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|subset=uberon_slim
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0008835
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=
|part_of=UBERON:0001173;;UBERON:0002294
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 13:32, 27 June 2012

Name:bile duct
Definition:"Duct that carries bile from the liver to the small intestine." [Wikipedia:Bile_duct, ZFA:0001100]
Xrefs:
links:

AAO:0011019
BTO:0000122
EHDAA2:0000741
EV:0100091
FMA:9706
GAID:280
[ Digestive_system_showing_bile_duct.png Digestive_system_showing_bile_duct.png]
[ 200px-Digestive_system_showing_bile_duct.png 200px-Digestive_system_showing_bile_duct.png]
MA:0000354
MESH:A.03.159.183
ncithesaurus:Bile_Duct
OpenCyc:Mx4rvdCds5wpEbGdrcN5Y29ycA
SCTID:276157007
VHOG:0000212

XAO:0000134
Synonyms: "gall duct" RELATED [BTO:0000122]
"hepatic duct" RELATED []
Comments:The path is as follows: Bile canaliculi 遶� Canals of Hering 遶� interlobular bile ducts 遶� intrahepatic bile ducts 遶� left and right hepatic ducts merge to form 遶� common hepatic duct exits liver and joins 遶� cystic duct (from gall bladder) forming 遶� common bile duct 遶� joins with pancreatic duct 遶� forming ampulla of Vater 遶� enters duodenum [WP]
Alt_id: UBERON:FMA_9706-MA_0000354-XAO_0000134
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003928(digestive system duct),UBERON:0004119(endoderm-derived structure)
develops_from:UBERON:0008835(hepatic diverticulum)
part_of:UBERON:0001173(biliary tree),UBERON:0002294(biliary system)



Children

is a:UBERON:0003703 (extrahepatic bile duct),UBERON:0003704 (intrahepatic bile duct),UBERON:0005171 (hepatic duct)
derives from:FF:0103910 (bile duct cancer cell line sample)
part of:UBERON:0004820 (bile duct epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002394 (bile duct), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.07e-86FFCP PHASE2:Mm9::chr15:82193340..82193343,+#_fda5f37fd992588e06a692670ec5eedfp@chr15:82193340..82193343, +
3.07e-86FFCP PHASE2:Mm9::chr9:42915220..42915225,-#_fda5f37fd992588e06a692670ec5eedfp@chr9:42915220..42915225, -
3.07e-86FFCP PHASE2:Mm9::chr13:100000226..100000230,+#_fda5f37fd992588e06a692670ec5eedfp@chr13:100000226..100000230, +
3.07e-86FFCP PHASE1:Mm9::chr17:12388232..12388237,+#_fda5f37fd992588e06a692670ec5eedfp@chr17:12388232..12388237, +
3.07e-86FFCP PHASE2:Mm9::chr1:138241693..138241697,+#_fda5f37fd992588e06a692670ec5eedfp@chr1:138241693..138241697, +
3.07e-86FFCP PHASE1:Mm9::chr8:127816016..127816021,+#_fda5f37fd992588e06a692670ec5eedfp@chr8:127816016..127816021, +
3.07e-86FFCP PHASE1:Mm9::chr10:85585949..85585969,-#_fda5f37fd992588e06a692670ec5eedfp@chr10:85585949..85585969, -
