UBERON:0004054: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 18: | Line 18: | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of=UBERON:0000079 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 13:35, 27 June 2012
| Name: | internal male genitalia | ||
|---|---|---|---|
| Definition: | "the internal masculine genital organs, including the testes, epididymides, deferent ducts, seminal vesicles, prostate, ejaculatory ducts, and bulbourethral glands" [MP:0009205] | ||
| Xrefs: |
| ||
| Synonyms: |
"internal male genital organ" EXACT [BTO:0003096] "male internal genitalia" EXACT [FMA:45655] "organa genitalia masculina interna" RELATED [BTO:0003096] | ||
| Comments: | Editor note: consider splitting genitalia from genital organ | ||
| Subset: | organ_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0003135(male reproductive organ),UBERON:0004175(internal genitalia) |
|---|---|
| part_of: | UBERON:0000079(male reproductive system) |
Children
| part of: | UBERON:0005352 (spermatic cord),UBERON:0006947 (male genital duct) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10196-103E7 (ductus deferens, adult)
- 10197-103E8 (epididymis, adult)
- 10201-103F3 (seminal vesicle, adult)
- 1310-23B1 (epididymis and seminiferous tubule, neonate N00)
- 1387-42A2 (epididymis and seminiferous tubule, neonate N30)
- 1955-52E4
- 51-27F8 (vesicular gland, adult)
- 58-23B2 (epididymis, adult)
Mouse (Mus musculus)
- 10196-103E7 (ductus deferens, adult)
- 10197-103E8 (epididymis, adult)
- 10201-103F3 (seminal vesicle, adult)
- 1310-23B1 (epididymis and seminiferous tubule, neonate N00)
- 1387-42A2 (epididymis and seminiferous tubule, neonate N30)
- 1955-52E4
- 51-27F8 (vesicular gland, adult)
- 58-23B2 (epididymis, adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004054 (internal male genitalia), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.79e-195 | FFCP PHASE2:Hg19::chr11:125618739..125618756,-#_b5fa5f03202162f851ac5421c58909b4 | p@chr11:125618739..125618756, - |
| 2.79e-195 | FFCP PHASE1:Hg19::chr11:125618661..125618677,+#_b5fa5f03202162f851ac5421c58909b4 | p@chr11:125618661..125618677, + |
| 2.79e-195 | FFCP PHASE1:Hg19::chr11:69950851..69950887,+#_b5fa5f03202162f851ac5421c58909b4 | p@chr11:69950851..69950887, + |
| 2.79e-195 | FFCP PHASE2:Hg19::chr11:125617607..125617617,+#_b5fa5f03202162f851ac5421c58909b4 | p@chr11:125617607..125617617, + |
| 2.79e-195 | FFCP PHASE2:Hg19::chr11:69950851..69950887,+#_b5fa5f03202162f851ac5421c58909b4 | p@chr11:69950851..69950887, + |
| 2.79e-195 | FFCP PHASE1:Hg19::chr14:21214091..21214097,+#_b5fa5f03202162f851ac5421c58909b4 | p3@EDDM3A |
| 2.79e-195 | FFCP PHASE2:Hg19::chr9:138555154..138555159,+#_b5fa5f03202162f851ac5421c58909b4 | p1@LCN9 |
| 2.79e-195 | FFCP PHASE2:Hg19::chr11:125648641..125648646,-#_b5fa5f03202162f851ac5421c58909b4 | p2@PATE2 |
| 2.79e-195 | FFCP PHASE1:Hg19::chr9:138555154..138555159,+#_b5fa5f03202162f851ac5421c58909b4 | p1@LCN9 |
| 2.79e-195 | FFCP PHASE1:Hg19::chr3:140961228..140961237,+#_b5fa5f03202162f851ac5421c58909b4 | p@chr3:140961228..140961237, + |
| 2.79e-195 | FFCP PHASE1:Hg19::chr11:125618739..125618756,-#_b5fa5f03202162f851ac5421c58909b4 | p@chr11:125618739..125618756, - |
| 2.79e-195 | FFCP PHASE2:Hg19::chr11:125617636..125617646,+#_b5fa5f03202162f851ac5421c58909b4 | p@chr11:125617636..125617646, + |
| 2.79e-195 | FFCP PHASE2:Hg19::chr14:21214091..21214097,+#_b5fa5f03202162f851ac5421c58909b4 | p3@EDDM3A |
| 2.79e-195 | FFCP PHASE1:Hg19::chr11:125617607..125617617,+#_b5fa5f03202162f851ac5421c58909b4 | p@chr11:125617607..125617617, + |
| 2.79e-195 | FFCP PHASE2:Hg19::chr11:125648685..125648688,-#_b5fa5f03202162f851ac5421c58909b4 | p3@PATE2 |
