP PHASE1:Hg19::chr15:28360857..28360860,-#_970822262a9e0fdb2cb7f8613093b7ce | p@chr15:28360857..28360860, - |
| 4.38e-44 | FFCP PHASE2:Hg19::chr1:1497446..1497455,-#_970822262a9e0fdb2cb7f8613093b7ce | p4@AK129493 |
| 4.38e-44 | FFCP PHASE1:Hg19::chr1:1497446..1497455,-#_970822262a9e0fdb2cb7f8613093b7ce | p4@AK129493 |
| 4.38e-44 | FFCP PHASE2:Hg19::chr15:42694665..42694671,+#_970822262a9e0fdb2cb7f8613093b7ce | p16@CAPN3 |
| 4.38e-44 | FFCP PHASE2:Hg19::chr9:12704666..12704671,+#_970822262a9e0fdb2cb7f8613093b7ce | p@chr9:12704666..12704671, + |
| 4.38e-44 | FFCP PHASE2:Hg19::chr9:12701691..12701717,+#_970822262a9e0fdb2cb7f8613093b7ce | p34@TYRP1 |
| 4.38e-44 | FFCP PHASE1:Hg19::chr9:12701691..12701717,+#_970822262a9e0fdb2cb7f8613093b7ce | p34@TYRP1 |
| 4.38e-44 | FFCP PHASE1:Hg19::chr11:48066945..48066951,+#_970822262a9e0fdb2cb7f8613093b7ce | p@chr11:48066945..48066951, + |
| 4.38e-44 | FFCP PHASE2:Hg19::chr11:2920857..2920864,+#_970822262a9e0fdb2cb7f8613093b7ce | p13@SLC22A18 |
| 4.38e-44 | FFCP PHASE1:Hg19::chr9:12704666..12704671,+#_970822262a9e0fdb2cb7f8613093b7ce | p@chr9:12704666..12704671, + |
| 4.38e-44 | FFCP PHASE2:Hg19::chr9:12709200..12709209,+#_970822262a9e0fdb2cb7f8613093b7ce | p@chr9:12709200..12709209, + |
| 4.38e-44 | FFCP PHASE2:Hg19::chr3:69951861..69951868,+#_970822262a9e0fdb2cb7f8613093b7ce | p@chr3:69951861..69951868, + |
| 4.38e-44 | FFCP PHASE1:Hg19::chr15:42694665..42694671,+#_970822262a9e0fdb2cb7f8613093b7ce | p16@CAPN3 |