3.07e-86FFCP PHASE2:Mm9::chr4:62009160..62009164,-#_fda5f37fd992588e06a692670ec5eedfp@chr4:62009160..62009164, -
3.07e-86FFCP PHASE2:Mm9::chr10:85587155..85587188,+#_fda5f37fd992588e06a692670ec5eedfp@chr10:85587155..85587188, +
3.07e-86FFCP PHASE2:Mm9::chr8:25530071..25530072,+#_fda5f37fd992588e06a692670ec5eedfp@chr8:25530071..25530072, +
3.07e-86FFCP PHASE2:Mm9::chr2:84756280..84756286,+#_fda5f37fd992588e06a692670ec5eedfp@chr2:84756280..84756286, +
3.07e-86FFCP PHASE1:Mm9::chr3:121593688..121593695,+#_fda5f37fd992588e06a692670ec5eedfp@chr3:121593688..121593695, +
3.07e-86FFCP PHASE2:Mm9::chr17:12388232..12388237,+#_fda5f37fd992588e06a692670ec5eedfp@chr17:12388232..12388237, +
3.07e-86FFCP PHASE2:Mm9::chr2:169549462..169549477,+#_fda5f37fd992588e06a692670ec5eedfp@chr2:169549462..169549477, +
3.07e-86FFCP PHASE1:Mm9::chr12:100752983..100752984,+#_fda5f37fd992588e06a692670ec5eedfp@chr12:100752983..100752984, +
3.07e-86FFCP PHASE2:Mm9::chr12:88237840..88237851,-#_fda5f37fd992588e06a692670ec5eedfp@chr12:88237840..88237851, -
3.07e-86FFCP PHASE1:Mm9::chr2:11935531..11935538,-#_fda5f37fd992588e06a692670ec5eedfp@chr2:11935531..11935538, -
3.07e-86FFCP PHASE1:Mm9::chr13:113543694..113543702,-#_fda5f37fd992588e06a692670ec5eedfp@chr13:113543694..113543702, -
3.07e-86FFCP PHASE1:Mm9::chr12:86691530..86691535,-#_fda5f37fd992588e06a692670ec5eedfp@chr12:86691530..86691535, -
3.07e-86FFCP PHASE2:Mm9::chr2:129407463..129407468,-#_fda5f37fd992588e06a692670ec5eedfp@chr2:129407463..129407468, -
3.07e-86FFCP PHASE1:Mm9::chr15:90508949..90508955,-#_fda5f37fd992588e06a692670ec5eedfp@chr15:90508949..90508955, -
3.07e-86FFCP PHASE2:Mm9::chr15:88669906..88669914,+#_fda5f37fd992588e06a692670ec5eedfp@chr15:88669906..88669914, +
3.07e-86FFCP PHASE2:Mm9::chr15:59435855..59435878,-#_fda5f37fd992588e06a692670ec5eedfp@chr15:59435855..59435878, -
3.07e-86FFCP PHASE1:Mm9::chr5:114422970..114422985,-#_fda5f37fd992588e06a692670ec5eedfp@chr5:114422970..114422985, -
3.07e-86FFCP PHASE2:Mm9::chr11:109223779..109223789,-#_fda5f37fd992588e06a692670ec5eedfp@chr11:109223779..109223789, -
3.07e-86FFCP PHASE1:Mm9::chr5:124112234..124112240,+#_fda5f37fd992588e06a692670ec5eedfp@chr5:124112234..124112240, +
3.07e-86FFCP PHASE1:Mm9::chr11:107196799..107196814,+#_fda5f37fd992588e06a692670ec5eedfp@chr11:107196799..107196814, +
3.07e-86FFCP PHASE2:Mm9::chr6:34549876..34549892,-#_fda5f37fd992588e06a692670ec5eedfp@chr6:34549876..34549892, -
3.07e-86FFCP PHASE1:Mm9::chr7:87919399..87919406,+#_fda5f37fd992588e06a692670ec5eedfp@chr7:87919399..87919406, +
3.07e-86FFCP PHASE1:Mm9::chr10:60279719..60279737,-#_fda5f37fd992588e06a692670ec5eedfp@chr10:60279719..60279737, -