| 2.79e-195 | FFCP PHASE2:Hg19::chr11:125616184..125616201,+#_b5fa5f03202162f851ac5421c58909b4 | p2@PATE1 |
| 2.79e-195 | FFCP PHASE1:Hg19::chr11:125648641..125648646,-#_b5fa5f03202162f851ac5421c58909b4 | p2@PATE2 |
| 2.79e-195 | FFCP PHASE1:Hg19::chr11:69951723..69951737,+#_b5fa5f03202162f851ac5421c58909b4 | p@chr11:69951723..69951737, + |
| 2.79e-195 | FFCP PHASE2:Hg19::chr11:125618495..125618517,+#_b5fa5f03202162f851ac5421c58909b4 | p@chr11:125618495..125618517, + |
| 2.79e-195 | FFCP PHASE2:Hg19::chr11:69951723..69951737,+#_b5fa5f03202162f851ac5421c58909b4 | p@chr11:69951723..69951737, + |
| 2.79e-195 | FFCP PHASE1:Hg19::chr11:125617636..125617646,+#_b5fa5f03202162f851ac5421c58909b4 | p@chr11:125617636..125617646, + |
| 2.79e-195 | FFCP PHASE1:Hg19::chrX:112044378..112044412,-#_b5fa5f03202162f851ac5421c58909b4 | p@chrX:112044378..112044412, - |
| 2.79e-195 | FFCP PHASE2:Hg19::chr3:140961228..140961237,+#_b5fa5f03202162f851ac5421c58909b4 | p@chr3:140961228..140961237, + |
| 2.79e-195 | FFCP PHASE2:Hg19::chrX:112044378..112044412,-#_b5fa5f03202162f851ac5421c58909b4 | p@chrX:112044378..112044412, - |
| 2.79e-195 | FFCP PHASE1:Hg19::chr14:105935020..105935028,-#_b5fa5f03202162f851ac5421c58909b4 | p@chr14:105935020..105935028, - |
| 2.79e-195 | FFCP PHASE1:Hg19::chr11:125648685..125648688,-#_b5fa5f03202162f851ac5421c58909b4 | p3@PATE2 |
| 2.79e-195 | FFCP PHASE1:Hg19::chr11:125616184..125616201,+#_b5fa5f03202162f851ac5421c58909b4 | p2@PATE1 |
| 2.79e-195 | FFCP PHASE1:Hg19::chr14:21213984..21213993,+#_b5fa5f03202162f851ac5421c58909b4 | p2@EDDM3A |
| 2.79e-195 | FFCP PHASE2:Hg19::chr11:125618661..125618677,+#_b5fa5f03202162f851ac5421c58909b4 | p@chr11:125618661..125618677, + |
| 2.79e-195 | FFCP PHASE1:Hg19::chr11:125618495..125618517,+#_b5fa5f03202162f851ac5421c58909b4 | p@chr11:125618495..125618517, + |
| 2.79e-195 | FFCP PHASE2:Hg19::chr14:105935020..105935028,-#_b5fa5f03202162f851ac5421c58909b4 | p@chr14:105935020..105935028, - |
| 2.79e-195 | FFCP PHASE1:Hg19::chr15:25165150..25165161,+#_b5fa5f03202162f851ac5421c58909b4 | p@chr15:25165150..25165161, + |
| 2.79e-195 | FFCP PHASE2:Hg19::chr15:25165150..25165161,+#_b5fa5f03202162f851ac5421c58909b4 | p@chr15:25165150..25165161, + |
| 2.79e-195 | FFCP PHASE2:Hg19::chr14:21213984..21213993,+#_b5fa5f03202162f851ac5421c58909b4 | p2@EDDM3A |
| 3.27e-147 | FFCP PHASE2:Hg19::chr10:114094924..114094935,-#_bc1075cd73c6feb0190e54d648d990d4 | p@chr10:114094924..114094935, - |
| 3.27e-147 | FFCP PHASE2:Hg19::chr14:21214039..21214057,+#_bc1075cd73c6feb0190e54d648d990d4 | p1@EDDM3A |
| 3.27e-147 | FFCP PHASE1:Hg19::chr11:69951071..69951079,+#_bc1075cd73c6feb0190e54d648d990d4 | p@chr11:69951071..69951079, + |
| 3.27e-147 | FFCP PHASE2:Hg19::chr11:69951071..69951079,+#_bc1075cd73c6feb0190e54d648d990d4 | p@chr11:69951071..69951079, + |
| 3.27e-147 | FFCP PHASE2:Hg19::chr10:119307515..119307518,+#_bc1075cd73c6feb0190e54d648d990d4 | p23@EMX2 |
| 3.27e-147 | FFCP PHASE1:Hg19::chr10:114094924..114094935,-#_bc1075cd73c6feb0190e54d648d990d4 | p@chr10:114094924..114094935, - |
| 3.27e-147 | FFCP PHASE1:Hg19::chr16:2126158..2126172,+#_bc1075cd73c6feb0190e54d648d990d4 | p9@TSC2 |
| 3.27e-147 | FFCP PHASE1:Hg19::chr11:92922903..92922918,+#_bc1075cd73c6feb0190e54d648d990d4 | p@chr11:92922903..92922918, + |
| 3.27e-147 | FFCP PHASE2:Hg19::chr11:92922903..92922918,+#_bc1075cd73c6feb0190e54d648d990d4 | p@chr11:92922903..92922918, + |
| 3.27e-147 | FFCP PHASE1:Hg19::chr10:119307515..119307518,+#_bc1075cd73c6feb0190e54d648d990d4 | p23@EMX2 |
| 3.27e-147 | FFCP PHASE1:Hg19::chr7:25702669..25702678,-#_bc1075cd73c6feb0190e54d648d990d4 | p4@ENST00000446840, p4@uc003sxp.1 |
| 3.27e-147 | FFCP PHASE2:Hg19::chr7:25702669..25702678,-#_bc1075cd73c6feb0190e54d648d990d4 | p4@ENST00000446840, p4@uc003sxp.1 |