3.07e-86FFCP PHASE1:Mm9::chr15:82207617..82207621,+#_fda5f37fd992588e06a692670ec5eedfp@chr15:82207617..82207621, +
3.07e-86FFCP PHASE2:Mm9::chr11:68437375..68437378,+#_fda5f37fd992588e06a692670ec5eedfp@chr11:68437375..68437378, +
3.07e-86FFCP PHASE1:Mm9::chr18:39513150..39513152,+#_fda5f37fd992588e06a692670ec5eedfp@chr18:39513150..39513152, +
3.07e-86FFCP PHASE1:Mm9::chr17:35093616..35093631,-#_fda5f37fd992588e06a692670ec5eedfp@chr17:35093616..35093631, -
3.07e-86FFCP PHASE1:Mm9::chr16:28911901..28911906,-#_fda5f37fd992588e06a692670ec5eedfp@chr16:28911901..28911906, -
3.07e-86FFCP PHASE1:Mm9::chr4:137487112..137487117,+#_fda5f37fd992588e06a692670ec5eedfp@chr4:137487112..137487117, +
3.07e-86FFCP PHASE2:Mm9::chr12:86691575..86691580,-#_fda5f37fd992588e06a692670ec5eedfp@chr12:86691575..86691580, -
3.07e-86FFCP PHASE2:Mm9::chr11:88890706..88890745,+#_fda5f37fd992588e06a692670ec5eedfp@chr11:88890706..88890745, +
3.07e-86FFCP PHASE2:Mm9::chr18:39513150..39513152,+#_fda5f37fd992588e06a692670ec5eedfp@chr18:39513150..39513152, +
3.07e-86FFCP PHASE1:Mm9::chr3:90270007..90270012,+#_fda5f37fd992588e06a692670ec5eedfp@chr3:90270007..90270012, +
3.07e-86FFCP PHASE1:Mm9::chr13:96429602..96429605,-#_fda5f37fd992588e06a692670ec5eedfp@chr13:96429602..96429605, -
3.07e-86FFCP PHASE2:Mm9::chr17:48822294..48822295,-#_fda5f37fd992588e06a692670ec5eedfp@chr17:48822294..48822295, -
3.07e-86FFCP PHASE2:Mm9::chr17:28107053..28107062,-#_fda5f37fd992588e06a692670ec5eedfp@chr17:28107053..28107062, -
3.07e-86FFCP PHASE1:Mm9::chr11:54785454..54785456,-#_fda5f37fd992588e06a692670ec5eedfp@chr11:54785454..54785456, -
3.07e-86FFCP PHASE2:Mm9::chr1:186559285..186559288,+#_fda5f37fd992588e06a692670ec5eedfp@chr1:186559285..186559288, +
3.07e-86FFCP PHASE2:Mm9::chr10:85585949..85585969,-#_fda5f37fd992588e06a692670ec5eedfp@chr10:85585949..85585969, -
3.07e-86FFCP PHASE2:Mm9::chr16:85801525..85801529,-#_fda5f37fd992588e06a692670ec5eedfp6@Adamts1
3.07e-86FFCP PHASE1:Mm9::chr3:104857794..104857802,-#_fda5f37fd992588e06a692670ec5eedfp@chr3:104857794..104857802, -
3.07e-86FFCP PHASE1:Mm9::chr10:21389022..21389032,+#_fda5f37fd992588e06a692670ec5eedfp@chr10:21389022..21389032, +
3.07e-86FFCP PHASE2:Mm9::chr4:43407825..43407830,+#_fda5f37fd992588e06a692670ec5eedfp@chr4:43407825..43407830, +
3.07e-86FFCP PHASE1:Mm9::chr16:85547242..85547252,+#_fda5f37fd992588e06a692670ec5eedfp@chr16:85547242..85547252, +
3.07e-86FFCP PHASE1:Mm9::chr15:59435855..59435878,-#_fda5f37fd992588e06a692670ec5eedfp@chr15:59435855..59435878, -
3.07e-86FFCP PHASE2:Mm9::chr8:3311867..3311873,+#_fda5f37fd992588e06a692670ec5eedfp@chr8:3311867..3311873, +