| 3.27e-147 | FFCP PHASE2:Hg19::chr16:2126158..2126172,+#_bc1075cd73c6feb0190e54d648d990d4 | p9@TSC2 |
| 3.27e-147 | FFCP PHASE1:Hg19::chr14:21214039..21214057,+#_bc1075cd73c6feb0190e54d648d990d4 | p1@EDDM3A |
| 5.41e-147 | FFCP PHASE1:Hg19::chr15:64423864..64423884,+#_c3b3cc609e557f66c6d004e29d532832 | p8@SNX1 |
| 5.41e-147 | FFCP PHASE1:Hg19::chr17:59475447..59475455,+#_c3b3cc609e557f66c6d004e29d532832 | p@chr17:59475447..59475455, + |
| 5.41e-147 | FFCP PHASE2:Hg19::chr15:64423864..64423884,+#_c3b3cc609e557f66c6d004e29d532832 | p8@SNX1 |
| 5.41e-147 | FFCP PHASE2:Hg19::chr17:59475447..59475455,+#_c3b3cc609e557f66c6d004e29d532832 | p@chr17:59475447..59475455, + |
| 5.41e-147 | FFCP PHASE2:Hg19::chr11:125706033..125706038,+#_c3b3cc609e557f66c6d004e29d532832 | p@chr11:125706033..125706038, + |
| 5.41e-147 | FFCP PHASE1:Hg19::chr11:125706033..125706038,+#_c3b3cc609e557f66c6d004e29d532832 | p@chr11:125706033..125706038, + |
| 5.41e-147 | FFCP PHASE1:Hg19::chr11:69950033..69950046,+#_c3b3cc609e557f66c6d004e29d532832 | p11@ANO1 |
| 5.41e-147 | FFCP PHASE2:Hg19::chr11:69950033..69950046,+#_c3b3cc609e557f66c6d004e29d532832 | p11@ANO1 |
| 8.93e-147 | FFCP PHASE1:Hg19::chr2:87985242..87985251,-#_7c738a1dfb98e7b108cfbee585465c7e | p@chr2:87985242..87985251, - |
| 8.93e-147 | FFCP PHASE2:Hg19::chr10:102505147..102505162,+#_7c738a1dfb98e7b108cfbee585465c7e | p9@PAX2 |
| 8.93e-147 | FFCP PHASE2:Hg19::chr2:87985242..87985251,-#_7c738a1dfb98e7b108cfbee585465c7e | p@chr2:87985242..87985251, - |
| 8.93e-147 | FFCP PHASE1:Hg19::chr10:102505147..102505162,+#_7c738a1dfb98e7b108cfbee585465c7e | p9@PAX2 |
| 1.47e-146 | FFCP PHASE2:Hg19::chr3:107201385..107201388,-#_efae16a6c734c0a498a651f50a0cac8d | p@chr3:107201385..107201388, - |
| 1.47e-146 | FFCP PHASE1:Hg19::chr3:107201385..107201388,-#_efae16a6c734c0a498a651f50a0cac8d | p@chr3:107201385..107201388, - |
| 8.98e-131 | FFCP PHASE2:Hg19::chr20:43850418..43850438,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr20:43850418..43850438, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr11:34816713..34816719,-#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr11:34816713..34816719, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr19:15729741..15729749,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr19:15729741..15729749, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr5:175288705..175288713,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p28@CPLX2 |
| 8.98e-131 | FFCP PHASE2:Hg19::chr20:13186643..13186668,-#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr20:13186643..13186668, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr20:43850436..43850444,-#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr20:43850436..43850444, - |
| 8.98e-131 | FFCP PHASE2:Hg19::chr20:43851992..43851993,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr20:43851992..43851993, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr20:43836544..43836571,-#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr20:43836544..43836571, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr20:43851492..43851518,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr20:43851492..43851518, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr17:2279627..2279651,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p2@SGSM2 |
| 8.98e-131 | FFCP PHASE2:Hg19::chr2:223648293..223648295,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr2:223648293..223648295, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr20:43838283..43838286,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr20:43838283..43838286, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr19:15739153..15739175,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr19:15739153..15739175, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr12:126515178..126515204,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr12:126515178..126515204, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr10:102505901..102505907,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p13@PAX2 |