3.07e-86FFCP PHASE2:Mm9::chr1:66883923..66883955,-#_fda5f37fd992588e06a692670ec5eedfp@chr1:66883923..66883955, -
3.07e-86FFCP PHASE2:Mm9::chr6:48398664..48398684,-#_fda5f37fd992588e06a692670ec5eedfp@chr6:48398664..48398684, -
3.07e-86FFCP PHASE2:Mm9::chr18:47491114..47491123,+#_fda5f37fd992588e06a692670ec5eedfp@chr18:47491114..47491123, +
3.07e-86FFCP PHASE1:Mm9::chr11:48685851..48685860,-#_fda5f37fd992588e06a692670ec5eedfp@chr11:48685851..48685860, -
3.07e-86FFCP PHASE2:Mm9::chr18:4336287..4336296,-#_fda5f37fd992588e06a692670ec5eedfp8@Map3k8
3.07e-86FFCP PHASE1:Mm9::chr18:47491114..47491123,+#_fda5f37fd992588e06a692670ec5eedfp@chr18:47491114..47491123, +
3.07e-86FFCP PHASE1:Mm9::chr10:93499468..93499494,-#_fda5f37fd992588e06a692670ec5eedfp@chr10:93499468..93499494, -
3.07e-86FFCP PHASE2:Mm9::chr18:35881716..35881727,-#_fda5f37fd992588e06a692670ec5eedfp@chr18:35881716..35881727, -
3.07e-86FFCP PHASE1:Mm9::chr4:126939557..126939562,+#_fda5f37fd992588e06a692670ec5eedfp@chr4:126939557..126939562, +
3.07e-86FFCP PHASE2:Mm9::chr15:82207617..82207621,+#_fda5f37fd992588e06a692670ec5eedfp@chr15:82207617..82207621, +
3.07e-86FFCP PHASE2:Mm9::chr17:35096519..35096524,+#_fda5f37fd992588e06a692670ec5eedfp@chr17:35096519..35096524, +
3.07e-86FFCP PHASE2:Mm9::chr8:86713876..86713879,+#_fda5f37fd992588e06a692670ec5eedfp@chr8:86713876..86713879, +
3.07e-86FFCP PHASE1:Mm9::chr12:88237840..88237851,-#_fda5f37fd992588e06a692670ec5eedfp@chr12:88237840..88237851, -
3.07e-86FFCP PHASE1:Mm9::chr10:85585991..85586025,-#_fda5f37fd992588e06a692670ec5eedfp@chr10:85585991..85586025, -
3.07e-86FFCP PHASE2:Mm9::chr9:45920408..45920437,-#_fda5f37fd992588e06a692670ec5eedfp@chr9:45920408..45920437, -
3.07e-86FFCP PHASE1:Mm9::chr18:60398371..60398393,-#_fda5f37fd992588e06a692670ec5eedfp@chr18:60398371..60398393, -
3.07e-86FFCP PHASE1:Mm9::chr17:34796428..34796430,-#_fda5f37fd992588e06a692670ec5eedfp@chr17:34796428..34796430, -
3.07e-86FFCP PHASE1:Mm9::chr17:48822294..48822295,-#_fda5f37fd992588e06a692670ec5eedfp@chr17:48822294..48822295, -
3.07e-86FFCP PHASE2:Mm9::chr8:111108947..111108951,+#_fda5f37fd992588e06a692670ec5eedfp@chr8:111108947..111108951, +
3.07e-86FFCP PHASE1:Mm9::chr4:62009160..62009164,-#_fda5f37fd992588e06a692670ec5eedfp@chr4:62009160..62009164, -
3.07e-86FFCP PHASE1:Mm9::chr6:51831254..51831256,-#_fda5f37fd992588e06a692670ec5eedfp@chr6:51831254..51831256, -
3.07e-86FFCP PHASE1:Mm9::chr13:113550715..113550722,-#_fda5f37fd992588e06a692670ec5eedfp@chr13:113550715..113550722, -
3.07e-86FFCP PHASE1:Mm9::chr8:87745380..87745385,+#_fda5f37fd992588e06a692670ec5eedfp@chr8:87745380..87745385, +
3.07e-86FFCP PHASE2:Mm9::chr6:91441074..91441080,-#_fda5f37fd992588e06a692670ec5eedfp@chr6:91441074..91441080, -