| 8.98e-131 | FFCP PHASE2:Hg19::chr20:43851679..43851707,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr20:43851679..43851707, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr20:43836329..43836334,-#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr20:43836329..43836334, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr20:44330731..44330738,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p3@WFDC13 |
| 8.98e-131 | FFCP PHASE1:Hg19::chr4:56138971..56138991,-#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr4:56138971..56138991, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr20:43851172..43851181,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr20:43851172..43851181, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr20:43836115..43836122,-#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr20:43836115..43836122, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr13:90858329..90858339,-#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr13:90858329..90858339, - |
| 8.98e-131 | FFCP PHASE2:Hg19::chr10:119590749..119590754,-#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr10:119590749..119590754, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr10:99599763..99599792,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr10:99599763..99599792, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr20:43852004..43852005,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr20:43852004..43852005, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr11:1024905..1024910,-#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr11:1024905..1024910, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr20:43837135..43837167,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr20:43837135..43837167, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr19:15731181..15731184,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr19:15731181..15731184, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr9:132204351..132204358,-#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr9:132204351..132204358, - |
| 8.98e-131 | FFCP PHASE2:Hg19::chr11:1032745..1032750,-#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr11:1032745..1032750, - |
| 8.98e-131 | FFCP PHASE2:Hg19::chr10:102502483..102502493,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr10:102502483..102502493, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr20:43851326..43851348,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr20:43851326..43851348, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr20:43836162..43836169,-#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr20:43836162..43836169, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr19:15736305..15736328,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr19:15736305..15736328, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr20:43850844..43850864,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr20:43850844..43850864, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr9:132204351..132204358,-#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr9:132204351..132204358, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr20:43836170..43836181,-#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr20:43836170..43836181, - |
| 8.98e-131 | FFCP PHASE2:Hg19::chr20:43837102..43837114,+#_ec6eaba8190ff5751b61d4c6dccfcd40 | p@chr20:43837102..43837114, + |