3.07e-86FFCP PHASE2:Mm9::chr8:11183699..11183703,-#_fda5f37fd992588e06a692670ec5eedfp@chr8:11183699..11183703, -
3.07e-86FFCP PHASE1:Mm9::chr11:115280630..115280662,+#_fda5f37fd992588e06a692670ec5eedfp@chr11:115280630..115280662, +
3.07e-86FFCP PHASE2:Mm9::chr17:34796428..34796430,-#_fda5f37fd992588e06a692670ec5eedfp@chr17:34796428..34796430, -
3.07e-86FFCP PHASE2:Mm9::chrX:166418658..166418683,+#_fda5f37fd992588e06a692670ec5eedfp@chrX:166418658..166418683, +
3.07e-86FFCP PHASE1:Mm9::chr12:86691575..86691580,-#_fda5f37fd992588e06a692670ec5eedfp@chr12:86691575..86691580, -
3.07e-86FFCP PHASE2:Mm9::chr15:32178407..32178408,-#_fda5f37fd992588e06a692670ec5eedfp@chr15:32178407..32178408, -
3.07e-86FFCP PHASE2:Mm9::chr5:64344878..64344887,-#_fda5f37fd992588e06a692670ec5eedfp@chr5:64344878..64344887, -
3.07e-86FFCP PHASE1:Mm9::chr17:28107053..28107062,-#_fda5f37fd992588e06a692670ec5eedfp@chr17:28107053..28107062, -
3.07e-86FFCP PHASE2:Mm9::chr11:107196799..107196814,+#_fda5f37fd992588e06a692670ec5eedfp@chr11:107196799..107196814, +
3.07e-86FFCP PHASE1:Mm9::chr8:3311867..3311873,+#_fda5f37fd992588e06a692670ec5eedfp@chr8:3311867..3311873, +
3.07e-86FFCP PHASE1:Mm9::chr13:113053257..113053258,+#_fda5f37fd992588e06a692670ec5eedfp@chr13:113053257..113053258, +
3.07e-86FFCP PHASE1:Mm9::chr10:94580525..94580530,+#_fda5f37fd992588e06a692670ec5eedfp@chr10:94580525..94580530, +
3.07e-86FFCP PHASE2:Mm9::chr12:100752983..100752984,+#_fda5f37fd992588e06a692670ec5eedfp@chr12:100752983..100752984, +
3.07e-86FFCP PHASE2:Mm9::chr2:133323630..133323631,+#_fda5f37fd992588e06a692670ec5eedfp@chr2:133323630..133323631, +
3.07e-86FFCP PHASE1:Mm9::chr8:86713876..86713879,+#_fda5f37fd992588e06a692670ec5eedfp@chr8:86713876..86713879, +
3.07e-86FFCP PHASE1:Mm9::chr12:8400090..8400093,+#_fda5f37fd992588e06a692670ec5eedfp@chr12:8400090..8400093, +
3.07e-86FFCP PHASE1:Mm9::chrX:166418658..166418683,+#_fda5f37fd992588e06a692670ec5eedfp@chrX:166418658..166418683, +
3.07e-86FFCP PHASE1:Mm9::chr15:82209805..82209851,+#_fda5f37fd992588e06a692670ec5eedfp@chr15:82209805..82209851, +
3.07e-86FFCP PHASE1:Mm9::chr11:88890706..88890745,+#_fda5f37fd992588e06a692670ec5eedfp@chr11:88890706..88890745, +
3.07e-86FFCP PHASE2:Mm9::chr3:104857794..104857802,-#_fda5f37fd992588e06a692670ec5eedfp@chr3:104857794..104857802, -
3.07e-86FFCP PHASE1:Mm9::chr3:9705000..9705004,-#_fda5f37fd992588e06a692670ec5eedfp4@Pag1
3.07e-86FFCP PHASE1:Mm9::chr18:4336287..4336296,-#_fda5f37fd992588e06a692670ec5eedfp8@Map3k8
3.07e-86FFCP PHASE1:Mm9::chr13:100000226..100000230,+#_fda5f37fd992588e06a692670ec5eedfp@chr13:100000226..100000230, +

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